ZFIN is now using GRCz12tu for Genomic Data
Gene
ripply1
- ID
- ZDB-GENE-060113-1
- Name
- ripply transcriptional repressor 1
- Symbol
- ripply1 Nomenclature History
- Previous Names
- None
- Type
- protein_coding_gene
- Location
- Chr: 21 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Involved in negative regulation of DNA-templated transcription and somite rostral/caudal axis specification. Acts upstream of or within regulation of skeletal muscle tissue development and somite specification. Located in nucleus. Is expressed in several structures, including margin; paraxial mesoderm; presumptive paraxial mesoderm; shield; and somite. Human ortholog(s) of this gene implicated in spondylocostal dysostosis 6. Orthologous to several human genes including RIPPLY2 (ripply transcriptional repressor 2).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 21 figures from 16 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- 19 figures from 5 publications
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Family | IPR028127 | Ripply family |
Domain Details Per Protein
| Protein | Additional Resources | Length | Ripply family |
|---|---|---|---|
| UniProtKB:B3DGI6 | InterPro | 140 | |
| UniProtKB:Q2WG80 | InterPro | 140 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
ripply1-202
(1)
|
Ensembl | 1,253 nt | ||
| mRNA |
ripply1-204
(1)
|
Ensembl | 872 nt | ||
| mRNA |
ripply1-205
(1)
|
Ensembl | 1,374 nt | ||
| ncRNA |
ripply1-003
(1)
|
Ensembl | 850 nt | ||
| ncRNA |
ripply1-004
(1)
|
Ensembl | 823 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers