SchemaSpy Analysis of zfindb.public Generated by
SchemaSpy
Generated by SchemaSpy on Tue Sep 15 16:40 PDT 2020
Database Type: PostgreSQL - 10.0 SourceForge.net


XML Representation
Insertion Order Deletion Order (for database loading/purging scripts)

Table / View Children Parents Columns Rows Comments
aa 5 111
abregistry 2 33
accession_bank 2 1 7 1,895,013
accession_version 2 37,820
affected_gene_group_member 4 41,682
alias_group 1 4 6
alias_scope 1 2 5
all_alias_tokens 1 2 54,257
all_anatomy_contains 3 34,597
all_term_contains 2 3 4,872,359
amsterdam_file 1 4 464
anatomy_display 2 5 13,370
anatomy_stats 6 437,594
annual_stats 5 1,403
antibody 1 6 6 3,489
antibody_type 1 1 2
apato_infrastructure 7 10 61,814
apato_tag 2 1 10
attribution_type 2 2 9
author 2 4 0
author_publication 2 3 0
average_curation_time_metric 26 42
average_time_per_person 5 0
bl_plate_tracking 3 2,712
blast_database 6 2 15 54
blast_database_origination_type 1 3 6
blast_database_type 1 1 2
blast_hit 2 13 252,452
blast_query 2 2 3 7,840
blast_report 1 4 9,431
blastdb_order 2 4 45
blastdb_regen_content 1 3 2,605
blastdb_run 2 2 0
burgess_location_post 5 70
candidate 1 1 7 44,410
chromosome 4 2 27
clean_expression_fast_search 2 3 34,797
clone 4 12 48,658
clone_problem_type 1 1 7
cnechr 4 113
cnechr1 7 113
cnedata 3 113
company 1 3 14 238
company_position 1 3 7
condition 1 1 9
condition_data_type 1 2 4 65
construct 3 2 7 5,686
construct_component 2 8 57,324
construct_figure 2 3 36
construct_marker_relationship 4 4 19,507
constructrel 4 71
constructreln 4 24
controlled_vocabulary 1 4 79
country_code 4 240
curation 4 8 460,486
curation_topic 1 1 23
curator_session 1 5 51,432
daily_indexed_metric 11 905
data_alias 2 4 6 673,520
data_note 3 5 6,735
data_reporting 4 299
database_info 4 2
databasechangelog 14 1,443
databasechangeloglock 4 1
db_link 3 3 7 971,262
disease_annotation 1 4 4 2,621
disease_annotation_model 2 3 1,559
do_oevdispupdate_temp_first 5 0
do_oevdispupdate_temp_second 5 0
doi_attempts 1 3 3,466
dupcrispr 6 19
eco_go_mapping 1 3 36
editconstruct 1 202
ensdar_mapping 3 57,369
ensdarg_ensdarp_mapping 4 44,487
ensdarg_ottdarg_mapping 2 0
ensdarg_post_proc 3 12,144
ensdart_name_mapping 6 28,699
ensdart_ottdart_mapping 2 39,237
entrez_gene 2 3 51,094
entrez_to_protein 1 4 724,386
entrez_to_xref 1 2 38,723
environment_group 3 29,250
execweb 2 3
experiment 3 2 3 19,131
experiment_condition 7 9 21,287
experiment_condition_restricted 3 4 0
expression_experiment 9 150,129
expression_experiment2 1 8 9 150,246
expression_experiment_bkup 9 150,087
expression_experiment_temp 9 150,129
expression_figure_stage 1 1 5 256,269
expression_pattern_assay 1 5 12
expression_pattern_figure 2 413,005
expression_pattern_figure_bkup 2 412,965
expression_pattern_figure_temp 2 413,005
expression_pattern_infrastructure 5 9 2,465
expression_phenotype_term 2 5 26,240
expression_phenotype_term_controlled_vocab 2 8
expression_result 9 413,005
expression_result2 1 3 5 413,254
expression_result_bkup 8 412,965
expression_result_temp 8 413,005
expression_search_anatomy_generated 3 10,977,321
