Expression Summary

Expressions

Publication	Data		Expressed Genes	Anatomy
England et al., 2020	Figure 1		hmx1	(not) spinal cord
			hmx2	(not) spinal cord
			hmx3a	(not) spinal cord
			hmx3b	(not) spinal cord
			hmx4	inner ear postero-ventral region
Xie et al., 2020	Fig 6		e2f5	pronephric duct
Gou et al., 2018	Fig. 9		atoh1a	otic vesicle
			neurog1	otic vesicle
Kawahara et al., 2018	Fig. S3		ly97.3	floor plate neural tube
Kuwabara et al., 2018	Fig. 1		hk1	brain
			hk2	spinal cord
			ldha	spinal cord
			pkma	spinal cord
			slc2a1a	pronephric duct
			slc2a3a	spinal cord
	Fig. 2		elavl3	whole organism
			hk1	whole organism
			hk2	whole organism
			ldha	whole organism
			pkma	whole organism
			slc2a1a	whole organism
			slc2a3a	whole organism
	Fig. 3		elavl3	brain
			hk1	brain
			hk2	retina
			ldha	brain
			pkma	brain
			slc2a1a	retina
			slc2a3a	brain
	Fig. 4		elavl3	whole organism
			hk1	whole organism
			hk2	whole organism
			ldha	whole organism
			pkma	whole organism
			slc2a1a	whole organism
			slc2a3a	whole organism
Anuppalle et al., 2017	Fig. 5		prune2	telencephalon
Gore et al., 2016	Fig. 1		dnmt3bb.1	ventral wall of dorsal aorta whole organism
Mahony et al., 2016	Fig. 1		runx1	(not) ventral wall of dorsal aorta
			tfec	(not) neural crest
Shin et al., 2016	Fig. 7		flt4	intersegmental vessel posterior cardinal vein
			kdrl	posterior cardinal vein intersegmental vessel
Thambyrajah et al., 2016	Fig. 4		gfi1aa	(not) hematopoietic multipotent progenitor cell
Cheng et al., 2015	Fig. 2		her2	central nervous system neuroectoderm segmental plate
Cheng et al., 2015	Fig. 2		dtx1	whole organism nervous system
Ghaye et al., 2015	Fig. 5		ascl1b	nervous system
			nkx6.1	(not) pancreas primordium pancreas primordium
Lin et al., 2015	Fig. 2		myb	(not) ventral wall of dorsal aorta hematopoietic multipotent progenitor cell
	Fig. 4		myb	(not) ventral wall of dorsal aorta hematopoietic multipotent progenitor cell
Rider et al., 2015	Fig. 5		ren	(not) anterior mesenteric artery (not) embryonic structure
Stooke-Vaughan et al., 2015	Fig. 5		otog	macula utricle
			tecta	macula utricle
Zhou et al., 2015	Fig. 2		mcidas	pronephric tubule multi-ciliated epithelial cell
Bresciani et al., 2014	Fig. 7		cbfb	(not) ventral wall of dorsal aorta
England et al., 2014	Fig. 16		mbnl2	diencephalon
	Fig. 2		drl	blood
	Fig. 27		sp8a	ventral fin fold
	Fig. 32		zbtb8a	epidermal cell
	Fig. 8		hells	midbrain
Jacob et al., 2014	Fig. 4		ascl1b	hindbrain
Okigawa et al., 2014	Fig. 1		irx3a	spinal cord interneuron
			nkx6.1	spinal cord interneuron
			tal1	VeLD
			vsx2	CiD
So et al., 2014	Fig. S6		vegfaa	somite
Cheng et al., 2013	Fig. 5		neurog1	neuroblast
Flasse et al., 2013	Fig. 4		agr2	gut goblet cell
			fabp2	(not) enterocyte
	Fig. 5		ascl1a	gut
