Aamar, E., and Dawid, I.B. (2008) Protocadherin-18a has a role in cell adhesion, behavior and migration in zebrafish development. Developmental Biology. 318(2):335-346

Ablooglu, A.J., Tkachenko, E., Kang, J., and Shattil, S.J. (2010) Integrin alphaV is necessary for gastrulation movements that regulate vertebrate body asymmetry. Development (Cambridge, England). 137(20):3449-3458

Ahn, H.J., Park, Y., Kim, S., Park, H.C., Seo, S.K., Yeo, S.Y., and Geum, D. (2010) The expression profile and function of Satb2 in zebrafish embryonic development. Molecules and cells. 30(4):377-382

Alaniz Emig, A., Williams, M.L.K. (2021) Generation of Naïve Blastoderm Explants from Zebrafish Embryos. Journal of visualized experiments : JoVE. (173):

Alexander, J., Rothenberg, M., Henry, G.L., and Stainier, D.Y.R. (1999) casanova plays an early and essential role in endoderm formation in zebrafish. Developmental Biology. 215(2):343-357

Amacher, S.L. and Kimmel, C.B. (1998) Promoting notochord fate and repressing muscle development in zebrafish axial mesoderm. Development (Cambridge, England). 125:1397-1406

Amack, J.D., and Yost, H.J. (2004) The T box transcription factor no tail in ciliated cells controls zebrafish left-right asymmetry. Current biology : CB. 14(8):685-690

Amemiya, C.T., Alfoldi, J., Lee, A.P., Fan, S., Philippe, H., MacCallum, I., Braasch, I., Manousaki, T., Schneider, I., Rohner, N., Organ, C., Chalopin, D., Smith, J.J., Robinson, M., Dorrington, R.A., Gerdol, M., Aken, B., Biscotti, M.A., Barucca, M., Baurain, D., Berlin, A.M., Blatch, G.L., Buonocore, F., Burmester, T., Campbell, M.S., Canapa, A., Cannon, J.P., Christoffels, A., de Moro, G., Edkins, A.L., Fan, L., Fausto, A.M., Feiner, N., Forconi, M., Gamieldien, J., Gnerre, S., Gnirke, A., Goldstone, J.V., Haerty, W., Hahn, M.E., Hesse, U., Hoffmann, S., Johnson, J., Karchner, S.I., Karaku, S., Lara, M., Levin, J.Z., Litman, G.W., Mauceli, E., Miyake, T., Mueller, M.G., Nelson, D.R., Nitsche, A., Olmo, E., Ota, T., Pallavicini, A., Panji, S., Picone, B., Ponting, C.P., Prohaska, S.J., Przybylski, D., Saha, N.R., Ravi, V., Ribeiro, F.J., Sauka-Spengler, T., Scapigliati, G., Searle, S.M.J., Sharpe, T., Simakov, O., Stadler, P.F., Stegeman, J.J., Sumiyama, K., Tabbaa, D., Tafer, H., Turner-Maier, J., van Heusden, P., White, S., Williams, L., Yandell, M., Brinkmann, H., Volff, J.N., Tabin, C.J., Shubin, N., Schartl, M., Jaffe, D.B., Postlethwait, J.H., Venkatesh, B., Palma, F.D., Lander, E.S., Meyer, A., and Lindblad-Toh, K. (2013) The African coelacanth genome provides insights into tetrapod evolution. Nature. 496:311-316

Ando, K., Fukuhara, S., Izumi, N., Nakajima, H., Fukui, H., Kelsh, R.N., Mochizuki, N. (2016) Clarification of mural cell coverage of vascular endothelial cells by live imaging of zebrafish. Development (Cambridge, England). 143(8):1328-39

Appel, B., Fritz, A., Westerfield, M., Grunwald, D.J., Eisen, J.S., and Riley, B.B. (1999) Delta-mediated specification of midline cell fates in zebrafish embryos. Current biology : CB. 9:247-256

Araya, C., Tawk, M., Girdler, G.C., Costa, M., Carmona-Fontaine, C., and Clarke, J.D. (2014) Mesoderm is required for coordinated cell movements within zebrafish neural plate in vivo. Neural Development. 9(1):9

Arrington, C.B., Peterson, A.G., and Yost, H.J. (2013) Sdc2 and Tbx16 regulate Fgf2-dependent epithelial cell morphogenesis in the ciliated organ of asymmetry. Development (Cambridge, England). 140(19):4102-4109

Asaduzzaman, M., Shakur Ahammad, A.K., Asakawa, S., Kinoshita, S., Watabe, S. (2016) 5′-flanking sequences of zebrafish fast myosin heavy chain genes regulate unique expression in the anterior, medial subsection and posterior tail somites of the skeletal muscle. Comparative biochemistry and physiology. Part B, Biochemistry & molecular biology. 191:1-12

Ata, H., Ekstrom, T.L., Martínez-Gálvez, G., Mann, C.M., Dvornikov, A.V., Schaefbauer, K.J., Ma, A.C., Dobbs, D., Clark, K.J., Ekker, S.C. (2018) Robust Activation of Microhomology-mediated End Joining for Precision Gene Editing Applications. PLoS Genetics. 14:e1007652

Azuma, M., Embree, L.J., Sabaawy, H., and Hickstein, D.D. (2007) Ewing sarcoma protein ewsr1 maintains mitotic integrity and proneural cell survival in the zebrafish embryo. PLoS One. 2(10):e979

Bajard, L., Morelli, L.G., Ares, S., Pécréaux, J., Jülicher, F., Oates, A.C. (2014) Wnt-regulated dynamics of positional information in zebrafish somitogenesis. Development (Cambridge, England). 141:1381-91

Bakkers, J., Kramer, C., Pothof, J., Quaedvlieg, N.E., Spaink, H.P., and Hammerschmidt, M. (2004) Has2 is required upstream of Rac1 to govern dorsal migration of lateral cells during zebrafish gastrulation. Development (Cambridge, England). 131(3):525-537

Bardet, P.L., Horard, B., Laudet, V., and Vanacker, J.M. (2005) The ERRalpha orphan nuclear receptor controls morphogenetic movements during zebrafish gastrulation. Developmental Biology. 281(1):102-111

Barth, K.A., Kishimoto, Y., Rohr, K.B., Seydler, C., Schulte-Merker, S., and Wilson, S.W. (1999) Bmp activity establishes a gradient of positional information throughout the entire neural plate. Development (Cambridge, England). 126(22):4977-4987

Begemann, G., Schilling, T.F., Rauch, G.J., Geisler, R., and Ingham, P.W. (2001) The zebrafish neckless mutation reveals a requirement for raldh2 in mesodermal signals that pattern the hindbrain. Development (Cambridge, England). 128(16):3081-3094

Beis, D., and Stainier, D.Y. (2006) In vivo cell biology: following the zebrafish trend. Trends in cell biology. 16(2):105-112

Belting, H.G., Wendik, B., Lunde, K., Leichsenring, M., Mössner, R., Driever, W., and Onichtchouk, D. (2011) Pou5f1 contributes to dorsoventral patterning by positive regulation of vox and modulation of fgf8a expression. Developmental Biology. 356(2):323-36

Besser, J., Leito, J.T., van der Meer, D.L., and Bagowski, C.P. (2007) Tip-1 induces filopodia growth and is important for gastrulation movements during zebrafish development. Development, growth & differentiation. 49(3):205-214

Bian, S.S., Zheng, X.L., Sun, H.Q., Chen, J.H., Lu, Y.L., Liu, Y.Q., Tao, D.C., Ma, Y.X. (2017) Clock1a affects mesoderm development and primitive hematopoiesis by regulating Nodal-Smad3 signalings in the zebrafish embryo. The Journal of biological chemistry. 292(34):14165-14175

Bisgrove, B.W., Essner, J.J., and Yost, H.J. (1999) Regulation of midline development by antagonism of lefty and nodal signaling. Development (Cambridge, England). 126(14):3253-3262

Bisgrove, B.W., Morelli, S.H., and Yost, H.J. (2003) Genetics of human laterality disorders: insights from vertebrate model systems. Annual review of genomics and human genetics. 4:1-32

Bisgrove, B.W., Su, Y.C., Yost, H.J. (2017) Maternal Gdf3 is an obligatory cofactor in nodal signaling for embryonic axis formation in zebrafish. eLIFE. 6

Blanco, M.J., Barrallo-Gimeno, A., Acloque, H., Reyes, A.E., Tada, M., Allende, M.L., Mayor, R., and Nieto, M.A. (2007) Snail1a and Snail1b cooperate in the anterior migration of the axial mesendoderm in the zebrafish embryo. Development (Cambridge, England). 134(22):4073-4081

Boggetti, B., Jasik, J., Takamiya, M., Strähle, U., Reugels, A.M., and Campos-Ortega, J.A. (2012) NBP, a zebrafish homolog of human Kank3, is a novel Numb interactor essential for epidermal integrity and neurulation. Developmental Biology. 365(1):164-174

Borovina, A., and Ciruna, B. (2013) IFT88 Plays a Cilia- and PCP-Independent Role in Controlling Oriented Cell Divisions during Vertebrate Embryonic Development. Cell Reports. 5(1):37-43

Bouldin, C.M., Manning, A.J., Peng, Y.H., Farr, G.H., Hung, K.L., Dong, A., Kimelman, D. (2015) Wnt signaling and tbx16 form a bistable switch to commit bipotential progenitors to mesoderm. Development (Cambridge, England). 142:2499-507

Bruneau, S. and Rosa, F.M. (1997) Dynamo, a new zebrafish DVR member of the TGF-b superfamily is expressed in the posterior neural tube and is up-regulated by Sonic hedgehog. Mechanisms of Development. 61(1-2):199-212

Brunt, L., Greicius, G., Rogers, S., Evans, B.D., Virshup, D.M., Wedgwood, K.C.A., Scholpp, S. (2021) Vangl2 promotes the formation of long cytonemes to enable distant Wnt/β-catenin signaling. Nature communications. 12:2058

Bugel, S.M., Wehmas, L.C., La Du, J.K., Tanguay, R.L. (2016) Phenotype anchoring in zebrafish reveals a potential role for matrix metalloproteinases (MMPs) in tamoxifen's effects on skin epithelium. Toxicology and applied pharmacology. 296:31-41

Burdine, R.D., Grimes, D.T. (2016) Antagonistic interactions in the zebrafish midline prior to the emergence of asymmetric gene expression are important for left-right patterning. Philosophical transactions of the Royal Society of London. Series B, Biological sciences. 371(1710)

Cadwalader, E.L., Condic, M.L., and Yost, H.J. (2012) 2-O-sulfotransferase regulates Wnt signaling, cell adhesion and cell cycle during zebrafish epiboly. Development (Cambridge, England). 139(7):1296-1305

Caneparo, L., Huang, Y.L., Staudt, N., Tada, M., Ahrendt, R., Kazanskaya, O., Niehrs, C., and Houart, C. (2007) Dickkopf-1 regulates gastrulation movements by coordinated modulation of Wnt/betacatenin and Wnt/PCP activities, through interaction with the Dally-like homolog Knypek. Genes & Development. 21(4):465-480

Caron, A., Xu, X., and Lin, X. (2012) Wnt/β-catenin signaling directly regulates Foxj1 expression and ciliogenesis in zebrafish Kupffer’s vesicle. Development (Cambridge, England). 139(3):514-24

Carreira-Barbosa, F., Kajita, M., Morel, V., Wada, H., Okamoto, H., Martinez Arias, A., Fujita, Y., Wilson, S.W., and Tada, M. (2009) Flamingo regulates epiboly and convergence/extension movements through cell cohesive and signalling functions during zebrafish gastrulation. Development (Cambridge, England). 136(3):383-392

Cast, A.E., Gao, C., Amack, J.D., and Ware, S.M. (2012) An essential and highly conserved role for Zic3 in left-right patterning, gastrulation and convergent extension morphogenesis. Developmental Biology. 364(1):22-31

Castanon, I., Hannich, J.T., Abrami, L., Huber, F., Dubois, M., Müller, M., van der Goot, F.G., Gonzalez-Gaitan, M. (2020) Wnt-controlled sphingolipids modulate Anthrax Toxin Receptor palmitoylation to regulate oriented mitosis in zebrafish. Nature communications. 11:3317

Castro-González, C., Luengo-Oroz, M.A., Duloquin, L., Savy, T., Rizzi, B., Desnoulez, S., Doursat, R., Kergosien, Y.L., Ledesma-Carbayo, M.J., Bourgine, P., Peyriéras, N., Santos, A. (2014) A Digital Framework to Build, Visualize and Analyze a Gene Expression Atlas with Cellular Resolution in Zebrafish Early Embryogenesis. PLoS Computational Biology. 10:e1003670

Cha, Y.I., Kim, S.H., Sepich, D., Buchanan, F.G., Solnica-Krezel, L., and Dubois, R.N. (2006) Cyclooxygenase-1-derived PGE2 promotes cell motility via the G-protein-coupled EP4 receptor during vertebrate gastrulation. Genes & Development. 20(1):77-86

Challa, A.K., McWhorter, M.L., Wang, C., Seeger, M.A., and Beattie, C.E. (2005) Robo3 isoforms have distinct roles during zebrafish development. Mechanisms of Development. 122(10):1073-1086

Chang, W.N., Lee, G.H., Kao, T.T., Lin, C.Y., Hsiao, T.H., Tsai, J.N., Chen, B.H., Chen, Y.H., Wu, H.R., Tsai, H.J., Fu, T.F. (2014) Knocking down 10-formyltetrahydrofolate dehydrogenase increased oxidative stress and impeded zebrafish embryogenesis by obstructing morphogenetic movement. Biochimica et biophysica acta. General subjects. 1840(7):2340-2350

Chen, J.-N., van Eeden, F.J.M., Warren, K.S., Chin, A., Nüsslein-Volhard, C., Haffter, P., and Fishman, M.C. (1997) Left-right pattern of cardiac BMP4 may drive asymmetry of the heart in zebrafish. Development (Cambridge, England). 124(21):4373-4382

Chen, Q., Takada, R., and Takada, S. (2012) Loss of Porcupine impairs convergent extension during gastrulation in zebrafish. Journal of Cell Science. 125(9):2224-2234

Chen, W., Bian, C., You, X., Li, J., Ye, L., Wen, Z., Lv, Y., Zhang, X., Xu, J., Yang, S., Gu, R., Lin, X., Shi, Q. (2019) Genome Sequencing of the Japanese Eel (Anguilla japonica) for Comparative Genomic Studies on tbx4 and a tbx4 Gene Cluster in Teleost Fishes. Marine drugs. 17(7)

Chen, Y. and Schier, A.F. (2002) Lefty proteins are long-range inhibitors of squint-mediated nodal signaling. Current biology : CB. 12(24):2124-2128

Cheng, P., Andersen, P., Hassel, D., Kaynak, B.L., Limphong, P., Juergensen, L., Kwon, C., and Srivastava, D. (2013) Fibronectin mediates mesendodermal cell fate decisions. Development (Cambridge, England). 140(12):2587-2596

Cheng, T., Xing, Y.Y., Liu, C., Li, Y.F., Huang, Y., Liu, X., Zhang, Y.J., Zhao, G.Q., Dong, Y., Fu, X.X., Tian, Y.M., Shu, L.P., Megason, S.G., Xu, P.F. (2023) Nodal coordinates the anterior-posterior patterning of germ layers and induces head formation in zebrafish explants. Cell Reports. 42:112351112351

Cheng, X.N., Shao, M., Shi, D.L. (2019) Collagen triple helix repeat containing 1a (Cthrc1a) regulates cell adhesion and migration during gastrulation in zebrafish. Experimental cell research. 381(1):112-120

Chng, S.C., Ho, L., Tian, J., and Reversade, B. (2013) ELABELA: A Hormone Essential for Heart Development Signals via the Apelin Receptor. Developmental Cell. 27(6):672-680

Choi, H.M., Beck, V.A., Pierce, N.A. (2014) Next-Generation in Situ Hybridization Chain Reaction: Higher Gain, Lower Cost, Greater Durability. ACS nano. 8(5):4284-94

Chu, L.T., Fong, S.H., Kondrychyn, I., Loh, S.L., Ye, Z., and Korzh, V. (2012) Yolk syncytial layer formation is a failure of cytokinesis mediated by Rock1 function in the early zebrafish embryo. Biology Open. 1(8):747-753

