ZFIN is now using GRCz12tu for Genomic Data
Gene
rag1
- ID
- ZDB-GENE-990415-234
- Name
- recombination activating 1
- Symbol
- rag1 Nomenclature History
- Previous Names
-
- etID309719.25 (1)
- recombinase
- Type
- protein_coding_gene
- Location
- Chr: 25 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Enables magnesium ion binding activity and sequence-specific DNA binding activity. Contributes to double-stranded DNA endonuclease activity. Acts upstream of or within V(D)J recombination and protein-DNA complex assembly. Part of DNA recombinase complex and endodeoxyribonuclease complex. Is expressed in several structures, including gonad; hematopoietic cell; hypophysis; immune system; and ventral wall of dorsal aorta. Human ortholog(s) of this gene implicated in Omenn syndrome; combined cellular and humoral immune defects with granulomas; severe combined immunodeficiency; and severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, Nk cell-positive. Orthologous to human RAG1 (recombination activating 1).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 290 figures from 200 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- 19 figures from 8 publications
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
| Disease Ontology Term | Multi-Species Data | OMIM Term | OMIM Phenotype ID |
|---|---|---|---|
| combined cellular and humoral immune defects with granulomas | Alliance | Combined cellular and humoral immune defects with granulomas | 233650 |
| Omenn syndrome | Alliance | Omenn syndrome | 603554 |
| severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, Nk cell-positive | Alliance | Severe combined immunodeficiency, B cell-negative | 601457 |
| Alpha/beta T-cell lymphopenia with gamma/delta T-cell expansion, severe cytomegalovirus infection, and autoimmunity | 609889 |
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Conserved_site | IPR017907 | Zinc finger, RING-type, conserved site |
| Domain | IPR001841 | Zinc finger, RING-type |
| Domain | IPR018957 | Zinc finger, C3HC4 RING-type |
| Domain | IPR019485 | V(D)J recombination-activating protein 1, Zinc finger |
| Domain | IPR023336 | RAG nonamer-binding domain |
| Domain | IPR035714 | RAG1 importin-binding |
| Domain | IPR058552 | V(D)J recombination-activating protein 1, DNA-binding domain |
| Domain | IPR058553 | V(D)J recombination-activating protein 1, pre-RNase H domain |
| Domain | IPR058554 | V(D)J recombination-activating protein 1, RNase H domain |
| Domain | IPR058555 | V(D)J recombination-activating protein 1, ZnC2 domain |
| Domain | IPR058556 | V(D)J recombination-activating protein 1, ZnH2 domain |
| Domain | IPR058557 | V(D)J recombination-activating protein 1, C-terminal domain |
| Domain | IPR058558 | V(D)J recombination-activating protein 1, RING finger, HC subclass |
| Family | IPR024627 | V(D)J recombination-activating protein 1 |
| Homologous_superfamily | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
Domain Details Per Protein
| Protein | Additional Resources | Length | RAG1 importin-binding | RAG nonamer-binding domain | V(D)J recombination-activating protein 1 | V(D)J recombination-activating protein 1, C-terminal domain | V(D)J recombination-activating protein 1, DNA-binding domain | V(D)J recombination-activating protein 1, pre-RNase H domain | V(D)J recombination-activating protein 1, RING finger, HC subclass | V(D)J recombination-activating protein 1, RNase H domain | V(D)J recombination-activating protein 1, Zinc finger | V(D)J recombination-activating protein 1, ZnC2 domain | V(D)J recombination-activating protein 1, ZnH2 domain | Zinc finger, C3HC4 RING-type | Zinc finger, RING/FYVE/PHD-type | Zinc finger, RING-type | Zinc finger, RING-type, conserved site |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| UniProtKB:O13033 | InterPro PDB | 1057 | |||||||||||||||
| UniProtKB:F1QD74 | InterPro | 1057 | |||||||||||||||
| UniProtKB:A0AC58IUB4 | InterPro | 1057 | |||||||||||||||
| UniProtKB:A0AC58IUB8 | InterPro | 1057 | |||||||||||||||
| UniProtKB:A0AC58IUC1 | InterPro | 1057 | |||||||||||||||
| UniProtKB:A0AC58IUD5 | InterPro | 1057 | |||||||||||||||
| UniProtKB:A0ACD6B663 | InterPro | 1057 |
- Genome Browsers
Interactions and Pathways
No data available
Plasmids
- Genome Browsers