Gene

vclb

ID
ZDB-GENE-131017-1
Name
vinculin b
Symbol
vclb Nomenclature History
Previous Names
None
Type
protein_coding_gene
Location
Chr: 12 Mapping Details/Browsers
Description
Predicted to enable alpha-catenin binding activity and beta-catenin binding activity. Acts upstream of or within coronary vasculature morphogenesis. Located in adherens junction. Is expressed in mesenchyme pectoral fin; pericardial region; and somite border. Human ortholog(s) of this gene implicated in dilated cardiomyopathy; dilated cardiomyopathy 1W; hypertrophic cardiomyopathy; and hypertrophic cardiomyopathy 15. Orthologous to human VCL (vinculin).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
6 figures from 4 publications
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
No data available
Wild Type Expression Summary
Phenotype
All Phenotype Data
8 figures from Cheng et al., 2016
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Sequence Targeting Reagents
Human Disease
Associated With vclb Human Ortholog
Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
dilated cardiomyopathy 1W Alliance Cardiomyopathy, dilated, 1W 611407
hypertrophic cardiomyopathy 15 Alliance Cardiomyopathy, hypertrophic, 15 613255
1 - 2 of 2
Associated With vclb Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Conserved_site IPR000633 Vinculin, conserved site
Family IPR006077 Vinculin/alpha-catenin
Family IPR017997 Vinculin
Homologous_superfamily IPR036723 Alpha-catenin/vinculin-like superfamily
1 - 4 of 4
Domain Details Per Protein
Protein Length Alpha-catenin/vinculin-like superfamily Vinculin Vinculin/alpha-catenin Vinculin, conserved site
UniProtKB:A0A0S2I7K2 1066
1 - 1 of 1
Transcripts
Genome Browsers
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA vclb-201 (1) Ensembl 3,124 nt
1 - 1 of 1
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
Constructs
Marker Relationships
Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Citations