Clément, A., Solnica-Krezel, L., and Gould, K.L. (2011) The Cdc14B phosphatase contributes to ciliogenesis in zebrafish. Development (Cambridge, England). 138(2):291-302

Concha, M.L., Burdine, R.D., Russell, C., Schier, A.F., and Wilson, S.W. (2000) A nodal signaling pathway regulates the laterality of neuroanatomical asymmetries in the zebrafish forebrain. Neuron. 28(2):399-409

Conlon, F.L., Sedgwick, S.G., Weston, K.M., and Smith, J.C. (1996) Inhibition of Xbra transcription activation causes defects in mesodermal patterning and reveals autoregulation of Xbra in dorsal mesoderm. Development (Cambridge, England). 122(8):2427-2435

Cooper, T.K., Murray, K.N., Spagnoli, S., Spitsbergen, J.M. (2015) Primary Intestinal and Vertebral Chordomas in Laboratory Zebrafish (Danio rerio). Veterinary Pathology. 52(2):388-92

Correa, R.G., Tergaonkar, V., Ng, J.K., Dubova, I., Izpisúa Belmonte, J.C., and Verma, I.M. (2004) Characterization of NF-kappa B/I kappa B proteins in zebra fish and their involvement in notochord development. Molecular and cellular biology. 24(12):5257-5268

Coyle, R.C., Latimer, A., and Jessen, J.R. (2008) Membrane-type 1 matrix metalloproteinase regulates cell migration during zebrafish gastrulation: Evidence for an interaction with non-canonical Wnt signaling. Experimental cell research. 314(10):2150-2162

Currie, P.D. and Ingham, P.W. (1996) Induction of a specific muscle cell type by a hedgehog-like protein in zebrafish. Nature. 382(6590):452-455

Daggett, D.F., Boyd, C.A,. Gautier, P., Bryson-Richardson, R.J., Thisse, C., Thisse, B., Amacher, S.L., and Currie, P.D. (2004) Developmentally restricted actin-regulatory molecules control morphogenetic cell movements in the zebrafish gastrula. Current biology : CB. 14(18):632-638

Dancevic, C.M., Gibert, Y., Berger, J., Smith, A.D., Liongue, C., Stupka, N., Ward, A.C., McCulloch, D.R. (2018) The ADAMTS5 Metzincin Regulates Zebrafish Somite Differentiation. International Journal of Molecular Sciences. 19(3)

Darrah, K., Wesalo, J., Lukasak, B., Tsang, M., Chen, J.K., Deiters, A. (2021) Small Molecule Control of Morpholino Antisense Oligonucleotide Function through Staudinger Reduction. Journal of the American Chemical Society. 143(44):18665-18671

Das, B.C., McCartin, K., Liu, T.C., Peterson, R.T., and Evans, T. (2010) A forward chemical screen in zebrafish identifies a retinoic acid derivative with receptor specificity. PLoS One. 5(4):e10004

de Groh, E.D., Swanhart, L.M., Cosentino, C.C., Jackson, R.L., Dai, W., Kitchens, C.A., Day, B.W., Smithgall, T.E., and Hukriede, N.A. (2010) Inhibition of Histone Deacetylase Expands the Renal Progenitor Cell Population. Journal of the American Society of Nephrology : JASN. 21(5):794-802

Dee, C.T., Hirst, C.S., Shih, Y.H., Tripathi, V.B., Patient, R.K., and Scotting, P.J. (2008) Sox3 regulates both neural fate and differentiation in the zebrafish ectoderm. Developmental Biology. 320(1):289-301

Deniziak, M., Thisse, C., Rederstorff, M., Hindelang, C., Thisse, B., and Lescure, A. (2007) Loss of selenoprotein N function causes disruption of muscle architecture in the zebrafish embryo. Experimental cell research. 313(1):156-167

DeVries, C.J.M., DeBoer, J., Joore, J., Strähle, U., VanAchterberg, T.A.E., Huylebröck, D., Verschüren, K., Miyazono, K., VandenEijnden-vanRaaij, A.J.M., and Zivkovic, D. (1996) Active complex formation of type I and type II activin and TGF beta receptors in vivo as studied by overexpression in zebrafish embryos. Mechanisms of Development. 54(2):225-236

Dickmeis, T., Rastegar, S., Aanstad, P., Clark, M., Fischer, N., Korzh, V., and Strähle, U. (2001) Expression of the anti-dorsalizing morphogenetic protein gene in the zebrafish embryo. Development genes and evolution. 211(11):568-572

Dixon Fox, M., and Bruce, A.E. (2009) Short- and long-range functions of Goosecoid in zebrafish axis formation are independent of Chordin, Noggin 1 and Follistatin-like 1b. Development (Cambridge, England). 136(10):1675-1685

Doitsidou, M., Reichman-Fried, M., Stebler, J., Köprunner, M., Dörries, J., Meyer, D., Esguerra, C.V., Leung, T., and Raz, E. (2002) Guidance of primordial germ cell migration by the chemokine SDF-1. Cell. 111(5):647-659

Dong, Z., Peng, J., and Guo, S. (2013) Stable Gene Silencing in Zebrafish with Spatiotemporally Targetable RNA Interference. Genetics. 193(4):1065-1071

Dougan, S.T., Warga, R.M., Kane, D.A., Schier, A.F., and Talbot, W.S. (2003) The role of the zebrafish nodal-related genes squint and cyclops in patterning of mesendoderm. Development (Cambridge, England). 130(9):1837-1851

Driever, W., Solnica-Krezel, L., Schier, A.F., Neuhauss, S.C., Malicki, J., Stemple, D.L., Stainier, D.Y., Zwartkruis, F., Abdelilah, S., Rangini, Z., Belak, J., and Boggs, C. (1996) A genetic screen for mutations affecting embryogenesis in zebrafish. Development (Cambridge, England). 123:37-46

Du, S.J. and Dienhart, M. (2001) Zebrafish tiggy-winkle hedgehog promoter directs notochord and floor plate green fluorescence protein expression in transgenic zebrafish embryos. Developmental Dynamics : an official publication of the American Association of Anatomists. 222(4):655-666

Du, Z., Chen, X., Li, X., He, K., Ji, S., Shi, W., Hao, A. (2016) Protein palmitoylation activate zygotic gene expression during the maternal-to-zygotic transition. Biochemical and Biophysical Research Communications. 475(2):194-201

Dumortier, J.G., David, N.B. (2015) The TORC2 Component, Sin1, Controls Migration of Anterior Mesendoderm during Zebrafish Gastrulation. PLoS One. 10:e0118474

Edeling, M.A., Sanker, S., Shima, T., Umasankar, P.K., Höning, S., Kim, H.Y., Davidson, L.A., Watkins, S.C., Tsang, M., Owen, D.J., and Traub, L.M. (2009) Structural requirements for PACSIN/Syndapin operation during zebrafish embryonic notochord development. PLoS One. 4(12):e8150

Emoto, Y., Wada, H., Okamoto, H., Kudo, A., and Imai, Y. (2005) Retinoic acid-metabolizing enzyme Cyp26a1 is essential for determining territories of hindbrain and spinal cord in zebrafish. Developmental Biology. 278(2):415-427

Eroglu, B., Min, J.N., Zhang, Y., Szurek, E., Moskophidis, D., Eroglu, A., and Mivechi, N.F. (2014) An essential role for heat shock transcription factor binding protein 1 (HSBP1) during early embryonic development. Developmental Biology. 386(2):448-460

Erter, C.E., Solnica-Krezel, L., and Wright, C.V.E. (1998) Zebrafish nodal-related 2 encodes an early mesendodermal inducer signaling from the extraembryonic yolk syncytial layer. Developmental Biology. 204:361-372

Esguerra, C.V., Nelles, L., Vermeire, L., Ibrahimi, A., Crawford, A.D., Derua, R., Janssens, E., Waelkens, E., Carmeliet, P., Collen, D., and Huylebroeck, D. (2007) Ttrap is an essential modulator of Smad3-dependent Nodal signaling during zebrafish gastrulation and left-right axis determination. Development (Cambridge, England). 134(24):4381-4393

Essner, J.J., Amack, J.D., Nyholm, M.K., Harris, E.B., and Yost, H.J. (2005) Kupffer's vesicle is a ciliated organ of asymmetry in the zebrafish embryo that initiates left-right development of the brain, heart and gut. Development (Cambridge, England). 132(6):1247-1260

Essner, J.J., Laing, J.G., Beyer, E.C., Johnson, R.G., and Hackett, P.B. Jr. (1996) Expression of zebrafish connexin43.4 in the notochord and tail bud of wild-type and mutant no tail embryos. Developmental Biology. 177(2):449-462

Etheridge, L., diIorio, P. and Sagerström, C.G. (2002) A zebrafish unc-45 related gene expressed during muscle development. Developmental Dynamics : an official publication of the American Association of Anatomists. 224(4):457-460

Fan, T.P., Lee, J.R., Lin, C.Y., Chen, Y.C., Cutting, A.E., Cameron, R.A., Yu, J.K., Su, Y.H. (2025) Deep homology of a brachyury cis-regulatory syntax and the evolutionary origin of the notochord. Science advances. 11:eadw3307eadw3307

Fang, X., Zhang, B., Thisse, B., Bloom, G.S., Thisse, C. (2015) IQGAP3 Is Essential for Cell Proliferation and Motility During Zebrafish Embryonic Development. Cytoskeleton (Hoboken, N.J.). 72(8):422-33

Farrell, J.A., Wang, Y., Riesenfeld, S.J., Shekhar, K., Regev, A., Schier, A.F. (2018) Single-cell reconstruction of developmental trajectories during zebrafish embryogenesis. Science (New York, N.Y.). 360(6392)

Feldman, B. and Stemple, D.L. (2001) Morpholino phenocopies of sqt, oep, and ntl mutations. Genesis (New York, N.Y. : 2000). 30(3):175-177

Ferg, M., Sanges, R., Gehrig, J., Kiss, J., Bauer, M., Lovas, A., Szabo, M., Yang, L., Straehle, U., Pankratz, M.J., Olasz, F., Stupka, E., and Müller, F. (2007) The TATA-binding protein regulates maternal mRNA degradation and differential zygotic transcription in zebrafish. The EMBO journal. 26(17):3945-3956

Ferrari, L., Pistocchi, A., Libera, L., Boari, N., Mortini, P., Bellipanni, G., Giordano, A., Cotelli, F., Riva, P. (2014) FAS/FASL are dysregulated in chordoma and their loss-of-function impairs zebrafish notochord formation. Oncotarget. 5(14):5712-5724

Finckbeiner, S., Ko, P.J., Carrington, B., Sood, R., Gross, K., Dolnick, B., Sufrin, J., and Liu, P. (2011) Transient Knockdown and Overexpression Reveal a Developmental Role for the Zebrafish enosf1b Gene. Cell & Bioscience. 1:32

Fisher, S., Amacher, S.L., and Halpern, M.E. (1997) Loss of cerebum function ventralizes the zebrafish embryo. Development (Cambridge, England). 124(7):1301-1311

Fodor, E., Zsigmond, A., Horváth, B., Molnár, J., Nagy, I., Tóth, G., Wilson, S.W., and Varga, M. (2013) Full transcriptome analysis of early dorsoventral patterning in zebrafish. PLoS One. 8(7):e70053

Fontenille, L., Rouquier, S., Lutfalla, G., Giorgi, D. (2014) Microtubule-associated protein 9 (Map9/Asap) is required for the early steps of zebrafish development. Cell cycle (Georgetown, Tex.). 13(7):1101-14

Francescatto, L., Rothschild, S.C., Myers, A.L., and Tombes, R.M. (2010) The activation of membrane targeted CaMK-II in the zebrafish Kupffer's vesicle is required for left-right asymmetry. Development (Cambridge, England). 137(16):2753-2762

French, V.M., van de Laar, I.M., Wessels, M.W., Rohe, C., Roos-Hesselink, J.W., Wang, G., Frohn-Mulder, I.M., Severijnen, L.A., de Graaf, B.M., Schot, R., Breedveld, G., Mientjes, E., van Tienhoven, M., Jadot, E., Jiang, Z., Verkerk, A., Swagemakers, S., Venselaar, H., Rahimi, Z., Najmabadi, H., Meijers-Heijboer, H., de Graaff, E., Helbing, W.A., Willemsen, R., Devriendt, K., Belmont, J.W., Oostra, B.A., Amack, J.D., and Bertoli-Avella, A.M. (2012) NPHP4 Variants Are Associated With Pleiotropic Heart Malformations. Circulation research. 110(12):1564-1574

Fu, Q., Martin, B.L., Matus, D.Q., Gao, L. (2016) Imaging multicellular specimens with real-time optimized tiling light-sheet selective plane illumination microscopy. Nature communications. 7:11088

Fuller, K., O'connell, J.T., Gordon, J., Mauti, O., Eggenschwiler, J. (2014) Rab23 regulates Nodal signaling in vertebrate left-right patterning independently of the Hedgehog pathway. Developmental Biology. 391(2):182-195

Gamse, J.T., Thisse, C., Thisse, B., and Halpern, M.E. (2003) The parapineal mediates left-right asymmetry in the zebrafish diencephalon. Development (Cambridge, England). 130:1059-1068

Ganassi, M., Badodi, S., Polacchini, A., Baruffaldi, F., Battini, R., Hughes, S.M., Hinits, Y., Molinari, S. (2014) Distinct functions of alternatively spliced isoforms encoded by zebrafish mef2ca and mef2cb. Biochimica et biophysica acta. Gene regulatory mechanisms. 1839(7):559-70

Garnett, A.T., Han, T.M., Gilchrist, M.J., Smith, J.C., Eisen, M.B., Wardle, F.C., and Amacher, S.L. (2009) Identification of direct T-box target genes in the developing zebrafish mesoderm. Development (Cambridge, England). 136(5):749-760

Ghersi, J.J., Mahony, C.B., Bertrand, J.Y. (2019) bif1, a new BMP signaling inhibitor, regulates embryonic hematopoiesis in the zebrafish. Development (Cambridge, England). 146(6):

Ghosh, S., Moore, S., Bell, R.M., and Dush, M. (2003) Functional analysis of a phosphatidic acid binding domain in human Raf-1 kinase : Mutations in the phosphatidate binding domain lead to tail and trunk abnormalities in developing zebrafish embryos. The Journal of biological chemistry. 278(46):45690-45696

Gibert, Y., Lattanzi, V.J., Zhen, A.W., Vedder, L., Brunet, F., Faasse, S.A., Babitt, J.L., Lin, H.Y., Hammerschmidt, M., and Fraenkel, P.G. (2011) BMP Signaling Modulates Hepcidin Expression in Zebrafish Embryos Independent of Hemojuvelin. PLoS One. 6(1):e14553

Glasgow, E., Karavanov, A.A., and Dawid, I.B. (1997) Neuronal and neuroendocrine expression of lim3, a LIM class homeobox gene, is altered in mutant zebrafish with axial signaling defects. Developmental Biology. 192:405-419

Glickman, N.S., Kimmel, C.B., Jones, M.A., and Adams, R.J. (2003) Shaping the zebrafish notochord. Development (Cambridge, England). 130(5):873-887

Goldstein, A.M. and Fishman, M.C. (1998) Notochord regulates cardiac lineage in zebrafish embryos. Developmental Biology. 201:247-252

Gongal, P.A., and Waskiewicz, A.J. (2008) Zebrafish model of Holoprosencephaly demonstrates a key role for TGIF in regulating retinoic acid metabolism. Human molecular genetics. 17(4):525-538

Gonzalez, V., Grant, M.G., Suzuki, M., Christophers, B., Williams, J.R., Burdine, R.D. (2025) Synergistic and independent roles for Nodal and FGF in zebrafish CPC migration and asymmetric heart morphogenesis. Development (Cambridge, England). :

Goto, H., Kimmey, S.C., Row, R.H., Matus, D.Q., Martin, B.L. (2017) FGF and canonical Wnt signaling cooperate to induce paraxial mesoderm from tailbud neuromesodermal progenitors through regulation of a two-step EMT. Development (Cambridge, England). 144(8):1412-1424

Gourronc, F., Ahmad, N., Nedza, N., Eggleston, T., and Rebagliati, M. (2007) Nodal activity around Kupffer's vesicle depends on the T-box transcription factors notail and spadetail and on notch signaling. Developmental Dynamics : an official publication of the American Association of Anatomists. 236(8):2131-2146