Flasse et al., 2013	Fig. 4		ascl1b	pancreas primordium
			neurod1	pancreas primordium
Pascoal et al., 2013	Fig. 3		myod1	pectoral fin musculature
			sox9a	pectoral fin cartilage
			sox9b	pectoral fin cartilage
	Fig. 5		desma	(not) pectoral fin musculature contractile muscle fiber
			vcla	(not) pectoral fin musculature muscle tendon junction
	Fig. 6		desma	mesenchyme pectoral fin pectoral fin
			vcla	pectoral fin
			vclb	mesenchyme pectoral fin pectoral fin
Cutty et al., 2012	Fig. 4		mespab	segmental plate anterior compartment
			mespbb	segmental plate anterior compartment
Porazzi et al., 2012	Fig. 1		nkx2.4b	pharyngeal endoderm
			pax2a	pharyngeal endoderm
			tg	thyroid follicle thyroid primordium
	Fig. 2		nkx2.4b	pharyngeal endoderm
			pax2a	pharyngeal endoderm
			tg	thyroid follicle thyroid primordium
	Fig. 3		kdrl	pharyngeal vasculature blood vessel endothelium
			tg	thyroid follicle thyroid primordium
	Fig. 4		foxa2	pharyngeal endoderm
	Fig. S1		nkx2.4b	thyroid follicle
			slc5a5	thyroid follicle
Dam et al., 2011	Fig. 4		scrt1a	central nervous system
			scrt1b	central nervous system
			scrt2	central nervous system
Kapsimali et al., 2011	Fig. 6		ascl1a	lip epithelium taste bud
			calb2b	pharyngeal arch taste bud
			dlb	pharyngeal arch 3 epithelium
			etv4	pharyngeal arch epithelium
			mir200a	pharyngeal arch taste bud
Mizoguchi et al., 2011	Fig. 1		neurod1	posterior lateral line placode
	Fig. 6		atoh1a	posterior lateral line primordium
Chung et al., 2010	Fig. 4		atp6v0cb	central nervous system
Herrgen et al., 2010	Fig. 3		isl1a	interneuron
			mespba	somite
	Fig. 4		dlc	somite
			isl1a	Rohon-Beard neuron
	Fig. 6		mespab	(not) segmental plate
Mahler et al., 2010	Fig. 7		olig2	(not) caudal tuberculum forebrain
	Fig. 8		dlx5a	midbrain
			otpa	midbrain
			sim1a	forebrain
	Fig. 9		crhb	thalamus
Hwang et al., 2009	Fig. 1		atp6v1f	whole organism
			elavl4	whole organism
			mxd3	(not) whole organism
			serinc1	whole organism
			slc1a3a	(not) whole organism
			slc39a7	(not) whole organism
	Fig. 2		atp6v0cb	neural tube
			gdf3	tail bud
			gemin4	midbrain hindbrain boundary neural rod
			grin1a	head
			txlnbb	somite
Matsuda et al., 2009	Fig. 2		dld	hindbrain hindbrain neural plate
Nikolaou et al., 2009	Fig. 5		dla	hindbrain
			notch1a	hindbrain
Qiu et al., 2009	Fig. 1		cdh2	hindbrain
			foxb1a	hindbrain
			rfng	rhombomere
	Fig. 2		foxb1a	hindbrain
			her6	hindbrain
			her9	hindbrain
	Fig. 3		dla	hindbrain CNS neuron (sensu Vertebrata)
			elavl3	hindbrain CNS neuron (sensu Vertebrata)
			foxb1a	hindbrain
			neurog1	hindbrain CNS neuron (sensu Vertebrata)
			rfng	rhombomere
So et al., 2009	Fig. 2		her4.1	trigeminal ganglion
Batista et al., 2008	Fig. 8		gad1b	spinal cord interneuron
			gad2	spinal cord interneuron
			gata2a	spinal cord interneuron
			gata3	(not) VeLD
			lhx3	CiD
			tal1	(not) spinal cord interneuron spinal cord interneuron
			vsx1	CiD
			vsx2	CiD
Cau et al., 2008	Fig. 3		ascl1a	neuron
			neurog1	neuron
			noto	epiphysis
Dutta et al., 2008	Fig. 3		lhx3	adenohypophyseal placode
			prl	adenohypophyseal placode
	Fig. 4		cga	adenohypophysis
			gh1	(not) hypophysis
			pomca	neurohypophysis
			prl	adenohypophysis
			tshba	adenohypophysis
Hong et al., 2008	Fig. 2		elavl3	neuron
			mych	presumptive rhombomere 4
Kim et al., 2008	Fig. 4		necab1	telencephalon
Liedtke et al., 2008	Fig. 2		her1	tail bud
			mdkb	brain
Pendeville et al., 2008	Fig. 6		efnb2a	(not) dorsal aorta
			sox7	dorsal aorta
			sox18	dorsal aorta
Aizawa et al., 2007	Fig. 5		kctd12.1	habenula
			kctd12.2	habenula
			pou4f1	habenula
Hsiao et al., 2007	Fig. 2		foxi3a	ectoderm
	Fig. 3		atp1b1b	epidermis
			ca2	epidermis
			foxi3a	ectoderm
	Fig. 5		dlc	ectoderm
Jänicke et al., 2007	Fig. 4		atp1b1b	NaK ionocyte
			atp6v1aa	vH ionocyte
			foxi3a	ionocyte progenitor cell
	Fig. 6		atp1b1b	NaK ionocyte
			atp6v1aa	vH ionocyte
Ma et al., 2007	Fig. 4		atp1a1a.2	pronephric duct
			atp1b1a	pronephric duct
			rfx2	pronephric duct
	Fig. 5		her9	pronephric duct
	Fig. 6		rfx2	pronephric duct
Millimaki et al., 2007	Fig. 4		atoh1a	otic placode
			atoh1b	otic placode
			dld	otic placode
Schafer et al., 2007	Fig. 3		foxa2	(not) lateral floor plate
			isl1a	neuron
			nkx2.2b	lateral floor plate
			tal2	medial floor plate
Stetsyuk et al., 2007	Fig. 3		ins	pancreatic bud
			kcnip3b	pancreatic bud
Tsutsumi et al., 2007	Fig. 3		elavl3	neural plate
			her4.1	neural plate
			nort	neural plate neural tube
Yeo et al., 2007	Fig. 5		her4.1	central nervous system
Zecchin et al., 2007	Fig. 1		gcga	pancreas
			ins	pancreas
			sst2	pancreas
	Fig. 2		mnx2a	pancreas
			prss1	pancreas
			ptf1a	pancreas
	Fig. 3		neurod1	endocrine pancreas gut
			neurog3	gut
			pax6b	endocrine pancreas gut
			pdx1	gut gut
	Fig. 4		gcga	pancreas
			slc15a1b	intestinal epithelium
Zhang et al., 2007	Fig. 1		col2a1a	hypochord
			dlc	hindbrain
			her4.1	(not) midbrain
	Fig. 2		dlc	segmental plate
			elavl3	neural keel
			her4.1	(not) diencephalon
	Fig. 4		her4.1	(not) midbrain
	Fig. 6		mib1	brain
	Fig. S1		elavl3	primary neuron
			her1	segmental plate
			isl1a	neural tube
	Fig. S3		mib1	brain
Covassin et al., 2006	Fig. 6		wu:fj67h05	(not) dorsal aorta
	Fig. 7		dab2	posterior cardinal vein
			plvapb	dorsal aorta
Song et al., 2006	Fig. S2		atoh1a	neuromast
Won et al., 2006	Fig. 4		camkvb	spinal cord
Bernardos et al., 2005	Fig. 1		alcama	retina
			rho	retina
	Fig. 3		gfap	(not) retina
			her6	lens
Burns et al., 2005	Fig. 1		gata1a	intermediate cell mass of mesoderm
			kdrl	dorsal aorta