expression_term_fast_search 5 239,937
external_note 3 5 41,543
external_note_type 1 2 6
external_reference 3 5 52,151
featmkr 4 12,381
feature 11 3 15 70,599
feature_assay 1 4 70,597
feature_audit 17 0
feature_community_contribution 2 10 10
feature_community_contribution_audit 8 10
feature_data 5 116
feature_dna_mutation_detail 4 14 39,904
feature_genomic_mutation_detail 2 7 38,879
feature_group 7 37,050
feature_group_member 7 391,336
feature_history 5 10 71,171
feature_marker_relationship 4 4 80,506
feature_marker_relationship_type 2 2 6 7
feature_prefix 2 4 517
feature_protein_mutation_detail 4 11 2,088
feature_stats 10 624,710
feature_stats_old 10 624,668
feature_tracking 5 54,752
feature_transcript_mutation_detail 3 5 37,906
feature_type 4 3 12
feature_type_group 2 2 12
feature_type_group_member 2 2 23
feature_type_mutagen_group_member 2 3 105
feature_type_ordering 3 18
featuredata 3 638
featuregenedata 3 20
featurenogenedata 1 7
featurezmp 2 6
featurezmpdata 3 5
fest_lib_inst 1 4 769
figure 4 2 10 116,757
fish 4 2 11 43,476
fish_components 7 66,551
fish_experiment 5 3 5 51,528
fish_genox 3 29,250
fish_str 2 2 20,099
fishmisfortune 10 197,137
foreign_db 3 6 77
foreign_db_contains 8 4 5 85
foreign_db_contains_display_group 1 3 21
foreign_db_contains_display_group_member 1 3 103
foreign_db_data_type 1 4 15
ftrconsequence 2 1,509
ftrconsequencenew 3 73,564
ftrmutdets 3 811
ftrmutdetssanger 3 39,862
gene_description 1 12 24,005
genedom_family_member 2 2 0
genedom_family_name 1 1 192
geneprefix_institution 1 2 10
genotype 7 1 10 28,321
genotype_background 2 2 9,289
genotype_component_significance 2 5 49
genotype_feature 6 6 38,069
genotype_figure_fast_search 4 9 122,782
genotype_group 4 13,773
genotype_group_member 5 0
genox_fish_annotation_search 3 0
genox_fish_annotation_search_bkup 3 17,185
genox_fish_annotation_search_temp 3 0
genox_group 3 0
genox_group_member 4 0
gff3 12 1,569,629
go_evidence_code 3 17
go_flag 1 2 3
go_ontology 1 3 3
go_term 2 6 33,559
heavy_chain_isotype 1 1 19
htp_category_tag 1 2 4
htp_dataset 3 1 6 9
htp_dataset_alternate_identifier 3 9
htp_dataset_category_tag 2 3 23
htp_dataset_publication 2 3 14
htp_dataset_sample 3 13 169
htp_dataset_sample_detail 6 8 169
human_gene_detail 1 3 16,257
image 3 7 23 122,554
image_direction 1 1 11
image_form 1 1 5
image_preparation 1 1 6
image_stage 3 3 33,854
image_view 1 1 14
inference_group_member 1 3 691,725
inputensdarg 1 17,668
int_data_source 2 3 110,269
int_data_supplier 2 4 85,170
int_fdbcont_analysis_tool 1 2 88
int_image_term 2 2 561
int_person_company 3 5 163
int_person_lab 3 5 5,603
int_person_pub 2 5 57,182
int_vegatype_tscripttype 1 2 20
interpro_protein 1 1 3 37,821
journal 1 1 12 2,827
lab 3 3 14 1,401
lab_address_update_tracking 1 4 369
lab_position 1 3 10
light_chain_isotype 1 1 13
lines 1 78
lines_tmp 1 63
linkage 1 3 5 15,143
linkage_group 3 2 27
linkage_member 2 1 2 17,353
linkage_member_temp 3 5,843
linkage_membership 2 8 6,659
linkage_membership_search 3 8 13,318
linkage_membership_search_bkup 8 13,318
linkage_membership_search_temp 8 13,318
linkage_old 2 3 4 15,143
linkage_pair 1 2 5 822