Griffin, K., Patient, R., and Holder, N. (1995) Analysis of FGF function in normal and no tail zebrafish embryos reveals separate mechanisms for formation of the trunk and the tail. Development (Cambridge, England). 121:2983-2994

Griffin, K.J.P. and Kimelman, D. (2002) One-Eyed Pinhead and Spadetail are essential for heart and somite formation. Nature cell biology. 4(10):821-825

Grimes, D.T., Patterson, V.L., Luna-Arvizu, G., Schottenfeld-Roames, J., Irons, Z.H., Burdine, R.D. (2019) Left-right asymmetric heart jogging increases the robustness of dextral heart looping in zebrafish. Developmental Biology. 459(2):79-86

Gritsman, K., Zhang, J., Cheng, S., Heckscher, E., Talbot, W.S., and Schier, A.F. (1999) The EGF-CFC protein one-eyed pinhead is essential for nodal signaling. Cell. 97(1):121-132

Gross-Thebing, S., Truszkowski, L., Tenbrinck, D., Sánchez-Iranzo, H., Camelo, C., Westerich, K.J., Singh, A., Maier, P., Prengel, J., Lange, P., Hüwel, J., Gaede, F., Sasse, R., Vos, B.E., Betz, T., Matis, M., Prevedel, R., Luschnig, S., Diz-Muñoz, A., Burger, M., Raz, E. (2020) Using migrating cells as probes to illuminate features in live embryonic tissues. Science advances. 6(49):

Gu, Q., Yang, X., He, X., Li, Q., and Cui, Z. (2013) Generation and characterization of a transgenic zebrafish expressing the reverse tetracycline transactivator. Journal of genetics and genomics = Yi chuan xue bao. 40(10):523-531

Guarienti, M., Cardozo, S.M., Borgese, L., Lira, G.R., Depero, L.E., Bontempi, E., Presta, M. (2016) COSMOS-rice technology abrogates the biotoxic effects of municipal solid waste incinerator residues. Environmental pollution (Barking, Essex : 1987). 214:713-721

Guner-Ataman, B., González-Rosa, J.M., Shah, H.N., Butty, V.L., Jeffrey, S., Abrial, M., Boyer, L.A., Burns, C.G., Burns, C.E. (2018) Failed Progenitor Specification Underlies the Cardiopharyngeal Phenotypes in a Zebrafish Model of 22q11.2 Deletion Syndrome. Cell Reports. 24:1342-1354.e5

Gupta, S., Zhu, H., Zon, L.I., and Evans, T. (2006) BMP signaling restricts hemato-vascular development from lateral mesoderm during somitogenesis. Development (Cambridge, England). 133(11):2177-2187

Haffter, P., Granato, M., Brand, M., Mullins, M.C., Hammerschmidt, M., Kane, D.A., Odenthal, J., van Eeden, F.J., Jiang, Y.J., Heisenberg, C.P., Kelsh, R.N., Furutani-Seiki, M., Vogelsang, E., Beuchle, D., Schach, U., Fabian, C., and Nüsslein-Volhard, C. (1996) The identification of genes with unique and essential functions in the development of the zebrafish, Danio rerio. Development (Cambridge, England). 123:1-36

Halpern, M.E., Hatta, K., Amacher, S.L., Talbot, W.S., Yan, Y.-L., Thisse, B., Thisse, C., Postlethwait, J.H., and Kimmel, C.B. (1997) Genetic interactions in zebrafish midline development. Developmental Biology. 187(2):154-170

Halpern, M.E., Thisse, C., Ho, R.K., Thisse, B., Riggleman, B., Trevarrow, B., Weinberg, E.S., Postlethwait, J.H., and Kimmel, C.B. (1995) Cell-autonomous shift from axial to paraxial mesodermal development in zebrafish floating head mutants. Development (Cambridge, England). 121:4257-4264

Hammerschmidt, M., Pelegri, F., Mullins, M.C., Kane, D.A., Brand, M., van Eeden, F.J., Furutani-Seiki, M., Granato, M., Haffter, P., Heisenberg, C.P., Jiang, Y.J., Kelsh, R.N., Odenthal, J., Warga, R.M., and Nüsslein-Volhard, C. (1996) Mutations affecting morphogenesis during gastrulation and tail formation in the zebrafish, Danio rerio. Development (Cambridge, England). 123:143-151

Hammerschmidt, M., Serbedzija, G.N., and McMahon, A.P. (1996) Genetic analysis of dorsoventral pattern formation in the zebrafish: requirement of a BMP-like ventralizing activity and its dorsal repressor. Genes & Development. 10(19):2452-2461

Handrigan, G.R. (2003) Concordia discors: duality in the origin of the vertebrate tail. Journal of anatomy. 202(3):255-267

Harrington, M.J., Chalasani, K., and Brewster, R. (2010) Cellular mechanisms of posterior neural tube morphogenesis in the zebrafish. Developmental Dynamics : an official publication of the American Association of Anatomists. 239(3):747-762

Hart, D.O., Raha, T., Lawson, N.D., and Green, M.R. (2007) Initiation of zebrafish haematopoiesis by the TATA-box-binding protein-related factor Trf3. Nature. 450(7172):1082-1085

Harvey, S.A., Tümpel, S., Dubrulle, J., Schier, A.F., and Smith, J.C. (2010) no tail integrates two modes of mesoderm induction. Development (Cambridge, England). 137(7):1127-1135

Hashiguchi, M., and Mullins, M.C. (2013) Anteroposterior and dorsoventral patterning are coordinated by an identical patterning clock. Development (Cambridge, England). 140(9):1970-1980

Hashimoto, H., Rebagliati, M., Ahmad, N., Muraoka, O., Kurokawa, T., Hibi, M., and Suzuki, T. (2004) The Cerberus/Dan-family protein Charon is a negative regulator of Nodal signaling during left-right patterning in zebrafish. Development (Cambridge, England). 131(8):1741-1753

Hatta, K. and Takahashi, Y. (1996) Secondary axis induction by heterospecific organizers in zebrafish. Developmental Dynamics : an official publication of the American Association of Anatomists. 205:183-195

Hawkins, T.A., Cavodeassi, F., Erdelyi, F., Szabo, G., and Lele, Z. (2008) The small molecule Mek1/2 inhibitor U0126 disrupts the chordamesoderm to notochord transition in zebrafish. BMC Developmental Biology. 8(1):42

He, Y., Xu, X., Zhao, S., Ma, S., Sun, L., Liu, Z., and Luo, C. (2014) Maternal control of axial-paraxial mesoderm patterning via direct transcriptional repression in zebrafish. Developmental Biology. 386(1):96-110

Heisenberg, C.P., Brand, M., Jiang, Y.J., Warga, R.M., Beuchle, D., van Eeden, F.J., Furutani-Seiki, M., Granato, M., Haffter, P., Hammerschmidt, M., Kane, D.A., Kelsh, R.N., Mullins, M.C., Odenthal, J., and Nüsslein-Volhard, C. (1996) Genes involved in forebrain development in the zebrafish, Danio rerio. Development (Cambridge, England). 123:191-203

Henry, C.A., Crawford, B.D., Yan, Y.-L., Postlethwait, J., Cooper, M.S., and Hille, M.B. (2001) Roles for zebrafish focal adhesion kinase in notochord and somite morphogenesis. Developmental Biology. 240(2):474-487

Hinits, Y., Pan, L., Walker, C., Dowd, J., Moens, C.B., and Hughes, S.M. (2012) Zebrafish Mef2ca and Mef2cb are essential for both first and second heart field cardiomyocyte differentiation. Developmental Biology. 369(2):199-210

Hochgreb-Hägele, T., Yin, C., Koo, D.E., Bronner, M.E., and Stainier, D.Y. (2013) Laminin beta1a controls distinct steps during the establishment of digestive organ laterality. Development (Cambridge, England). 140(13):2734-2745

Holloway, B.A., Gomez de la Torre Canny, S., Ye, Y., Slusarski, D.C., Freisinger, C.M., Dosch, R., Chou, M.M., Wagner, D.S., and Mullins, M.C. (2009) A novel role for MAPKAPK2 in morphogenesis during zebrafish development. PLoS Genetics. 5(3):e1000413

Hong, S.K., and Dawid, I.B. (2009) FGF-dependent left-right asymmetry patterning in zebrafish is mediated by Ier2 and Fibp1. Proceedings of the National Academy of Sciences of the United States of America. 106(7):2230-2235

Hong, S.K., Tsang, M., and Dawid, I.B. (2008) The Mych Gene Is Required for Neural Crest Survival during Zebrafish Development. PLoS One. 3(4):e2029

Hoshijima, K., Jurynec, M.J., Grunwald, D.J. (2016) Precise Editing of the Zebrafish Genome Made Simple and Efficient. Developmental Cell. 36:654-67

Hozumi, S., Aoki, S., Kikuchi, Y. (2017) Nuclear movement regulated by non-Smad Nodal signaling via JNK is associated with Smad signaling during zebrafish endoderm specification. Development (Cambridge, England). 144(21):4015-4025

Hsu, J., Huang, H.T., Lee, C.T., Choudhuri, A., Wilson, N.K., Abraham, B.J., Moignard, V., Kucinski, I., Yu, S., Hyde, R.K., Tober, J., Cai, X., Li, Y., Guo, Y., Yang, S., Superdock, M., Trompouki, E., Calero-Nieto, F.J., Ghamari, A., Jiang, J., Gao, P., Gao, L., Nguyen, V., Robertson, A.L., Durand, E.M., Kathrein, K.L., Aifantis, I., Gerber, S.A., Tong, W., Tan, K., Cantor, A.B., Zhou, Y., Liu, P.P., Young, R.A., Göttgens, B., Speck, N.A., Zon, L.I. (2020) CHD7 and Runx1 interaction provides a braking mechanism for hematopoietic differentiation. Proceedings of the National Academy of Sciences of the United States of America. 117(38):23626-23635

Hu, H., Xin, N., Liu, J., Liu, M., Wang, Z., Wang, W., Zhang, Q., Qi, J. (2016) Characterization of F-spondin in Japanese flounder (Paralichthys olivaceus) and its role in the nervous system development of teleosts. Gene. 575(2 Pt 3):623-31

Hu, S., Wu, Z., Yan, Y., and Li, Y. (2011) Sox31 is involved in central nervous system anteroposterior regionalization through regulating the organizer activity in zebrafish. Acta biochimica et biophysica Sinica. 43(5):387-399

Huang, C.J., Wilson, V., Pennings, S., MacRae, C.A., and Mullins, J. (2013) Sequential effects of spadetail, one-eyed pinhead and no tail on midline convergence of nephric primordia during zebrafish embryogenesis. Developmental Biology. 384(2):290-300

Huang, H., Lu, F.I., Jia, S., Meng, S., Cao, Y., Wang, Y., Ma, W., Yin, K., Wen, Z., Peng, J., Thisse, C., Thisse, B., and Meng, A. (2007) Amotl2 is essential for cell movements in zebrafish embryo and regulates c-Src translocation. Development (Cambridge, England). 134(5):979-988

Huang, S., Ma, J., Liu, X., Zhang, Y., and Luo, L. (2011) Geminin is required for left-right patterning through regulating Kupffer's vesicle formation and ciliogenesis in zebrafish. Biochemical and Biophysical Research Communications. 410(2):164-9

Huang, Y., Wang, W.F., Huang, C.X., Li, X.H., Liu, H., Wang, H.L. (2022) miR-731 modulates the zebrafish heart morphogenesis via targeting Calcineurin/Nfatc3a pathway. Biochimica et biophysica acta. General subjects. 1866(6):130133

Hung, I.C., Chen, T.M., Lin, J.P., Tai, Y.L., Shen, T.L., Lee, S.J. (2020) Wnt5b integrates Fak1a to mediate gastrulation cell movements via Rac1 and Cdc42. Open Biology. 10:190273

Ikeda, T., Inamori, K., Kawanishi, T., Takeda, H. (2022) Reemployment of Kupffer's vesicle cells into axial and paraxial mesoderm via transdifferentiation. Development, growth & differentiation. 64(3):163-177

Iwanami, N., Takeshita, K., Lawir, D.F., Suetake, I., Tajima, S., Sikora, K., Trancoso, I., ÓMeara, C., Siamishi, I., Takahama, Y., Furutani-Seiki, M., Kondoh, H., Yonezawa, Y., Schorpp, M., Boehm, T. (2020) Epigenetic Protection of Vertebrate Lymphoid Progenitor Cells by Dnmt1. iScience. 23:101260

Jahangiri, L., Nelson, A.C., Wardle, F.C. (2012) A cis-regulatory module upstream of deltaC regulated by Ntla and Tbx16 drives expression in the tailbud, presomitic mesoderm and somites. Developmental Biology. 371:110-120

Jia, S., Ren, Z., Li, X., Zheng, Y., and Meng, A. (2008) smad2 and smad3 Are Required for Mesendoderm Induction by Transforming Growth Factor-β/Nodal Signals in Zebrafish. The Journal of biological chemistry. 283(4):2418-2426

Jing, X.H., Zhou, S.M., Wang, W.Q., and Chen, Y. (2006) Mechanisms underlying long- and short-range nodal signaling in Zebrafish. Mechanisms of Development. 123(5):388-394

Joore, J., Van de Water, S., Betist, M., Van den Eijnden-van Raaij A., and Zivkovic, D. (1998) Protein kinase A is involved in the induction of early mesodermal marker genes by activin. Mechanisms of Development. 79:5-15

Jopling, C., van Geemen, D., and den Hertog, J. (2007) Shp2 Knockdown and Noonan/LEOPARD Mutant Shp2-Induced Gastrulation Defects. PLoS Genetics. 3(12):e225

Junker, J.P., Noël, E.S., Guryev, V., Peterson, K.A., Shah, G., Huisken, J., McMahon, A.P., Berezikov, E., Bakkers, J., van Oudenaarden, A. (2014) Genome-wide RNA Tomography in the Zebrafish Embryo. Cell. 159:662-75

Kai, M., Kondo, M. (2024) Suppression of Pcdh8/paraxial protocadherin is required for efficient neighbor exchange in morphogenetic cell movement during zebrafish notochord formation. Scientific Reports. 14:2569725697

Kamei, H., Yoneyama, Y., Hakuno, F., Sawada, R., Shimizu, T., Duan, C., Takahashi, S.I. (2018) Catch-up growth in zebrafish embryo requires neural crest cells sustained by Irs1-signaling. Endocrinology. 159(4):1547-1560

Kapp, L.D., Abrams, E.W., Marlow, F.L., and Mullins, M.C. (2013) The integrator complex subunit 6 (ints6) confines the dorsal organizer in vertebrate embryogenesis. PLoS Genetics. 9(10):e1003822

Kaufman, C.D., Martinez-Rodriguez, G., and Hackett, P.B. (2000) Ectopic expression of c-ski disrupts gastrulation and neural patterning in zebrafish. Mechanisms of Development. 95(1-2):147-162

Kawahara, A., Che, Y.S., Hanaoka, R., Takeda, H., and Dawid, I.B. (2005) Zebrafish GADD45{beta} genes are involved in somite segmentation. Proceedings of the National Academy of Sciences of the United States of America. 102(2):361-366

Kawakami, H., Bailey, A., Gavin, E., Gearhart, M.D., Isabella, A.J., Kawakami, Y. (2025) Zebrafish sall1a and sall4 contribute to body elongation. Developmental Biology. :

Kawamura, A., Koshida, S., Hijikata, H., Sakaguchi, T., Kondoh, H., and Takada, S. (2005) Zebrafish Hairy/Enhancer of split protein links FGF signaling to cyclic gene expression in the periodic segmentation of somites. Genes & Development. 19(10):1156-1161

Kelly, G.M., Greenstein, P., Erezyilmaz, D.F., and Moon, R.T. (1995) Zebrafish wnt8 and wnt8b share a common activity but are involved in distinct developmental pathways. Development (Cambridge, England). 121:1787-1799

Kenyon, E.J., Campos, I., Bull, J.C., Williams, P.H., Stemple, D.L., Clark, M.D. (2015) Zebrafish Rab5 Proteins and a role for Rab5ab in nodal signalling. Developmental Biology. 397(2):212-24