			lcp1	rostral blood island
			mpx	rostral blood island
			myb	dorsal aorta
			rag1	thymus
			runx1	(not) dorsal aorta
			spi1b	rostral blood island
Chong et al., 2005	Fig. 5		id2a	hypothalamus
Crosnier et al., 2005	Fig. 5		dld	gut
Filippi et al., 2005	Fig. 4		olig4	neural plate
Gering et al., 2005	Fig. 6		efnb2a	(not) dorsal aorta
			hbbe1.1	intermediate cell mass of mesoderm
			kdrl	(not) dorsal aorta
			runx1	(not) intermediate cell mass of mesoderm
	Fig. S1		rag1	(not) thymus
Ishitani et al., 2005	Fig. 5		her1	segmental plate
			her4.1	neural plate
	Fig. S3		elavl3	neural plate
Kawamura et al., 2005	Fig. 2		ripply1	segmental plate
Lewis et al., 2005	Fig. 2		irx3a	primary motor neuron
Mavropoulos et al., 2005	Fig. 4		sox4b	pancreas primordium
Park et al., 2005	Fig. 1		cdkn1ca	unspecified
Schäfer et al., 2005	Fig. 4		isl1a	primary neuron
			shha	notochord
	Fig. 5		mdka	paraxial mesoderm
Yamaguchi et al., 2005	Fig. 8		her4.1	(not) retina
	Fig. 9		atoh7	retina
Bessarab et al., 2004	text only		six1b	unspecified
Cheng et al., 2004	text only		foxb1a	unspecified
			rfng	unspecified
Esni et al., 2004	Fig. 6		prss1	pancreas pancreatic bud
			ptf1a	pancreas primordium
Riley et al., 2004	Fig. 6		dla	hindbrain
			egr2b	rhombomere 5
			epha4a	rhombomere 5
			etv5b	hindbrain
			foxb1a	hindbrain
			hoxb1a	rhombomere 4
	Fig. 7		dla	hindbrain
			wnt1	hindbrain rhombomere
Zecchin et al., 2004	text only		ptf1a	unspecified
Bingham et al., 2003	text only		dld	unspecified
			egr2b	unspecified
			elavl3	unspecified
			evx1	unspecified
			gata3	unspecified
			hoxb1a	unspecified
			nkx2.2a	unspecified
			ntn1b	unspecified
			shha	unspecified
Choi et al., 2003	Fig. 4		celf2	telencephalon
Lawson et al., 2002	text only		kdrl	unspecified
			notch3	(not) unspecified
			vegfaa	unspecified
Oates et al., 2002	text only		dlc	unspecified
			her1	unspecified
			her7	unspecified
Lawson et al., 2001	Fig. 3		dlc	trunk neuron
			efnb2a	(not) dorsal aorta
			hey2	dorsal aorta
			notch3	(not) dorsal aorta
			tbx20	dorsal aorta dorsal side
	Fig. 4		ephb4a	dorsal aorta
			flt4	dorsal aorta
Sawada et al., 2000	Fig. 4		mespaa	paraxial mesoderm
			mespba	paraxial mesoderm
Gothilf et al., 1999	Fig. 4		aanat2	pineal complex
Halloran et al., 1999	Fig. 4		sema3d	(not) roof plate spinal cord region
Bally-Cuif et al., 1998	Fig. 4		ebf2	olfactory field
Haddon et al., 1998	Fig. 1		dla	hindbrain
			dlb	otic vesicle posterior region
			dld	otic placode otic vesicle posterior region
			jag2b	hindbrain
	Fig. 4		dla	neural plate
			dlb	neural plate
			dld	neural plate
Jiang et al., 1996	Fig. 2		pax2a	CoSA
	Fig. 3		ascl1a	hindbrain rhombomere 3
			ascl1b	rhombomere rhombomere 2
	Fig. 4		dct	trunk melanocyte
	Fig. 5		myf5	somite
			notch1a	segmental plate