ZFIN is now using GRCz12tu for Genomic Data
Gene
elavl3
- ID
- ZDB-GENE-980526-76
- Name
- ELAV like neuron-specific RNA binding protein 3
- Symbol
- elavl3 Nomenclature History
- Previous Names
- Type
- protein_coding_gene
- Location
- Chr: 3 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable RNA binding activity. Acts upstream of or within regulation of neurogenesis. Predicted to be part of ribonucleoprotein complex. Is expressed in several structures, including nervous system; neural plate; neural tube; neuronal stem cell; and presumptive structure. Orthologous to human ELAVL3 (ELAV like RNA binding protein 3).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 164 figures from 119 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- 1 Figure from Coolen et al., 2012
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR000504 | RNA recognition motif domain |
| Domain | IPR003954 | RNA recognition motif domain, eukaryotes |
| Domain | IPR034915 | HuC, RNA recognition motif 3 |
| Family | IPR002343 | Paraneoplastic encephalomyelitis antigen |
| Family | IPR006548 | Splicing factor ELAV/Hu |
| Homologous_superfamily | IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
| Homologous_superfamily | IPR035979 | RNA-binding domain superfamily |
Domain Details Per Protein
| Protein | Additional Resources | Length | HuC, RNA recognition motif 3 | Nucleotide-binding alpha-beta plait domain superfamily | Paraneoplastic encephalomyelitis antigen | RNA-binding domain superfamily | RNA recognition motif domain | RNA recognition motif domain, eukaryotes | Splicing factor ELAV/Hu |
|---|---|---|---|---|---|---|---|---|---|
| UniProtKB:A0A8M6YUY6 | InterPro | 346 | |||||||
| UniProtKB:A0A8M2BBS5 | InterPro | 365 | |||||||
| UniProtKB:A0A0R4IC33 | InterPro | 358 | |||||||
| UniProtKB:A0A8M3AYA7 | InterPro | 366 | |||||||
| UniProtKB:A0A8M6YXB4 | InterPro | 353 | |||||||
| UniProtKB:Q6P105 | InterPro | 359 | |||||||
| UniProtKB:P79736 | InterPro | 345 | |||||||
| UniProtKB:A0A8M6Z446 | InterPro | 352 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
elavl3-201
(1)
|
Ensembl | 1,120 nt | ||
| mRNA |
elavl3-202
(1)
|
Ensembl | 3,227 nt | ||
| mRNA |
elavl3-204
(1)
|
Ensembl | 530 nt | ||
| mRNA |
elavl3-205
(1)
|
Ensembl | 4,469 nt | ||
| ncRNA |
elavl3-003
(1)
|
Ensembl | 863 nt |
Interactions and Pathways
No data available
| Name | Type | Antigen Genes | Isotype | Host Organism | Assay | Source | Citations |
|---|---|---|---|---|---|---|---|
| Ab1-elavl | monoclonal | IgG2b | Mouse |
|
Santa Cruz Biotechnology, Inc.
Life Technologies (Invitrogen) Abcam plc MoBiTec Molecular Biotechnology Molecular Probes, Inc. |
511 |
Plasmids
- Genome Browsers