Khan, A., Nakamoto, A., Okamoto, S., Tai, M., Nakayama, Y., Kobayashi, K., Kawamura, A., Takeda, H., and Yamasu, K. (2012) Pou2, a class V POU-type transcription factor in zebrafish, regulates dorsoventral patterning and convergent extension movement at different blastula stages. Mechanisms of Development. 129(9-12):219-235

Khatri, D., Zizioli, D., Tiso, N., Facchinello, N., Vezzoli, S., Gianoncelli, A., Memo, M., Monti, E., Borsani, G., Finazzi, D. (2016) Down-regulation of coasy, the gene associated with NBIA-VI, reduces Bmp signaling, perturbs dorso-ventral patterning and alters neuronal development in zebrafish. Scientific Reports. 6:37660

Khuansuwan, S., Gamse, J.T. (2014) Identification of differentially expressed genes during development of the zebrafish pineal complex using RNA sequencing. Developmental Biology. 395(1):144-53

Kilian, B., Mansukoski, H., Barbosa, F.C., Ulrich, F., Tada, M., and Heisenberg, C.P. (2003) The role of Ppt/Wnt5 in regulating cell shape and movement during zebrafish gastrulation. Mechanisms of Development. 120(4):467-476

Kimelman, D. (2016) A novel cold-sensitive mutant of ntla reveals temporal roles of Brachyury in zebrafish. Developmental Dynamics : an official publication of the American Association of Anatomists. 245(8):874-80

Kispert, A. and Herrmann, B.G. (1993) The Brachyury gene encodes a novel DNA binding protein. The EMBO journal. 12:3211-3220

Kjaer-Sorensen, K., Engholm, D.H., Kamei, H., Morch, M.G., Kristensen, A.O., Zhou, J., Conover, C.A., Duan, C., and Oxvig, C. (2013) Pregnancy-associated plasma protein-A (PAPP-A) modulates early developmental rate in zebrafish independent of its proteolytic activity. The Journal of biological chemistry. 288(14):9982-92

Knowlton, M.N. and Kelly, G.M. (2004) Zebrafish Mir Antagonizes Frizzled 7-Induced Gastrulation Defects. Zebrafish. 1(2):133-144

Kobayashi, M., Toyama, R., Takeda, H., Dawid, I.B., and Kawakami, K. (1998) Overexpression of the forebrain-specific homeobox gene six3 induces rostral forebrain enlargement in zebrafish. Development (Cambridge, England). 125:2973-2982

Kok, F.O., Taibi, A., Wanner, S.J., Xie, X., Moravec, C.E., Love, C.E., Prince, V.E., Mumm, J.S., and Sirotkin, H.I. (2012) Zebrafish rest regulates developmental gene expression but not neurogenesis. Development (Cambridge, England). 139(20):3838-3848

Koparir, A., Lekszas, C., Keseroglu, K., Rose, T., Rappl, L., Rad, A., Maroofian, R., Narendran, N., Hasanzadeh, A., Karimiani, E.G., Boschann, F., Kornak, U., Klopocki, E., Özbudak, E.M., Vona, B., Haaf, T., Liedtke, D. (2024) Zebrafish as a model to investigate a biallelic gain-of-function variant in MSGN1, associated with a novel skeletal dysplasia syndrome. Human genomics. 18:2323

Koshida, S., Shinya, M., Mizuno, T., Kuroiwa, A., and Takeda, H. (1998) Initial anteroposterior pattern of the zebrafish central nervous system is determined by differential competence of the epiblast. Development (Cambridge, England). 125:1957-1966

Krauss, S., Concordet, J.P., and Ingham, P.W. (1993) A functionally conserved homolog of the Drosophila segment polarity gene hh is expressed in tissues with polarizing activity in zebrafish embryos. Cell. 75(7):1431-1444

Krens, S.F., Corredor-Adamez, M., He, S., Snaar-Jagalska, B.E., and Spaink, H.P. (2008) ERK1 and ERK2 MAPK are key regulators of distinct gene sets in zebrafish embryogenesis. BMC Genomics. 9:196

Krieg, M., Arboleda-Estudillo, Y., Puech, P.H., Käfer, J., Graner, F., Müller, D.J., and Heisenberg, C.P. (2008) Tensile forces govern germ-layer organization in zebrafish. Nature cell biology. 10(4):429-436

Kudoh, T. and Dawid, I.B. (2001) Role of the iroquois3 homeobox gene in organizer formation. Proceedings of the National Academy of Sciences of the United States of America. 98(14):7852-7857

Kudoh, T., Wilson, S.W., and Dawid, I.B. (2002) Distinct roles for Fgf, Wnt and retinoic acid in posteriorizing the neural ectoderm. Development (Cambridge, England). 129(18):4335-4346

Kundu, J., Ghosh, A., Ghosh, U., Das, A., Nagar, D., Pattanayak, S., Ghose, A., Sinha, S. (2022) Synthesis of Phosphorodiamidate Morpholino Oligonucleotides Using Trityl and Fmoc Chemistry in an Automated Oligo Synthesizer. The Journal of organic chemistry. 87(15):9466-9478

Kuo, C.L., Lam, C.M., Hewitt, J.E., and Scotting, P.J. (2013) Formation of the Embryonic Organizer Is Restricted by the Competitive Influences of Fgf Signaling and the SoxB1 Transcription Factors. PLoS One. 8(2):e57698

Kushawah, G., Hernandez-Huertas, L., Abugattas-Nuñez Del Prado, J., Martinez-Morales, J.R., DeVore, M.L., Hassan, H., Moreno-Sanchez, I., Tomas-Gallardo, L., Diaz-Moscoso, A., Monges, D.E., Guelfo, J.R., Theune, W.C., Brannan, E.O., Wang, W., Corbin, T.J., Moran, A.M., Sánchez Alvarado, A., Málaga-Trillo, E., Takacs, C.M., Bazzini, A.A., Moreno-Mateos, M.A. (2020) CRISPR-Cas13d Induces Efficient mRNA Knockdown in Animal Embryos. Developmental Cell. 54(6):805-817.e7

Labalette, C., Bouchoucha, Y.X., Wassef, M.A., Gongal, P.A., Le Men, J., Becker, T., Gilardi-Hebenstreit, P., and Charnay, P. (2011) Hindbrain patterning requires fine-tuning of early krox20 transcription by Sprouty 4. Development (Cambridge, England). 138(2):317-326

Labudina, A.A., Meier, M., Gimenez, G., Tatarakis, D., Ketharnathan, S., Mackie, B., Schilling, T.F., Antony, J., Horsfield, J.A. (2024) Cohesin composition and dosage independently affect early development in zebrafish. Development (Cambridge, England). 151(15):

Lai, S.L., Yao, W.L., Tsao, K.C., Houben, A.J., Albers, H.M., Ovaa, H., Moolenaar, W.H., and Lee, S.J. (2012) Autotaxin/Lpar3 signaling regulates Kupffer's vesicle formation and left-right asymmetry in zebrafish. Development (Cambridge, England). 139(23):4439-4448

Lam, S.H., Lee, S.G., Lin, C.Y., Thomsen, J.S., Fu, P.Y., Murthy, K.R., Li, H., Govindarajan, K.R., Nick, L.C., Bourque, G., Gong, Z., Lufkin, T., Liu, E.T., and Mathavan, S. (2011) Molecular conservation of estrogen-response associated with cell cycle regulation, hormonal carcinogenesis and cancer in zebrafish and human cancer cell lines. BMC Medical Genomics. 4(1):41

Langdon, Y.G., Fuentes, R., Zhang, H., Abrams, E.W., Marlow, F.L., Mullins, M.C. (2016) Split top: A maternal cathepsin B that regulates dorsoventral patterning and morphogenesis. Development (Cambridge, England). 143(6):1016-28

Latimer, A.J., Dong, X., Markov, Y., and Appel, B. (2002) Delta-Notch signaling induces hypochord development in zebrafish. Development (Cambridge, England). 129(11):2555-2563

Lauderdale, J.D., Pasquali, S.K., Fazel, R., van Eeden, F.J., Schauerte, H.E., Haffter, P., and Kuwada, J.Y. (1998) Regulation of netrin-1a expression by hedgehog proteins. Molecular and cellular neurosciences. 11:194-205

Lee, G.H., Chang, C.L., Chiu, W.T., Hsiao, T.H., Chen, P.Y., Wang, K.C., Kuo, C.H., Chen, B.H., Shi, G.Y., Wu, H.L., Fu, T.F. (2019) A thrombomodulin-like gene is crucial to the collective migration of epibolic blastomeres during germ layer formation and organogenesis in zebrafish. Journal of Biomedical Science. 26:60

Lee, M.T., Bonneau, A.R., Takacs, C.M., Bazzini, A.A., Divito, K.R., Fleming, E.S., and Giraldez, A.J. (2013) Nanog, Pou5f1 and SoxB1 activate zygotic gene expression during the maternal-to-zygotic transition. Nature. 503(7476):360-4

Lee, Y.H., Kawakami, K., HuangFu, W.C., Liu, I.H. (2020) Chondroitin sulfate proteoglycan 4 regulates zebrafish body axis organization via Wnt/planar cell polarity pathway. PLoS One. 15:e0230943

Leichsenring, M., Maes, J., Mössner, R., Driever, W., and Onichtchouk, D. (2013) Pou5f1 transcription factor controls zygotic gene activation in vertebrates. Science (New York, N.Y.). 341(6149):1005-1009

Lekven, A.C., Thorpe, C.J., Waxman, J.S., and Moon, R.T. (2001) Zebrafish wnt8 encodes two wnt8 proteins on a bicistronic transcript and is required for mesoderm and neurectoderm patterning. Developmental Cell. 1(1):103-114

Lenhart, K.F., Holtzman, N.G., Williams, J.R., and Burdine, R.D. (2013) Integration of Nodal and BMP Signals in the Heart Requires FoxH1 to Create Left-Right Differences in Cell Migration Rates That Direct Cardiac Asymmetry. PLoS Genetics. 9(1):e1003109

Leung, T., Humbert, J.E., Stauffer, A.M., Giger, K.E., Chen, H., Tsai, H.J., Wang, C., Mirshahi, T., and Robishaw, J.D. (2008) The orphan G protein-coupled receptor 161 is required for left-right patterning. Developmental Biology. 323(1):31-40

Lewis, K.E., and Eisen, J.S. (2004) Paraxial mesoderm specifies zebrafish primary motoneuron subtype identity. Development (Cambridge, England). 131(4):891-902

Li, D., Sun, H., Deng, W., Tao, D., Liu, Y., and Ma, Y. (2011) Zili Antagonizes Bmp Signaling to Regulate Dorsal-Ventral Patterning during Zebrafish Early Embryogenesis. Zoological science. 28(6):397-402

Li, J.T., Cheng, X.N., Zhang, C., Shi, D.L., Shao, M. (2021) The Adaptor Protein Lurap1 Is Required for Cell Cohesion during Epiboly Movement in Zebrafish. Biology. 10(12):

Li, L., Shi, H., Zhang, M., Guo, X., Tong, F., Zhang, W., Zhou, J., Wang, H., Yang, S. (2016) Upregulation of metastasis-associated PRL-3 initiates chordoma in zebrafish. International Journal of Oncology. 48(4):1541-52

Li, S.Z., Liu, W., Li, Z., Li, W.H., Wang, Y., Zhou, L., Gui, J.F. (2017) greb1 regulates convergent extension movement and pituitary development in zebrafish. Gene. 627:176-187

Li, W., Yuan, M., Wu, Y., Liu, X. (2020) Bixafen exposure induces developmental toxicity in zebrafish (Danio rerio) embryos. Environmental research. 189:109923

Li, X., Zhang, Y., Li, X., Feng, D., Zhang, S., Zhao, X., Chen, D., Zhang, Z., Feng, X. (2017) Comparative analysis of biological effect of corannulene and graphene on developmental and sleep/wake profile of zebrafish larvae. Acta biomaterialia. 55:271-282

Li, Y.L., Cheng, X.N., Lu, T., Shao, M., Shi, D.L. (2021) Syne2b/Nesprin-2 Is Required for Actin Organization and Epithelial Integrity During Epiboly Movement in Zebrafish. Frontiers in cell and developmental biology. 9:671887

Li, Z., Korzh, V., and Gong, Z. (2007) Localized rbp4 expression in the yolk syncytial layer plays a role in yolk cell extension and early liver development. BMC Developmental Biology. 7(1):117

Li-Villarreal, N., Forbes, M.M., Loza, A.J., Chen, J., Ma, T., Helde, K., Moens, C.B., Shin, J., Sawada, A., Hindes, A.E., Dubrulle, J., Schier, A.F., Longmore, G.D., Marlow, F.L., Solnica-Krezel, L. (2015) Dachsous1b cadherin regulates actin and microtubule cytoskeleton during early zebrafish embryogenesis. Development (Cambridge, England). 142(15):2704-18

Liang, J.O., Etheridge, A., Hantsoo, L., Rubinstein, A.L., Nowak, S.J., Izpisúa Belmonte, J.C., and Halpern, M.E. (2000) Asymmetric Nodal signaling in the zebrafish diencephalon positions the pineal organ. Development (Cambridge, England). 127(23):5101-5112

Liedtke, D., Orth, M., Meissler, M., Geuer, S., Knaup, S., Köblitz, I., Klopocki, E. (2019) ECM alterations in Fndc3a (Fibronectin Domain Containing Protein 3A) deficient zebrafish cause temporal fin development and regeneration defects. Scientific Reports. 9:13383

Lin, C.Y., Tsai, M.Y., Liu, Y.H., Lu, Y.F., Chen, Y.C., Lai, Y.R., Liao, H.C., Lien, H.W., Yang, C.H., Huang, C.J., Hwang, S.L. (2017) Klf8 regulates left-right asymmetric patterning through modulation of Kupffer's vesicle morphogenesis and spaw expression. Journal of Biomedical Science. 24:45

Lin, X., and Xu, X. (2009) Distinct functions of Wnt/{beta}-catenin signaling in KV development and cardiac asymmetry. Development (Cambridge, England). 136(2):207-217

Lin, X., Zhou, Q., Zhao, C., Lin, G., Xu, J., Wen, Z. (2019) An Ectoderm-Derived Myeloid-like Cell Population Functions as Antigen Transporters for Langerhans Cells in Zebrafish Epidermis. Developmental Cell. 49(4):605-617.e5

Link, V., Carvalho, L., Castanon, I., Stockinger, P., Shevchenko, A., and Heisenberg, C.P. (2006) Identification of regulators of germ layer morphogenesis using proteomics in zebrafish. Journal of Cell Science. 119(10):2073-2083

Liu, J., Hemphill, J., Samanta, S., Tsang, M., Deiters, A. (2017) Genetic Code Expansion in Zebrafish Embryos and Its Application to Optical Control of Cell Signaling. Journal of the American Chemical Society. 139(27):9100-9103

Liu, J.X., Xu, Q.H., Li, S., Yu, X., Liu, W., Ouyang, G., Zhang, T., Chen, L.L. (2017) Transcriptional factors Eaf1/2 inhibit endoderm and mesoderm formation via suppressing TGF-β signaling. Biochimica et biophysica acta. 1860(10):1103-1116

Liu, S., Li, Z., and Gui, J.F. (2009) Fish-specific duplicated dmrt2b contributes to a divergent function through Hedgehog pathway and maintains left-right asymmetry establishment function. PLoS One. 4(9):e7261

Liu, X., Huang, S., Ma, J., Li, C., Zhang, Y., and Luo, L. (2009) NF-kappaB and Snail1a coordinate the cell cycle with gastrulation. The Journal of cell biology. 184(6):805-815

Liu, X., Ning, G., Meng, A., and Wang, Q. (2012) MicroRNA-206 regulates cell movements during zebrafish gastrulation by targeting prickle1a and regulating JNK2 phosphorylation. Molecular and cellular biology. 32(14):2934-2942

Liu, X., Zhang, Q., Li, S., Mi, P., Chen, D., Zhao, X., Feng, X. (2018) Developmental toxicity and neurotoxicity of synthetic organic insecticides in zebrafish (Danio rerio): A comparative study of deltamethrin, acephate, and thiamethoxam. Chemosphere. 199:16-25

Liu, Y., Lin, Z., Sun, H. (2020) Cystic fibrosis transmembrane conductance regulator (CFTR) regulates embryonic organizer formation during zebrafish early embryogenesis. The International journal of developmental biology. 64:409-413

