Gene

sox9b

ID
ZDB-GENE-001103-2
Name
SRY-box transcription factor 9b
Symbol
sox9b Nomenclature History
Previous Names
  • fb18d01
  • wu:fb18d01 (1)
Type
protein_coding_gene
Location
Chr: 3 Mapping Details/Browsers
Description
Predicted to have DNA-binding transcription activator activity, RNA polymerase II-specific. Involved in several processes, including animal organ development; embryonic pectoral fin morphogenesis; and iridophore differentiation. Predicted to localize to nucleus. Human ortholog(s) of this gene implicated in 46,XX sex reversal 2; 46,XY sex reversal 10; and campomelic dysplasia. Is expressed in several structures, including digestive system; head; nervous system; neural crest; and pleuroperitoneal region. Orthologous to human SOX9 (SRY-box transcription factor 9).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
124 figures from 96 publications
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
22 figures from 10 publications
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Sequence Targeting Reagents
Human Disease
Associated With sox9b Human Ortholog
Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
46,XX sex reversal 2 Alliance 46XX sex reversal 2 278850
46,XY sex reversal 10 Alliance 46XY sex reversal 10 616425
campomelic dysplasia Alliance Acampomelic campomelic dysplasia 114290
campomelic dysplasia Alliance Campomelic dysplasia 114290
campomelic dysplasia Alliance Campomelic dysplasia with autosomal sex reversal 114290
Associated With sox9b Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR009071 High mobility group box domain
Domain IPR022151 Sox developmental protein N-terminal
Family IPR050917 SOX Transcription Factors
Homologous_superfamily IPR036910 High mobility group box domain superfamily
Domain Details Per Protein
Protein Length High mobility group box domain High mobility group box domain superfamily Sox developmental protein N-terminal SOX Transcription Factors
UniProtKB:Q9DFH1 407
Transcripts
Genome Browsers
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA sox9b-201 (1) Ensembl 3,419 nt
mRNA sox9b-202 (1) Ensembl 864 nt
Interactions and Pathways
No data available
Antibodies
Name Type Antigen Genes Isotype Host Organism Assay Source Citations
Ab2-sox9b Rabbit
  • IHC
  • WB
1
Plasmids
Constructs
Marker Relationships
Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Citations