linkage_pair_member 3 3 1,644
linkage_single 2 3 16,166
linkages_copy 5 454
longest_bin_resident_metric 5 1,180
map_metric 4 3 4
mapped_marker 5 15 26,973
marker 22 3 8 171,279
marker_go_term_annotation_extension 2 6 2,105,267
marker_go_term_annotation_extension_group 1 1 2 2,105,237
marker_go_term_evidence 3 9 15 246,234
marker_go_term_evidence_annotation_created_by_source 3 6
marker_go_term_evidence_annotation_organization 1 4 6
marker_history 5 10 228,875
marker_history_audit 1 7 276,575
marker_history_event 2 1 5
marker_history_reason 2 1 7
marker_relationship 4 5 195,842
marker_relationship_type 2 2 5 32
marker_sequence 2 7 17,018
marker_to_protein 2 3 56,830
marker_type_group 4 4 88
marker_type_group_member 2 2 396
marker_types 2 3 59
merge_markers_sql 4 24,065
mesh_heading 1 2 4 431,327
mesh_heading_qualifier 2 3 333,653
mesh_term 2 3 29,716
missing_varseq 3 301
missing_xpatfig 2 33
monthly_average_curated_metric 20 56
monthly_curated_metric 13 10,771
mutagee 1 5
mutagen 1 1 12
mutant_fast_search 2 2 40,705
mutation_detail_controlled_vocabulary 3 1 5 68
name_precedence 3 19
ncbi_ortholog 2 1 6 158,574
ncbi_ortholog_alias 1 3 59,757
ncbi_ortholog_external_reference 2 4 381,018
newfeaturedata 2 64
noctua_model 1 75
noctua_model_annotation 1 2 503
obsolete_term_replacement 2 3 806
obsolete_term_suggestion 2 3 2,077
omim_phenotype 1 2 5 20,284
omimp_termxref_mapping 2 2 13,725
one_to_one_accession 2 4 15,223
ontology 1 10 19
ontology_subset 2 5 108
organism 5 6 42
ortholog 3 2 8 30,815
ortholog_evidence 3 4 70,359
ortholog_evidence_code 1 3 7
ortholog_external_reference 2 3 114,142
ortholog_load_tracking 7 216
panel_count 3 5 608
paneled_markers 1 10 38,522
panels 1 3 19 7
person 37 1 21 9,210
person_author 3 5 0
pg_stat_statements 23 view
pheno_term 10 123,066
pheno_term_fast_search 7 2,768,532
pheno_term_fast_search_tmp 7 2,768,532
pheno_term_old 10 75,042
phenotype_experiment 1 4 7 66,031
phenotype_figure_group 5 18,419
phenotype_figure_group_member 4 37,196
phenotype_generated_curated_mapping 3 87,495
phenotype_generated_curated_mapping_bkup 3 87,474
phenotype_generated_curated_mapping_temp 3 87,495
phenotype_observation_generated 20 179,435
phenotype_observation_generated_bkup 20 179,411
phenotype_observation_generated_temp 20 179,435
phenotype_source_generated 5 73,163
phenotype_source_generated_bkup 5 73,148
phenotype_source_generated_temp 5 73,163
phenotype_statement 7 10 153,348
pmflankseq 5 36,815
post_aud 1 4 0
pre_db_link 5 1,823
pre_feature_marker_relationship 4 1
primer_set 2 11 7,460
probe_lib 14 33
probe_library 5 14 103
processing_checklist_task 1 2 3
protein 3 2 3 56,814
protein_to_interpro 2 5 211,067
protein_to_pdb 1 3 203
pub_correspondence_received_email 2 10 3,418
pub_correspondence_recipient 2 6 4,115
pub_correspondence_sent_email 2 2 7 4,146
pub_correspondence_sent_email_contains_subject 2 0
pub_correspondence_sent_tracker 3 7 10,274
pub_correspondence_subject 4 3
pub_db_xref 2 4 1,171
pub_tracking_history 5 10 137,059
pub_tracking_location 1 6 14
pub_tracking_status 1 8 21
publication 24 3 30 42,318