Liu, Y.W., Gao, W., Teh, H.L., Tan, J.H., and Chan, W.K. (2003) Prox1 is a novel coregulator of Ff1b and is involved in the embryonic development of the zebra fish interrenal primordium. Molecular and cellular biology. 23(20):7243-7255

Liu, Z., Ning, G., Xu, R., Cao, Y., Meng, A., Wang, Q. (2016) Fscn1 is required for the trafficking of TGF-β family type I receptors during endoderm formation. Nature communications. 7:12603

Londin, E.R., Mentzer, L., and Sirotkin, H.I. (2007) Churchill regulates cell movement and mesoderm specification by repressing Nodal signaling. BMC Developmental Biology. 7(1):120

Long, S., Ahmad, N., and Rebagliati, M. (2003) The zebrafish nodal-related gene southpaw is required for visceral and diencephalic left-right asymmetry. Development (Cambridge, England). 130(11):2303-2316

Lou, Q., He, J., Hu, L., and Yin, Z. (2012) Role of lbx2 in the noncanonical Wnt signaling pathway for convergence and extension movements and hypaxial myogenesis in zebrafish. Biochimica et biophysica acta. Molecular cell research. 1823(5):1024-1032

Loucks, E.J., and Ahlgren, S.C. (2009) Deciphering the role of Shh signaling in axial defects produced by ethanol exposure. Birth defects research. Part A, Clinical and molecular teratology. 85(6):556-567

Lunde, K., Belting, H.G., and Driever, W. (2004) Zebrafish pou5f1/pou2, homolog of mammalian Oct4, functions in the endoderm specification cascade. Current biology : CB. 14(1):48-55

Lyman Gingerich, J., Westfall, T.A., Slusarski, D.C., and Pelegri, F. (2005) hecate, a zebrafish maternal effect gene, affects dorsal organizer induction and intracellular calcium transient frequency. Developmental Biology. 286(2):427-439

Machingo, Q.J., Fritz, A., and Shur, B.D. (2006) A beta1,4-galactosyltransferase is required for convergent extension movements in zebrafish. Developmental Biology. 297(2):471-482

Maegawa, S., Varga, M., and Weinberg, E.S. (2006) FGF signaling is required for {beta}-catenin-mediated induction of the zebrafish organizer. Development (Cambridge, England). 133(16):3265-3276

Manchenkov, T., Pasillas, M.P., Haddad, G.G., Imam, F.B. (2015) Novel Genes Critical for Hypoxic Preconditioning in Zebrafish Are Regulators of Insulin and Glucose Metabolism. G3 (Bethesda). 5(6):1107-16

Maragh, S., Miller, R.A., Bessling, S.L., Wang, G., Hook, P.W., McCallion, A.S. (2014) Rbm24a and Rbm24b Are Required for Normal Somitogenesis. PLoS One. 9:e105460

Marlow, F., Topczewski, J., Sepich, D., and Solnica-Krezel, L. (2002) Zebrafish rho kinase 2 acts downstream of wnt11 to mediate cell polarity and effective convergence and extension movements. Current biology : CB. 12(11):876-884

Martin, B.L., and Kimelman, D. (2012) Canonical Wnt Signaling Dynamically Controls Multiple Stem Cell Fate Decisions during Vertebrate Body Formation. Developmental Cell. 22(1):223-232

Martin, C.C., Laforest, L., Akimenko, M.-A., and Ekker, M. (1999) A role for DNA methylation in gastrulation and somite patterning. Developmental Biology. 206:189-205

Mathieu, J., Griffin, K., Herbomel, P., Dickmeis, T., Strähle, U., Kimelman, D., Rosa, F.M., and Peyriéras, N. (2004) Nodal and Fgf pathways interact through a positive regulatory loop and synergize to maintain mesodermal cell populations. Development (Cambridge, England). 131(3):629-641

Matsui, T., Raya, A., Kawakami, Y., Callol-Massot, C., Capdevila, J., Rodriguez-Esteban, C., Izpisúa Belmonte, J.C. (2005) Noncanonical Wnt signaling regulates midline convergence of organ primordia during zebrafish development. Genes & Development. 19(1):164-175

Matsui, T., Thitamadee, S., Murata, T., Kakinuma, H., Nabetani, T., Hirabayashi, Y., Hirate, Y., Okamoto, H., and Bessho, Y. (2011) Canopy1, a positive feedback regulator of FGF signaling, controls progenitor cell clustering during Kupffer's vesicle organogenesis. Proceedings of the National Academy of Sciences of the United States of America. 108(24):9881-6

Maves, L., and Kimmel, C.B. (2005) Dynamic and sequential patterning of the zebrafish posterior hindbrain by retinoic acid. Developmental Biology. 285(2):593-605

McCarthy, N., Sidik, A., Bertrand, J.Y., Eberhart, J.K. (2016) An Fgf-Shh signaling hierarchy regulates early specification of the zebrafish skull. Developmental Biology. 415(2):261-77

McGhee, J.D. (2000) Homologous tails? Or tales of homology?. BioEssays : news and reviews in molecular, cellular and developmental biology. 22(9):781-785

McReynolds, L.J., Gupta, S., Figueroa, M.E., Mullins, M.C., and Evans, T. (2007) Smad1 and Smad5 differentially regulate embryonic hematopoiesis. Blood. 110(12):3881-3890

Melby, A.E., Kimelman, D., and Kimmel, C.B. (1997) Spatial regulation of floating head expression in the developing notochord. Developmental Dynamics : an official publication of the American Association of Anatomists. 209(2):156-165

Mendonsa, E.S. and Riley, B.B. (1999) Genetic analysis of tissue interactions required for otic placode induction in the zebrafish. Developmental Biology. 206:100-112

Miller-Bertoglio, V.E., Fisher, S., Sanchez, A., Mullins, M.C., and Halpern, M. (1997) Differential regulation of chordin expression domains in mutant zebrafish. Developmental Biology. 192:537-550

Mishima, Y., Tomari, Y. (2016) Codon Usage and 3' UTR Length Determine Maternal mRNA Stability in Zebrafish. Molecular Cell. 61:874-885

Miyares, R.L., Stein, C., Renisch, B., Anderson, J.L., Hammerschmidt, M., and Farber, S.A. (2013) Long-Chain Acyl-CoA Synthetase 4A Regulates Smad Activity and Dorsoventral Patterning in the Zebrafish Embryo. Developmental Cell. 27(6):635-647

Mizoguchi, T., Izawa, T., Kuroiwa, A., and Kikuchi, Y. (2006) Fgf signaling negatively regulates Nodal-dependent endoderm induction in zebrafish. Developmental Biology. 300(2):612-622

Mizuno, T., Yamaha, E., Kuroiwa, A., and Takeda, H. (1999) Removal of vegetal yolk causes dorsal deficencies and impairs dorsal-inducing ability of the yolk cell in zebrafish. Mechanisms of Development. 81(1-2):51-63

Montague, T.G., Schier, A.F. (2017) Vg1-Nodal heterodimers are the endogenous inducers of mesendoderm. eLIFE. 6

Montero, J.-A., Killan, B., Chan, J., Bayliss, P.E., and Heisenberg, C.-P. (2003) Phosphoinositide 3-kinase is required for process outgrowth and cell polarization of gastrulating mesendodermal cells. Current biology : CB. 13(15):1279-1289

Moreno, T.A., Jappelli, R., Izpisúa Belmonte, J.C., and Kintner, C. (2008) Retinoic acid regulation of the Mesp-Ripply feedback loop during vertebrate segmental patterning. Developmental Biology. 315(2):317-330

Moreno-Mateos, M.A., Fernandez, J.P., Rouet, R., Vejnar, C.E., Lane, M.A., Mis, E., Khokha, M.K., Doudna, J.A., Giraldez, A.J. (2017) CRISPR-Cpf1 mediates efficient homology-directed repair and temperature-controlled genome editing. Nature communications. 8:2024

Moreno-Sánchez, I., Hernández-Huertas, L., Nahón-Cano, D., Martínez-García, P.M., Treichel, A.J., Gómez-Marin, C., Tomás-Gallardo, L., da Silva Pescador, G., Kushawah, G., Egidy, R., Perera, A., Díaz-Moscoso, A., Cano-Ruiz, A., Walker, J.A., Muñoz, M.J., Holden, K., Galcerán, J., Nieto, M.Á., Bazzini, A.A., Moreno-Mateos, M.A. (2025) Enhanced RNA-targeting CRISPR-Cas technology in zebrafish. Nature communications. 16:25912591

Morley, R.H., Lachani, K., Keefe, D., Gilchrist, M.J., Flicek, P., Smith, J.C., and Wardle, F.C. (2009) A gene regulatory network directed by zebrafish No tail accounts for its roles in mesoderm formation. Proceedings of the National Academy of Sciences of the United States of America. 106(10):3829-3834

Morrow, Z.T., Maxwell, A.M., Hoshijima, K., Talbot, J.C., Grunwald, D.J., Amacher, S.L. (2017) tbx6l and tbx16 are redundantly required for posterior paraxial mesoderm formation during zebrafish embryogenesis. Developmental Dynamics : an official publication of the American Association of Anatomists. 246(10):759-769

Mullins, M.C., Hammerschmidt, M., Kane, D.A., Odenthal, J., Brand, M., van Eeden, F.J., Furutani-Seiki, M., Granato, M., Haffter, P., Heisenberg, C.P., Jiang, Y.J., Kelsh, R.N., and Nüsslein-Volhard, C. (1996) Genes establishing dorsoventral pattern formation in the zebrafish embryo: the ventral specifying genes. Development (Cambridge, England). 123:81-93

Muthukumarasamy, K.M., Handore, K.L., Kakade, D.N., Shinde, M.V., Ranjan, S., Kumar, N., Sehrawat, S., Sachidanandan, C., Reddy, D.S. (2016) Identification of noreremophilane-based inhibitors of angiogenesis using zebrafish assays. Organic & biomolecular chemistry. 14(5):1569-78

Muyskens, J.B., and Kimmel, C.B. (2007) Tbx16 cooperates with Wnt11 in assembling the zebrafish organizer. Mechanisms of Development. 124(1):35-42

Müller, F., Lakatos, L., Dantonel, J., Strähle, U., and Tora, L. (2001) TBP is not universally required for zygotic RNA polymerase II transcription in zebrafish. Current biology : CB. 11(4):282-287

Nambiar, R.M., and Henion, P.D. (2004) Sequential antagonism of early and late Wnt-signaling by zebrafish colgate promotes dorsal and anterior fates. Developmental Biology. 267(1):165-80

Narayanan, A., and Lekven, A.C. (2012) Biphasic wnt8a expression is achieved through interactions of multiple regulatory inputs. Developmental Dynamics : an official publication of the American Association of Anatomists. 241(6):1062-1075

Nasevicius, A. and Ekker, S.C. (2000) Effective targeted gene 'knockdown' in zebrafish. Nature Genetics. 26(2):216-220

Naylor, R.W., Skvarca, L.B., Thisse, C., Thisse, B., Hukriede, N.A., Davidson, A.J. (2016) BMP and retinoic acid regulate anterior-posterior patterning of the non-axial mesoderm across the dorsal-ventral axis. Nature communications. 7:12197

Nelson, A.C., Cutty, S.J., Niini, M., Stemple, D.L., Flicek, P., Houart, C., Bruce, A., Wardle, F.C. (2014) Global identification of Smad2 and Eomesodermin targets in zebrafish identifies a conserved transcriptional network in mesendoderm and a novel role for Eomesodermin in repression of ectodermal gene expression. BMC Biology. 12:81

Neugebauer, J.M., Cadwallader, A.B., Amack, J.D., Bisgrove, B.W., and Yost, H.J. (2013) Differential roles for 3-OSTs in the regulation of cilia length and motility. Development (Cambridge, England). 140(18):3892-3902

Nicoli, S., Tobia, C., Gualandi, L., De Sena, G., and Presta, M. (2008) Calcitonin receptor-like receptor guides arterial differentiation in Zebrafish. Blood. 111(10):4965-4972

Nikaido, M., Kawakami, A., Sawada, A., Furutani-Seiki, M., Takeda, H., and Araki, K. (2002) Tbx24, encoding a T-box protein, is mutated in the zebrafish somite-segmentation mutant fused somites. Nature Genetics. 31(2):195-199

Nikaido, M., Tada, M., Saji, T., and Ueno, N. (1997) Conservation of BMP signaling in zebrafish mesoderm patterning. Mechanisms of Development. 61(1-2):75-88

Ninkovic, J., Tallafuss, A., Leucht, C., Topczewski, J., Tannhäuser, B., Solnica-Krezel, L., and Bally-Cuif, L. (2005) Inhibition of neurogenesis at the zebrafish midbrain-hindbrain boundary by the combined and dose-dependent activity of a new hairy/E(spl) gene pair. Development (Cambridge, England). 132(1):75-88

Niu, J., Guan, J., Li, R., Li, X., Zhai, J., Qi, J., He, Y. (2018) Cynoglossus semilaevis Rspo3 Regulates Embryo Development by Inhibiting the Wnt/β-Catenin Signaling Pathway.. International Journal of Molecular Sciences. 19(7)

Norris, M.L., Pauli, A., Gagnon, J.A., Lord, N.D., Rogers, K.W., Mosimann, C., Zon, L.I., Schier, A.F. (2017) Toddler signaling regulates mesodermal cell migration downstream of Nodal signaling. eLIFE. 6

Novikov, N., and Evans, T. (2013) Tmem88a mediates GATA-dependent specification of cardiomyocyte progenitors by restricting WNT signaling. Development (Cambridge, England). 140(18):3787-98

Oates, A.C., Bruce, A.E., and Ho, R.K. (2000) Too much interference: injection of double-stranded RNA has nonspecific effects in the zebrafish embryo. Developmental Biology. 224(1):20-28

Ochi, H., and Westerfield, M. (2009) Lbx2 regulates formation of myofibrils. BMC Developmental Biology. 9:13

Odenthal, J., Haffter, P., Vogelsang, E., Brand, M., van Eeden, F.J., Furutani-Seiki, M., Granato, M., Hammerschmidt, M., Heisenberg, C.P., Jiang, Y.J., Kane, D.A., Kelsh, R.N., Mullins, M.C., Warga, R.M., Allende, M.L., Weinberg, E.S., and Nüsslein-Volhard, C. (1996) Mutations affecting the formation of the notochord in the zebrafish, Danio rerio. Development (Cambridge, England). 123:103-115

Oishi, I., Kawakami, Y., Raya, A., Callol-Massot, C., and Izpisúa Belmonte, J.C. (2006) Regulation of primary cilia formation and left-right patterning in zebrafish by a noncanonical Wnt signaling mediator, duboraya. Nature Genetics. 38(11):1316-1322

Okada, K., Aoki, K., Tabei, T., Sugio, K., Imai, K., Bonkohara, Y., Kamachi, Y. (2022) Key sequence features of CRISPR RNA for dual-guide CRISPR-Cas9 ribonucleoprotein complexes assembled with wild-type or HiFi Cas9. Nucleic acids research. 50(5):2854-2871

Okuda, Y., Yoda, H., Uchikawa, M., Furutani-Seiki, M., Takeda, H., Kondoh, H., Kamachi, Y. (2006) Comparative genomic and expression analysis of group B1 sox genes in zebrafish indicates their diversification during vertebrate evolution. Developmental Dynamics : an official publication of the American Association of Anatomists. 235(3):811-825

Osborn, D.P.S., Li, K., Cutty, S.J., Nelson, A.C., Wardle, F.C., Hinits, Y., Hughes, S.M. (2020) Fgf-driven Tbx protein activities directly induce myf5 and myod to initiate zebrafish myogenesis. Development (Cambridge, England). 147(8):

Ota, S., Tonou-Fujimori, N., and Yamasu, K. (2009) The roles of the FGF signal in zebrafish embryos analyzed using constitutive activation and dominant-negative suppression of different FGF receptors. Mechanisms of Development. 126(1-2):1-17

Ott, E.B., Sakalis, P.A., Marques, I.J., and Bagowski, C.P. (2007) Characterization of the enigma family in zebrafish. Developmental Dynamics : an official publication of the American Association of Anatomists. 236(11):3144-3154

Paardekooper Overman, J., Preisinger, C., Prummel, K., Bonetti, M., Giansanti, P., Heck, A., Hertog, J.D. (2014) Phosphoproteomics-Mediated Identification of Fer Kinase as a Target of Mutant Shp2 in Noonan and LEOPARD Syndrome. PLoS One. 9:e106682

Parab, S., Quick, R.E., Matsuoka, R.L. (2021) Endothelial cell type-specific molecular requirements for angiogenesis drive fenestrated vessel development in the brain. eLIFE. 10:

Pattanayak, S., Sarode, B.R., Deiters, A., Chen, J.K. (2022) Bicyclic Caged Morpholino Oligonucleotides for Optical Gene Silencing. Chembiochem : a European journal of chemical biology. 23(21):e202200374

Pauli, A., Norris, M.L., Valen, E., Chew, G.L., Gagnon, J.A., Zimmerman, S., Mitchell, A., Ma, J., Dubrulle, J., Reyon, D., Tsai, S.Q., Joung, J.K., Saghatelian, A., and Schier, A.F. (2014) Toddler: an embryonic signal that promotes cell movement via Apelin receptors. Science (New York, N.Y.). 343(6172):1248636

Payumo, A.Y., McQuade, L.E., Walker, W.J., Yamazoe, S., Chen, J.K. (2016) Tbx16 regulates hox gene activation in mesodermal progenitor cells. Nature Chemical Biology. 12(9):694-701

Peeters, H., Voz, M.L., Verschueren, K., De Cat, B., Pendeville, H., Thienpont, B., Schellens, A., Belmont, J.W., David, G., Van De Ven, W.J., Fryns, J.P., Gewillig, M., Huylebroeck, D., Peers, B., and Devriendt, K. (2006) Sesn1 is a Novel Gene for Left-Right Asymmetry and Mediating Nodal Signaling. Human molecular genetics. 15(22):3369-3377

Pei, W., and Feldman, B. (2009) Identification of common and unique modifiers of zebrafish midline bifurcation and cyclopia. Developmental Biology. 326(1):201-211

Pelliccia, J.L., Jindal, G.A., Burdine, R.D. (2017) Gdf3 is required for robust Nodal signaling during germ layer formation and left-right patterning. eLIFE. 6

Perez-Camps, M., Tian, J., Chng, S.C., Sem, K.P., Sudhaharan, T., Teh, C., Wachsmuth, M., Korzh, V., Ahmed, S., Reversade, B. (2016) Quantitative imaging reveals real-time Pou5f3-Nanog complexes driving dorsoventral mesendoderm patterning in zebrafish. eLIFE. 5

Peterson, R.T., Mably, J.D., Chen, J.-N., and Fishman, M.C. (2001) Convergence of distinct pathways to heart patterning reveals by the small molecule concentramide and the mutation heart-and-soul. Current biology : CB. 11:1481-1491

Ping, X.L., Sun, B.F., Wang, L., Xiao, W., Yang, X., Wang, W.J., Adhikari, S., Shi, Y., Lv, Y., Chen, Y.S., Zhao, X., Li, A., Yang, Y., Dahal, U., Lou, X.M., Liu, X., Huang, J., Yuan, W.P., Zhu, X.F., Cheng, T., Zhao, Y.L., Wang, X., Rendtlew Danielsen, J.M., Liu, F., and Yang, Y.G. (2014) Mammalian WTAP is a regulatory subunit of the RNA N6-methyladenosine methyltransferase. Cell Research. 24(2):177-189

Plaut, I. (2000) Effects of fin size on swimming performance, swimming behaviour and routine activity of zebrafish Danio rerio. The Journal of experimental biology. 203(Pt.4):813-820

Pond, A.J.R., Hwang, S., Verd, B., Steventon, B. (2021) A deep learning approach for staging embryonic tissue isolates with small data. PLoS One. 16:e0244151

Postlethwait, J.H, Yan, Y.-L., Gates, M.A., Horne, S., Amores, A., Brownlie, A., Donovan, A., Egan, E.S., Force, A., Gong, Z., Goutel, C., Fritz, A., Kelsh, R., Knapik, E., Liao, E., Paw, B., Ransom, D., Singer, A., Thomson, M., Abduljabbar, T.S., Yelick, P., Beier, D., Joly, J.-S., Larhammar, D., Rosa, F., Westerfield, M., Zon, L.I., Johnson, S.L., and Talbot, W.S. (1998) Vertebrate genome evolution and the zebrafish gene map. Nature Genetics. 18:345-349

Poulain, M. and Lepage, T. (2002) Mezzo, a paired-like homeobox protein is an immediate target of Nodal signalling and regulates endoderm specification in zebrafish. Development (Cambridge, England). 129(21):4901-4914

Prajapati, R.S., Mitter, R., Vezzaro, A., Ish-Horowicz, D. (2020) Greb1 is required for axial elongation and segmentation in vertebrate embryos. Biology Open. 9(2):

Putiri, E., and Pelegri, F. (2011) The zebrafish maternal-effect gene mission impossible encodes the DEAH-box helicase Dhx16 and is essential for the expression of downstream endodermal genes. Developmental Biology. 353(2):275-289

Pálfy, M., Schulze, G., Valen, E., Vastenhouw, N.L. (2020) Chromatin accessibility established by Pou5f3, Sox19b and Nanog primes genes for activity during zebrafish genome activation. PLoS Genetics. 16:e1008546

Qi, J., Lee, H.J., Saquet, A., Cheng, X.N., Shao, M., Zheng, J.J., Shi, D.L. (2017) Autoinhibition of Dishevelled protein regulated by its extreme C terminus plays a distinct role in Wnt/β-catenin and Wnt/planar cell polarity (PCP) signaling pathways. The Journal of biological chemistry. 292:5898-5908

Quesada-Hernández, E., Caneparo, L., Schneider, S., Winkler, S., Liebling, M., Fraser, S.E., and Heisenberg, C.P. (2010) Stereotypical Cell Division Orientation Controls Neural Rod Midline Formation in Zebrafish. Current biology : CB. 20(21):1966-1972

Ragland, J.W., and Raible, D.W. (2004) Signals derived from the underlying mesoderm are dispensable for zebrafish neural crest induction. Developmental Biology. 276(1):16-30

Ramel, M.C., Buckles, G.R., and Lekven, A.C. (2004) Conservation of structure and functional divergence of duplicated Wnt8s in pufferfish. Developmental Dynamics : an official publication of the American Association of Anatomists. 231(2):441-448

Ramesh, S.T., Navyasree, K.V., Sah, S., Ashok, A.B., Qathoon, N., Mohanty, S., Swain, R.K., Umasankar, P.K. (2021) BMP2K phosphorylates AP-2 and regulates clathrin-mediated endocytosis. Traffic (Copenhagen, Denmark). 22(11):377-396

Rebagliati, M.R., Toyama, R., Fricke, C., Haffter, P., and Dawid, I.B. (1998) Zebrafish nodal-related genes are implicated in axial patterning and establishing left-right asymmetry. Developmental Biology. 199:261-272

Regan, J.C., Concha, M.L., Roussigne, M., Russell, C., and Wilson, S.W. (2009) An Fgf8-dependent bistable cell migratory event establishes CNS asymmetry. Neuron. 61(1):27-34

Reim, G., and Brand, M. (2006) Maternal control of vertebrate dorsoventral axis formation and epiboly by the POU domain protein Spg/Pou2/Oct4. Development (Cambridge, England). 133(14):2757-2770

Renucci, A., Lemarchandel, V., and Rosa, F. (1996) An activated form of type I serine/threonine kinase receptor TARAM-A reveals a specific signalling pathway involved in fish head organiser formation. Development (Cambridge, England). 122:3735-3743

Rhyu, D., Lee, H., Tanguay, R.L., Kim, K.T. (2019) Tris(1,3-dichloro-2-propyl)phosphate (TDCIPP) disrupts zebrafish tail fin development. Ecotoxicology and environmental safety. 182:109449

Rissi, M., Wittbrodt, J., Delot, E., Naegeli, M., and Rosa, F.M. (1995) Zebrafish Radar: a new member of the TGF-ß superfamily defines dorsal regions of the neural plate and the embryonic retina. Mechanisms of Development. 49(3):223-34

Rodaway, A., Takeda, H., Koshida, S., Broadbent, J., Price, B., Smith, J.C., Patient, R., and Holder, N. (1999) Induction of the mesendoderm in the zebrafish germ ring by yolk cell-derived TGF-ß; family signals and discrimination of mesoderm and endoderm by FGF. Development (Cambridge, England). 126(14):3067-3078

Rohr, K.B., Schulte-Merker, S., and Tautz, D. (1999) Zebrafish zic1 expression in brain and somites is affected by BMP and hedgehog signalling. Mechanisms of Development. 85(1-2):147-159

Roussigné, M., Bianco, I.H., Wilson, S.W., and Blader, P. (2009) Nodal signalling imposes left-right asymmetry upon neurogenesis in the habenular nuclei. Development (Cambridge, England). 136(9):1549-1557

Row, R., and Kimelman, D. (2009) Bmp inhibition is necessary for post-gastrulation patterning and morphogenesis of the zebrafish tailbud. Developmental Biology. 329(1):55-63

Row, R.H., Pegg, A., Kinney, B., Farr, G.H., Maves, L., Lowell, S., Wilson, V., Martin, B.L. (2018) BMP and FGF signaling interact to pattern mesoderm by controlling basic helix-loop-helix transcription factor activity. eLIFE. 7

Roy, N.M., Zambrzycka, E., Santangelo, J. (2017) Butyl benzyl phthalate (BBP) induces caudal defects during embryonic development. Environmental Toxicology and Pharmacology. 56:129-135

Rutherford, N.E., Wong, A.H., Bruce, A.E.E. (2019) Spatio-temporal characterization of dynamic epithelial filopodia during zebrafish epiboly. Developmental Dynamics : an official publication of the American Association of Anatomists. 248(10):997-1008

Sabel, J.L., d'Alençon, C., O'Brien, E.K., Otterloo, E.V., Lutz, K., Cuykendall, T.N., Schutte, B.C., Houston, D.W., and Cornell, R.A. (2009) Maternal Interferon Regulatory Factor 6 is required for the differentiation of primary superficial epithelia in Danio and Xenopus embryos. Developmental Biology. 325(1):249-262

Sagerström, C.G., Grinblat, Y., and Sive, H. (1996) Anteroposterior patterning in the zebrafish, Danio rerio: an explant assay reveals inductive and suppressive cell interactions. Development (Cambridge, England). 122:1873-1883

Sako, K., Pradhan, S.J., Barone, V., Inglés-Prieto, Á., Müller, P., Ruprecht, V., Čapek, D., Galande, S., Janovjak, H., Heisenberg, C.P. (2016) Optogenetic Control of Nodal Signaling Reveals a Temporal Pattern of Nodal Signaling Regulating Cell Fate Specification during Gastrulation. Cell Reports. 16(3):866-77

San, B., Chrispijn, N.D., Wittkopp, N., van Heeringen, S.J., Lagendijk, A.K., Aben, M., Bakkers, J., Ketting, R.F., Kamminga, L.M. (2016) Normal formation of a vertebrate body plan and loss of tissue maintenance in the absence of ezh2. Scientific Reports. 6:24658

Sarmah, B., Latimer, A.J., Appel, B., and Wente, S.R. (2005) Inositol polyphosphates regulate zebrafish left-right asymmetry. Developmental Cell. 9(1):133-145

Sarmah, S., Srivastava, R., McClintick, J.N., Janga, S.C., Edenberg, H.J., Marrs, J.A. (2020) Embryonic ethanol exposure alters expression of sox2 and other early transcripts in zebrafish, producing gastrulation defects. Scientific Reports. 10:3951

Saude, L., Woolley, K., Martin, P., Driever, W., and Stemple, D.L. (2000) Axis-inducing activities and cell fates of the zebrafish organizer. Development (Cambridge, England). 127(16):3407-3417

Sawada, A., Nishizaki, Y., Sato, H., Yada, Y., Nakayama, R., Yamamoto, S., Nishioka, N., Kondoh, H., and Sasaki, H. (2005) Tead proteins activate the Foxa2 enhancer in the node in cooperation with a second factor. Development (Cambridge, England). 132(21):4719-4729

Saydmohammed, M., Yagi, H., Calderon, M., Clark, M.J., Feinstein, T., Sun, M., Stolz, D.B., Watkins, S.C., Amack, J.D., Lo, C.W., Tsang, M. (2018) Vertebrate myosin 1d regulates left-right organizer morphogenesis and laterality. Nature communications. 9:3381

Schauer, A., Pinheiro, D., Hauschild, R., Heisenberg, C.P. (2020) Zebrafish embryonic explants undergo genetically encoded self-assembly. eLIFE. 9:

Schepis, A., Sepich, D., and Nelson, W.J. (2012) αE-catenin regulates cell-cell adhesion and membrane blebbing during zebrafish epiboly. Development (Cambridge, England). 139(3):537-46

Schild-Prufert, K., Giegerich, M., Schafer, M., Winkler, C., and Krohne, G. (2006) Structural and functional characterization of the zebrafish lamin B receptor. European journal of cell biology. 85(8):813-824

Schneider, I., Houston, D.W., Rebagliati, M.R., and Slusarski, D.C. (2008) Calcium fluxes in dorsal forerunner cells antagonize {beta}-catenin and alter left-right patterning. Development (Cambridge, England). 135(1):75-84

Schulte-Merker, S. and Smith, J.C. (1995) Mesoderm formation in response to Brachyury requires FGF signalling. Current biology : CB. 5:62-67

Schulte-Merker, S., Ho, R.K., Herrmann, B.G., and Nüsslein-Volhard, C. (1992) The protein product of the zebrafish homologue of the mouse T gene is expressed in nuclei of the germ ring and the notochord of the early embryo. Development (Cambridge, England). 116:1021-1032

Schwend, T., Loucks, E.J., Snyder, D., and Ahlgren, S.C. (2011) Requirement of Npc1 and availability of cholesterol for early embryonic cell movements in Zebrafish. Journal of Lipid Research. 52(7):1328-44

Schötz, E.M., Burdine, R.D., Jülicher, F., Steinberg, M.S., Heisenberg, C.P., and Foty, R.A. (2008) Quantitative differences in tissue surface tension influence zebrafish germ layer positioning. HFSP Journal. 2(1):42-56

Semino, C.E. and Allende, M.L. (2000) Chitin oligosaccharides as candidate patterning agents in zebrafish embryogenesis. The International journal of developmental biology. 44(2):183-193

Serbedzija, G.N., Chen, J.-N., and Fishman, M.C. (1998) Regulation in the heart field of zebrafish. Development (Cambridge, England). 125:1095-1101

Shanmugalingam, S. and Wilson, S.W. (1998) Isolation, expression and regulation of a zebrafish paraxis homologue. Mechanisms of Development. 78:85-89

Shao, M., Wang, M., Liu, Y.Y., Ge, Y.W., Zhang, Y.J., Shi, D.L. (2017) Vegetally localised Vrtn functions as a novel repressor to modulate bmp2b transcription during dorsoventral patterning in zebrafish.. Development (Cambridge, England). 144:3361-3374

Shestopalov, I.A., Pitt, C.L., and Chen, J.K. (2012) Spatiotemporal resolution of the Ntla transcriptome in axial mesoderm development. Nature Chemical Biology. 8(3):270-276

Shimizu, N., Ishitani, S., Sato, A., Shibuya, H., Ishitani, T. (2014) Hipk2 and PP1c Cooperate to Maintain Dvl Protein Levels Required for Wnt Signal Transduction. Cell Reports. 8(5):1391-404

Shu, X., Huang, J., Dong, Y., Choi, J., Langenbacher, A., and Chen, J.N. (2007) Na,K-ATPase α2 and Ncx4a regulate zebrafish left-right patterning. Development (Cambridge, England). 134(10):1921-1930

Siekmann, A.F., Standley, C., Fogarty, K.E., Wolfe, S.A., and Lawson, N.D. (2009) Chemokine signaling guides regional patterning of the first embryonic artery. Genes & Development. 23(19):2272-2277

Sittaramane, V., Pan, X., Glasco, D.M., Huang, P., Gurung, S., Bock, A., Li, S., Wang, H., Kawakami, K., Matise, M.P., and Chandrasekhar, A. (2013) The PCP protein Vangl2 regulates migration of hindbrain motor neurons by acting in floor plate cells, and independently of cilia function. Developmental Biology. 382(2):400-412