publication_contact_tracking 2 6 0
publication_correspondence 2 6 651
publication_file 2 6 46,868
publication_file_type 1 3 5
publication_note 3 5 38,567
publication_processing_checklist 3 5 11,628
pubmed_publication_author 1 6 234,615
record_attribution 2 5 3,311,321
remove_phenos_ids 1 27
replaced_accession_number 2 1,451
return_recs 9 1,749
revinfo 1 2 0
run 2 5 9 12
run_candidate 1 2 6 5,961
run_program 1 3 5
run_type 1 1 2
sanger_flanking_sequence 5 37,613
sanger_flanking_sequence_post_proc 4 35,210
sanger_location 4 112,614
sanger_location_post 5 111,476
sangerfeatures 1 54
sequence_ambiguity_code 1 2 11
sequence_feature_chromosome_location 4 8 112,851
sequence_feature_chromosome_location_bkup 9 98,953
sequence_feature_chromosome_location_generated 1 13 442,205
sequence_feature_chromosome_location_generated_bkup 10 154,313
sequence_feature_chromosome_location_generated_temp 10 154,313
sequence_feature_chromosome_location_temp 9 98,953
sequence_type 2 2 6
seqvar 11 1,620
single 1 1
snp_download 1 3 2,681,136
snp_download_attribution 2 2,680,981
snp_sequence 1 8 2,024
so_zfin_mapping 1 4 72
source_alias 2 4 3,678
source_feature_prefix 2 3 1,108
source_url 2 4 24
source_url_purpose 1 2 2
stage 8 1 9 45
state_code 3 59
str_group 3 12,173
tables_in_trouble 6 view
term 45 3 12 218,797
term_group 5 20,333
term_relationship 4 4 459,459
term_relationship_type 1 1 117
term_stage 2 3 3,058
term_subset 2 2 144,426
term_xref 1 2 6 370,444
tmp_addgene 4 2
tmp_all_term_contains 3 44,936
tmp_betterfishdump 4 3
tmp_db_link 7 0
tmp_efs_map 5 12,580,214
tmp_esag_predistinct 5 14,504,222
tmp_expression_phenotype_term 5 8
tmp_feature 6 694
tmp_figure 1 13,726
tmp_genox_restore 5 0
tmp_ncbi_ensembl 5 26,258
tmp_ortholog_external_reference 3 37,079
tmp_ottens 4 2,000
tmp_pub 1 4,574
tmp_pub2 1 76
tmp_pub3 1 0
tmp_pub5 1 1,385
tmp_seqref 4 36,815
tmp_to_convert 1 887
tmp_zeco_tt 8 4,249
tmpcne 7 113
transcript 1 3 5 44,455
transcript_sequence 1 3 1,074
transcript_status 2 4 18
transcript_type 3 7 19
tscript_type_status_definition 2 4 18
tscriptens 3 1,039
tscriptens1 3 1,518
tscriptsequence 3 1,113
unique_location 2 170,443
updates 9 1,618,815
url_ref 1 4 1
validate_check_history 3 84
variant_flanking_sequence 1 11 39,450
vector 1 1 2 68
vector_type 1 2 14
video 1 3 389
warehouse_run_tracking 4 5
withdrawn_data 4 11,482
xpat_exp_details_generated 10 142,611
xpat_exp_details_generated_bkup 10 142,551
xpat_exp_details_generated_temp 10 0
xpat_figure_group 5 15,859
xpat_figure_group_member 4 27,885
xpat_results_generated 11 308,425
xpat_results_generated_bkup 11 308,334
xpat_results_generated_temp 11 0
xpatfs_old 5 231,946
zdb_active_data 79 1 5,145,354
zdb_active_source 16 1 59,672
zdb_flag 3 14
zdb_object_type 7 122
zdb_orphan_data 1 3 0
zdb_orphan_source 1 3 0
zdb_replaced_data 1 4 35,355
zdb_submitters 1 1 13 9,210
zebrashare_data_edit_permission 2 4 28
zebrashare_submission_metadata 3 5 6
zfa_uberon_mapping 3 55
zfin_accession_number 4 2,694
zfin_ensembl_gene 10 23,358
zmap_pub_pan_mark 3 14 35,840
zygocity 3 1 7 5
           
430 Tables     2,298 94,241,910  
2 Views     29