Smith, K.A., Noël, E., Thurlings, I., Rehmann, H., Chocron, S., and Bakkers, J. (2011) Bmp and Nodal Independently Regulate lefty1 Expression to Maintain Unilateral Nodal Activity during Left-Right Axis Specification in Zebrafish. PLoS Genetics. 7(9):e1002289

Solnica-Krezel, L. (2003) Vertebrate development: taming the nodal waves. Current biology : CB. 13(1):R7-R9

Solnica-Krezel, L., Stemple, D.L., Mountcastle-Shah, E., Rangini, Z., Neuhauss, S.C., Malicki, J., Schier, A.F., Stainier, D.Y., Zwartkruis, F., Abdelilah, S., and Driever, W. (1996) Mutations affecting cell fates and cellular rearrangements during gastrulation in zebrafish. Development (Cambridge, England). 123:67-80

Songhet, P., Adzic, D., Reibe, S., and Rohr, K.B. (2007) fgf1 is required for normal differentiation of erythrocytes in zebrafish primitive hematopoiesis. Developmental Dynamics : an official publication of the American Association of Anatomists. 236(3):633-643

Speirs, C.K., Jernigan, K.K., Kim, S.H., Cha, Y.I., Lin, F., Sepich, D.S., DuBois, R.N., Lee, E., and Solnica-Krezel, L. (2010) Prostaglandin Gbetagamma signaling stimulates gastrulation movements by limiting cell adhesion through Snai1a stabilization. Development (Cambridge, England). 137(8):1327-1337

Stemple, D.L., Solnica-Krezel, L., Zwartkruis, F., Neuhauss, S.C., Schier, A.F., Malicki, J., Stainier, D.Y., Abdelilah, S., Rangini, Z., Mountcastle-Shah, E., and Driever, W. (1996) Mutations affecting development of the notochord in zebrafish. Development (Cambridge, England). 123:117-128

Stickney, H.L., Barresi, M.J.F., and Devoto, S.H. (2000) Somite development in zebrafish. Developmental Dynamics : an official publication of the American Association of Anatomists. 219(3):287-303

Strähle, U., and Jesuthasan, S. (1993) Ultraviolet irradiation impairs epiboly in zebrafish embryos: evidence for a microtubule-dependent mechanism of epiboly. Development (Cambridge, England). 119:909-919

Strähle, U., Blader, P., Henrique, D., and Ingham, P.W. (1993) Axial, a zebrafish gene expressed along the developing body axis, shows altered expression in cyclops mutant embryos. Genes & Development. 7:1436-1446

Su, J., Zhu, Z., Wang, Y., Xiong, F., and Zou, J. (2008) The Cytomegalovirus Promoter-Driven Short Hairpin RNA Constructs Mediate Effective RNA Interference in Zebrafish In Vivo. Marine biotechnology (New York, N.Y.). 10(3):262-269

Sumanas, S., Kim, H.J., Hermanson, S., and Ekker, S.C. (2001) Zebrafish frizzled-2 morphant displays defects in body axis elongation. Genesis (New York, N.Y. : 2000). 30(3):114-118

Sumoy, L., Keasey, J.B., Dittman, T.D., and Kimelman, D. (1997) A role for notochord in axial vascular development revealed by analysis of phenotype and the expression of VEGR-2 in zebrafish flh and ntl mutant embryos. Mechanisms of Development. 63(1):15-27

Sun, Q., Liu, X., Gong, B., Wu, D., Meng, A., Jia, S. (2017) Alkbh4 and Atrn Act Maternally to Regulate Zebrafish Epiboly. International journal of biological sciences. 13:1051-1066

Sun, Z., Jin, P., Tian, T., Gu, Y., Chen, Y.G., and Meng, A. (2006) Activation and roles of ALK4/ALK7-mediated maternal TGFbeta signals in zebrafish embryo. Biochemical and Biophysical Research Communications. 345(2):694-703

Szenker-Ravi, E., Ott, T., Khatoo, M., de Bellaing, A.M., Goh, W.X., Chong, Y.L., Beckers, A., Kannesan, D., Louvel, G., Anujan, P., Ravi, V., Bonnard, C., Moutton, S., Schoen, P., Fradin, M., Colin, E., Megarbane, A., Daou, L., Chehab, G., Di Filippo, S., Rooryck, C., Deleuze, J.F., Boland, A., Arribard, N., Eker, R., Tohari, S., Ng, A.Y., Rio, M., Lim, C.T., Eisenhaber, B., Eisenhaber, F., Venkatesh, B., Amiel, J., Crollius, H.R., Gordon, C.T., Gossler, A., Roy, S., Attie-Bitach, T., Blum, M., Bouvagnet, P., Reversade, B. (2021) Discovery of a genetic module essential for assigning left-right asymmetry in humans and ancestral vertebrates. Nature Genetics. 54(1):62-72

Szeto, D.P., and Kimelman, D. (2004) Combinatorial gene regulation by Bmp and Wnt in zebrafish posterior mesoderm formation. Development (Cambridge, England). 131(15):3751-3760

Takamiya, M., and Campos-Ortega, J.A. (2006) Hedgehog signalling controls zebrafish neural keel morphogenesis via its level-dependent effects on neurogenesis. Developmental Dynamics : an official publication of the American Association of Anatomists. 235(4):978-997

Takesono, A., Moger, J., Faroq, S., Cartwright, E., Dawid, I.B., Wilson, S.W., and Kudoh, T. (2012) Solute carrier family 3 member 2 (Slc3a2) controls yolk syncytial layer (YSL) formation by regulating microtubule networks in the zebrafish embryo. Proceedings of the National Academy of Sciences of the United States of America. 109(9):3371-3376

Talbot, C.D., Walsh, M.D., Cutty, S.J., Elsayed, R., Vlachaki, E., Bruce, A.E.E., Wardle, F.C., Nelson, A.C. (2022) Eomes function is conserved between zebrafish and mouse and controls left-right organiser progenitor gene expression via interlocking feedforward loops. Frontiers in cell and developmental biology. 10:982477

Tallafuss, A., Gibson, D., Morcos, P., Li, Y., Seredick, S., Eisen, J., and Washbourne, P. (2012) Turning gene function ON and OFF using sense and antisense photo-morpholinos in zebrafish. Development (Cambridge, England). 139(9):1691-1699

Tao, S., Cai, Y., and Sampath, K. (2009) The Integrator subunits function in hematopoiesis by modulating Smad/BMP signaling. Development (Cambridge, England). 136(16):2757-2765

Teraoka, H., Urakawa, S., Nanba, S., Nagai, Y., Dong, W., Imagawa, T., Tanguay, R.L., Svoboda, K., Handley-Goldstone, H.M., Stegeman, J.J., and Hiraga, T. (2006) Muscular contractions in the zebrafish embryo are necessary to reveal thiuram-induced notochord distortions. Toxicology and applied pharmacology. 212(1):24-34

Tessadori, F., Noël, E.S., Rens, E.G., Magliozzi, R., Evers-van Gogh, I.J., Guardavaccaro, D., Merks, R.M., Bakkers, J. (2015) Nodal Signaling Range Is Regulated by Proprotein Convertase-Mediated Maturation. Developmental Cell. 32(5):631-9

Thisse, B., Wright, C.V.E., and Thisse, C. (2000) Activin- and Nodal-related factors control antero-posterior patterning of the zebrafish embryo. Nature. 403(6768):425-428

Thisse, C., Thisse, B., and Postlethwait, J.H. (1995) Expression of snail2, a second member of the zebrafish Snail family, in cephalic mesendoderm and presumptive neural crest of wild-type and spadetail mutant embryos. Developmental Biology. 172:86-99

Thorpe, C.J., Weidinger, G., and Moon, R.T. (2005) Wnt/β-catenin regulation of the Sp1-related transcription factor sp5l promotes tail development in zebrafish. Development (Cambridge, England). 132(8):1763-1772

Tilton, F., La Du, J.K., Vue, M., Alzarban, N., and Tanguay, R.L. (2006) Dithiocarbamates have a common toxic effect on zebrafish body axis formation. Toxicology and applied pharmacology. 216(1):55-68

Toh, K., Saunders, D., Verd, B., Steventon, B. (2022) Zebrafish neuromesodermal progenitors undergo a critical state transition in vivo. iScience. 25:105216

Tong, X., Xia, Z., Zu, Y., Telfer, H., Hu, J., Yu, J., Liu, H., Zhang, Q., Sodmergen, D., Lin, S., and Zhang, B. (2013) Ngs (notochord granular surface) encodes a novel type of intermediate filament family protein essential for notochord maintenance in zebrafish. The Journal of biological chemistry. 288(4):2711-2720

Topczewska, J.M., Topczewski, J., Shostak, A., Kume, T., Solnica-Krezel, L., and Hogan, B.L. (2001) The winged helix transcription factor Foxc1a is essential for somitogenesis in zebrafish. Genes & Development. 15(18):2483-2493

Toyama, R., O'Connell, M.L., Wright, C.V.E., Kuehn, M.R., and Dawid, I.B. (1995) Nodal induces ectopic goosecoid and lim1 expression and axis duplication in zebrafish. Development (Cambridge, England). 121:383-391

Trinh, L.A., Meyer, D., and Stainier, D.Y. (2003) The Mix family homeodomain gene bonnie and clyde functions with other components of the Nodal signaling pathway to regulate neural patterning in zebrafish. Development (Cambridge, England). 130(20):4989-4998

Truszkowski, L., Batur, D., Long, H., Tarbashevich, K., Vos, B.E., Trappmann, B., Raz, E. (2022) Primordial germ cells adjust their protrusion type while migrating in different tissue contexts in vivo. Development (Cambridge, England). 150(2):

Tsai, Y.J., Pan, H., Hung, C.M., Hou, P.T., Li, Y.C., Lee, Y.J., Shen, Y.T., Wu, T.T., and Li, C. (2011) The predominant protein arginine methyltransferase PRMT1 is critical for zebrafish convergence and extension during gastrulation. The FEBS journal. 278(6):905-917

Twigg, S.R., Lloyd, D., Jenkins, D., Elcioglu, N.E., Cooper, C.D., Al-Sannaa, N., Annagur, A., Gillessen-Kaesbach, G., Huning, I., Knight, S.J., Goodship, J.A., Keavney, B.D., Beales, P.L., Gileadi, O., McGowan, S.J., and Wilkie, A.O. (2012) Mutations in Multidomain Protein MEGF8 Identify a Carpenter Syndrome Subtype Associated with Defective Lateralization. American journal of human genetics. 91(5):897-905

Ulrich, F., Krieg, M., Schotz, E.M., Link, V., Castanon, I., Schnabel, V., Taubenberger, A., Mueller, D., Puech, PH., and Heisenberg, C.P. (2005) Wnt11 Functions in Gastrulation by Controlling Cell Cohesion through Rab5c and E-Cadherin. Developmental Cell. 9(4):555-564

van Boxtel, A.L., Chesebro, J.E., Heliot, C., Ramel, M.C., Stone, R.K., Hill, C.S. (2015) A Temporal Window for Signal Activation Dictates the Dimensions of a Nodal Signaling Domain. Developmental Cell. 35:175-185

van Eeden, F.J., Granato, M., Schach, U., Brand, M., Furutani-Seiki-, M., Haffter, P., Hammerschmidt, M., Heisenberg, C.P., Jiang, Y.J., Kane, D.A., Kelsh, R.N., Mullins, M.C., Odenthal, J., Warga, R.M., Allende, M.L., Weinberg, E.S., and Nüsslein-Volhard, C. (1996) Mutations affecting somite formation and patterning in the zebrafish, Danio rerio. Development (Cambridge, England). 123:153-164

Van Raay, T.J., Coffey, R.J., and Solnica-Krezel, L. (2007) Zebrafish Naked1 and Naked2 antagonize both canonical and non-canonical Wnt signaling. Developmental Biology. 309(2):151-168

Veerkamp, J., Rudolph, F., Cseresnyes, Z., Priller, F., Otten, C., Renz, M., Schaefer, L., and Abdelilah-Seyfried, S. (2013) Unilateral dampening of bmp activity by nodal generates cardiac left-right asymmetry. Developmental Cell. 24(6):660-667

Ventura Fernandes, B.H., Junqueira, M.S., MacRae, C., Silveira de Carvalho, L.R. (2024) Standardizing CRISPR-Cas13 knockdown technique to investigate the role of cdh2 gene in pituitary development through growth hormone expression and transcription factors. Frontiers in endocrinology. 15:14666381466638

Vicencio, J., Sánchez-Bolaños, C., Moreno-Sánchez, I., Brena, D., Vejnar, C.E., Kukhtar, D., Ruiz-López, M., Cots-Ponjoan, M., Rubio, A., Melero, N.R., Crespo-Cuadrado, J., Carolis, C., Pérez-Pulido, A.J., Giráldez, A.J., Kleinstiver, B.P., Cerón, J., Moreno-Mateos, M.A. (2022) Genome editing in animals with minimal PAM CRISPR-Cas9 enzymes. Nature communications. 13:2601

Vong, Y.H., Sivashanmugam, L., Leech, R., Zaucker, A., Jones, A., Sampath, K. (2021) The RNA-binding protein Igf2bp3 is critical for embryonic and germline development in zebrafish. PLoS Genetics. 17:e1009667

Vopalensky, P., Pralow, S., Vastenhouw, N.L. (2018) Reduced expression of the Nodal coreceptor Oep causes loss of mesendodermal competence in zebrafish. Development (Cambridge, England). 145(5)

Wang, C., Chen, X., Shi, W., Wang, F., Du, Z., Li, X., Yao, Y., Liu, T., Shao, T., Li, G., Hao, A. (2015) 2-bromopalmitate impairs neural stem/progenitor cell proliferation, promotes cell apoptosis and induces malformation in zebrafish embryonic brain. Neurotoxicology and teratology. 50:53-63

Wang, L., Liu, Z., Lin, H., Ma, D., Tao, Q., Liu, F. (2017) Epigenetic regulation of left-right asymmetry by DNA methylation. The EMBO journal. 36(20):2987-2997

Wang, T.F., Cheng, K.W., Chen, Y.H., Lin, M.D. (2026) Zebrafish PRL-3 Regulates Yolk Syncytial Layer Integrity and Actomyosin Contractility During Epiboly. International Journal of Molecular Sciences. 27:

Wang, Y., Seebald, J.L., Szeto, D.P., and Irudayaraj, J. (2010) Biocompatibility and Biodistribution of Surface-Enhanced Raman Scattering Nanoprobes in Zebrafish Embryos: In vivo and Multiplex Imaging. ACS nano. 4(7):4039-4053

Wang, Y., Wu, L., Wang, P., Lv, C., Yang, Z., and Tang, X. (2012) Manipulation of gene expression in zebrafish using caged circular morpholino oligomers. Nucleic acids research. 40(21):11155-11162

Wang, Y.W., Wei, C.Y., Dai, H.P., Zhu, Z.Y., and Sun, Y.H. (2013) Subtractive phage display technology identifies zebrafish marcksb that is required for gastrulation. Gene. 521(1):69-77

Warga, R.M. and Kane, D.A. (2003) One-eyed pinhead regulates cell motility independent of Squint/Cyclops signaling. Developmental Biology. 261(2):391-411

Warga, R.M., Kane, D.A. (2018) Probing Cadherin Interactions in Zebrafish with E- and N-Cadherin Missense Mutants. Genetics. 210(4):1391-1409

Warga, R.M., Mueller, R.L., Ho, R.K., and Kane, D.A. (2013) Zebrafish Tbx16 regulates intermediate mesoderm cell fate by attenuating Fgf activity. Developmental Biology. 383(1):75-89

Watson, C.J., Tang, W.J., Rojas, M.F., Fiedler, I.A.K., Morfin Montes de Oca, E., Cronrath, A.R., Callies, L.K., Swearer, A.A., Ahmed, A.R., Sethuraman, V., Addish, S., Farr, G.H., Gómez, A.E., Rai, J., Monstad-Rios, A.T., Gardiner, E.M., Karasik, D., Maves, L., Busse, B., Hsu, Y.H., Kwon, R.Y. (2022) wnt16 regulates spine and muscle morphogenesis through parallel signals from notochord and dermomyotome. PLoS Genetics. 18:e1010496

Webb, A.B., Lengyel, I.M., Jörg, D.J., Valentin, G., Jülicher, F., Morelli, L.G., Oates, A.C. (2016) Persistence, period and precision of autonomous cellular oscillators from the zebrafish segmentation clock. eLIFE. 5

Weger, M., Weger, B.D., Schink, A., Takamiya, M., Stegmaier, J., Gobet, C., Parisi, A., Kobitski, A.Y., Mertes, J., Krone, N., Strähle, U., Nienhaus, G.U., Mikut, R., Gachon, F., Gut, P., Dickmeis, T. (2020) MondoA regulates gene expression in cholesterol biosynthesis-associated pathways required for zebrafish epiboly. eLIFE. 9:

Wei, S., Dai, M., Liu, Z., Ma, Y., Shang, H., Cao, Y., Wang, Q. (2017) The guanine nucleotide exchange factor Net1 facilitates the specification of dorsal cell fates in zebrafish embryos by promoting maternal β-catenin activation. Cell Research. 27(2):202-225

Weidinger, G., Wolke, U., Köprunner, M., Thisse, C., Thisse, B. and Raz, E. (2002) Regulation of zebrafish primordial germ cell migration by attraction towards an intermediate target. Development (Cambridge, England). 129:25-36

Wells, S., Conran, J.G., Tamme, R., Gaudin, A., Webb, J., and Lardelli, M. (2010) Cryptic organisation within an apparently irregular rostrocaudal distribution of interneurons in the embryonic zebrafish spinal cord. Experimental cell research. 316(19):3292-3303

White, Y.A., Kyle, J.T., and Wood, A.W. (2009) Targeted Gene Knockdown in Zebrafish Reveals Distinct Intraembryonic Functions for Insulin-Like Growth Factor II Signaling. Endocrinology. 150(9):4366-4375

Williams, M.L.K., Sawada, A., Budine, T., Yin, C., Gontarz, P., Solnica-Krezel, L. (2018) Gon4l regulates notochord boundary formation and cell polarity underlying axis extension by repressing adhesion genes. Nature communications. 9:1319

Willot, V., Mathieu, J., Lu, Y., Schmid, B., Sidi, S., Yan, Y.-L., Postlethwait, J.H., Mullins, M., Rosa, F., and Peyriéras, N. (2002) Cooperative action of ADMP- and BMP-mediated pathways in regulating cell fates in the zebrafish gastrula. Developmental Biology. 241(1):59-78

Wilm, T.P., and Solnica-Krezel, L. (2005) Essential roles of a zebrafish prdm1/blimp1 homolog in embryo patterning and organogenesis. Development (Cambridge, England). 132(2):393-404

Windner, S.E., Bird, N.C., Patterson, S.E., Doris, R.A., and Devoto, S.H. (2012) Fss/Tbx6 is required for central dermomyotome cell fate in zebrafish. Biology Open. 1(8):806-814

Wong, K.L., Akiyama, R., Bessho, Y., Matsui, T. (2018) ERK Activity Dynamics during Zebrafish Embryonic Development. International Journal of Molecular Sciences. 20(1)

Woods, I.G., Wilson, C., Friedlander, B., Chang, P., Reyes, D.K., Nix, R., Kelly, P.D., Chu, F., Postlethwait, J.H., and Talbot, W.S. (2005) The zebrafish gene map defines ancestral vertebrate chromosomes. Genome research. 15(9):1307-1314

Wylie, A.D., Fleming, J.A., Whitener, A.E., and Lekven, A.C. (2014) Post-transcriptional regulation of wnt8a is essential to zebrafish axis development. Developmental Biology. 386(1):53-63

Xiao, Y., Gao, M., Gao, L., Zhao, Y., Hong, Q., Li, Z., Yao, J., Cheng, H., Zhou, R. (2016) Directed Differentiation of Zebrafish Pluripotent Embryonic Cells to Functional Cardiomyocytes. Stem Cell Reports. 7(3):370-82

Xie, Y., Chen, X., and Wagner, T.E. (1997) A ribozyme-mediated gene "knockdown" strategy for the identification of gene function in zebrafish. Proceedings of the National Academy of Sciences of the United States of America. 94:13777-13781

Xing, Y.Y., Cheng, X.N., Li, Y.L., Zhang, C., Saquet, A., Liu, Y.Y., Shao, M., Shi, D.L. (2018) Mutational analysis of dishevelled genes in zebrafish reveals distinct functions in embryonic patterning and gastrulation cell movements. PLoS Genetics. 14:e1007551

Xiong, C., Liu, X., Meng, A. (2015) The Kinase Activity-deficient Isoform of the Protein Araf Antagonizes Ras/Mitogen-activated Protein Kinase (Ras/MAPK) Signaling in the Zebrafish Embryo. The Journal of biological chemistry. 290(42):25512-21

Xu, P.F., Zhu, K.Y., Jin, Y., Chen, Y., Sun, X.J., Deng, M., Chen, S.J., Chen, Z., and Liu, T.X. (2010) Setdb2 restricts dorsal organizer territory and regulates left-right asymmetry through suppressing fgf8 activity. Proceedings of the National Academy of Sciences of the United States of America. 107(6):2521-2526

Xu, Q.L., Alldus, G., Holder, N., and Wilkinson, D.G. (1995) Expression of truncated Sek-1 receptor tyrosine kinase disrupts the segmental restriction of gene expression in the Xenopus and zebrafish hindbrain. Development (Cambridge, England). 121:4005-4016

Xu, X., Shuen, W.H., Chen, C., Goudevenou, K., Jones, P., and Sablitzky, F. (2014) Swap70b is required for convergent and extension cell movement during zebrafish gastrulation linking Wnt11 signalling and RhoA effector function. Developmental Biology. 386(1):191-203

Yabe, T., and Takada, S. (2012) Mesogenin causes embryonic mesoderm progenitors to differentiate during development of zebrafish tail somites. Developmental Biology. 370(2):213-222

Yamakoshi, K., and Shimoda, N. (2003) De novo DNA methylation at the CpG island of the zebrafish no tail gene. Genesis (New York, N.Y. : 2000). 37(4):195-202

Yamamoto, M., Morita, R., Mizoguchi, T., Matsuo, H., Isoda, M., Ishitani, T., Chitnis, A.B., Matsumoto, K., Crump, J.G., Hozumi, K., Yonemura, S., Kawakami, K., and Itoh, M. (2010) Mib-Jag1-Notch signalling regulates patterning and structural roles of the notochord by controlling cell-fate decisions. Development (Cambridge, England). 137(15):2527-2537

Yamashita, S., Miyagi, C., Fukada, T., Kagara, N., Che, Y.S., and Hirano, T. (2004) Zinc transporter LIVI controls epithelial-mesenchymal transition in zebrafish gastrula organizer. Nature. 429(6989):298-302

Yamazoe, S., McQuade, L.E., Chen, J.K. (2014) Nitroreductase-Activatable Morpholino Oligonucleotides for in Vivo Gene Silencing. ACS Chemical Biology. 9(9):1985-90

Yan, L., Chen, J., Zhu, X., Sun, J., Wu, X., Shen, W., Zhang, W., Tao, Q., Meng, A. (2018) Maternal Huluwa dictates the embryonic body axis through β-catenin in vertebrates. Science (New York, N.Y.). 362(6417)

Yan, Y.L., Hatta, K., Riggleman, B., and Postlethwait, J.H. (1995) Expression of a type II collagen gene in the zebrafish embryonic axis. Developmental Dynamics : an official publication of the American Association of Anatomists. 203:363-376

Yang, Y., and Thorpe, C. (2011) BMP and non-canonical Wnt signaling are required for inhibition of secondary tail formation in zebrafish. Development (Cambridge, England). 138(12):2601-2611

Yao, S., Xie, L., Qian, M., Yang, H., Zhou, L., Zhou, Q., Yan, F., Gou, L., Wei, Y., Zhao, X., and Mo, X. (2008) Pnas4 is a novel regulator for convergence and extension during vertebrate gastrulation. FEBS letters. 582(15):2325-2332

Ye, D., and Lin, F. (2013) S1pr2/Gα₁₃ signaling controls myocardial migration by regulating endoderm convergence. Development (Cambridge, England). 140(4):789-799

Ye, Z., Kimelman, D. (2020) hox13 genes are required for mesoderm formation and axis elongation during early zebrafish development. Development (Cambridge, England). 147(22):

Yeo, S.Y., Little, M.H., Yamada, T., Miyashita, T., Halloran, M.C., Kuwada, J.Y., Huh, T.L., and Okamoto, H. (2001) Overexpression of a slit homologue impairs convergent extension of the mesoderm and causes cyclopia in embryonic zebrafish. Developmental Biology. 230(1):1-17

Yoo, K.W., Maddirevula, S., Kumar, A., Ro, H., Huh, T.L., Rhee, M. (2017) Sinup is essential for the integrity of centrosomes and mitotic spindles in zebrafish embryos. Animal cells and systems. 21:93-99

Young, T., Poobalan, Y., Tan, E.K., Tao, S., Ong, S., Wehner, P., Schwenty-Lara, J., Lim, C.Y., Sadasivam, A., Lovatt, M., Wang, S.T., Ali, Y., Borchers, A., Sampath, K., Dunn, N.R. (2014) The PDZ domain protein Mcc is a novel effector of non-canonical Wnt signaling during convergence and extension in zebrafish. Development (Cambridge, England). 141:3505-16

Yue, Y., Jiang, M., He, L., Zhang, Z., Zhang, Q., Gu, C., Liu, M., Li, N., Zhao, Q. (2017) The transcription factor Foxc1a in zebrafish directly regulates expression of nkx2.5, encoding a transcriptional regulator of cardiac progenitor cells.. The Journal of biological chemistry. 293(2):638-650

Yuikawa, T., Sato, T., Ikeda, M., Tsuruoka, M., Yasuda, K., Sato, Y., Nasu, K., Yamasu, K. (2023) Elongation of the developing spinal cord is driven by Oct4-type transcription factor-mediated regulation of retinoic acid signaling in zebrafish embryos. Developmental Dynamics : an official publication of the American Association of Anatomists. 253(4):404-422

Zeng, X.X., Wilm, T.P., Sepich, D.S., and Solnica-Krezel, L. (2007) Apelin and Its Receptor Control Heart Field Formation during Zebrafish Gastrulation. Developmental Cell. 12(3):391-402

Zhang, C., Basta, T., Hernandez-Lagunas, L., Simpson, P., Stemple, D.L., Artinger, K.B., and Klymkowsky, M.W. (2004) Repression of nodal expression by maternal B1-type SOXs regulates germ layer formation in Xenopus and zebrafish. Developmental Biology. 273(1):23-37

Zhang, L., Huang, H., Zhou, F., Schimmel, J., Pardo, C.G., Zhang, T., Barakat, T.S., Sheppard, K.A., Mickanin, C., Porter, J.A., Vertegaal, A.C., van Dam, H., Gribnau, J., Lu, C.X., and Ten Dijke, P. (2012) RNF12 Controls Embryonic Stem Cell Fate and Morphogenesis in Zebrafish Embryos by Targeting Smad7 for Degradation. Molecular Cell. 46(5):650-661

Zhang, M., Zhang, J., Lin, S.C., and Meng, A. (2012) beta-Catenin 1 and beta-catenin 2 play similar and distinct roles in left-right asymmetric development of zebrafish embryos. Development (Cambridge, England). 139(11):2009-2019

Zhang, S., Xu, J., Kuang, X., Li, S., Li, X., Chen, D., Zhao, X., Feng, X. (2017) Biological impacts of glyphosate on morphology, embryo biomechanics and larval behavior in zebrafish (Danio rerio). Chemosphere. 181:270-280

Zhang, Y., Li, X., Qi, J., Wang, J., Liu, X., Zhang, H., Lin, S.C., and Meng, A. (2009) Rock2 controls TGFβ signaling and inhibits mesoderm induction in zebrafish embryos. Journal of Cell Science. 122(Pt 13):2197-2207

Zhang, Y., Qin, W., Lu, X., Xu, J., Huang, H., Bai, H., Li, S., Lin, S. (2017) Programmable base editing of zebrafish genome using a modified CRISPR-Cas9 system. Nature communications. 8:118

Zhang, Z., Qin, Z. (2018) Characterization of Midkine in tongue sole (Cynoglossus semilaevis)and its role on the germ layer genesis in zebrafish (Danio rerio). Comparative biochemistry and physiology. Part B, Biochemistry & molecular biology. 226:64-72

Zhao, J., Cao, Y., Zhao, C., Postlethwait, J., and Meng, A. (2003) An SP1-like transcription factor Spr2 acts downstream of Fgf signaling to mediate mesoderm induction. The EMBO journal. 22(22):6078-6088

Zhao, J., Sun, H., Deng, W., Li, D., Liu, Y., Lu, Y., Liu, Y., Tao, D., Zhang, S., and Ma, Y. (2010) Piwi-Like 2 Mediates Fibroblast Growth Factor Signaling during Gastrulation of Zebrafish Embryo. The Tohoku journal of experimental medicine. 222(1):63-68

Zhong, H., Xin, S., Zhao, Y., Lu, J., Li, S., Gong, J., Yang, Z., and Lin, S. (2010) Genetic approach to evaluate specificity of small molecule drug candidates inhibiting PLK1 using zebrafish. Molecular Biosystems. 6(8):1463-1468

Zhu, P., Xu, X., Lin, X. (2015) Both ciliary and non-ciliary functions of Foxj1a confer Wnt/β-catenin signaling in zebrafish left-right patterning. Biology Open. 4(11):1376-86

Ziegler, A., Duclaux-Loras, R., Revenu, C., Charbit-Henrion, F., Begue, B., Duroure, K., Grimaud, L., Guihot, A.L., Desquiret-Dumas, V., Zarhrate, M., Cagnard, N., Mas, E., Breton, A., Edouard, T., Billon, C., Frank, M., Colin, E., Lenaers, G., Henrion, D., Lyonnet, S., Faivre, L., Alembik, Y., Philippe, A., Moulin, B., Reinstein, E., Tzur, S., Attali, R., McGillivray, G., White, S.M., Gallacher, L., Kutsche, K., Schneeberger, P., Girisha, K.M., Nayak, S.S., Pais, L., Maroofian, R., Rad, A., Vona, B., Karimiani, E.G., Lekszas, C., Haaf, T., Martin, L., Ruemmele, F., Bonneau, D., Cerf-Bensussan, N., Del Bene, F., Parlato, M. (2021) Bi-allelic variants in IPO8 cause a connective tissue disorder associated with cardiovascular defects, skeletal abnormalities, and immune dysregulation. American journal of human genetics. 108(6):1126-1137

Zou, S., Kamei, H., Modi, Z., and Duan, C. (2009) Zebrafish IGF genes: gene duplication, conservation and divergence, and novel roles in midline and notochord development. PLoS One. 4(9):e7026

Özhan, G., Sezgin, E., Wehner, D., Pfister, A.S., Kühl, S.J., Kagermeier-Schenk, B., Kühl, M., Schwille, P., and Weidinger, G. (2013) Lypd6 Enhances Wnt/beta-Catenin Signaling by Promoting Lrp6 Phosphorylation in Raft Plasma Membrane Domains. Developmental Cell. 26(4):331-345

Wang, T.F., Cheng, K.W., Chen, Y.H., Lin, M.D. (2026) Zebrafish PRL-3 Regulates Yolk Syncytial Layer Integrity and Actomyosin Contractility During Epiboly. International Journal of Molecular Sciences. 27:

Fan, T.P., Lee, J.R., Lin, C.Y., Chen, Y.C., Cutting, A.E., Cameron, R.A., Yu, J.K., Su, Y.H. (2025) Deep homology of a brachyury cis-regulatory syntax and the evolutionary origin of the notochord. Science advances. 11:eadw3307eadw3307

Kawakami, H., Bailey, A., Gavin, E., Gearhart, M.D., Isabella, A.J., Kawakami, Y. (2025) Zebrafish sall1a and sall4 contribute to body elongation. Developmental Biology. :

Lu, T., Chen, A., Li, C., Li, K., Wang, S., Zhang, Y., Yang, B., Wang, J., Gong, Q., Li, A., Liu, X., Ma, P., Mao, B., Shi, D.L., Shao, M. (2025) N1-methylpseudouridine mRNA modification enhances efficiency and specificity of gene overexpression by preventing Prkra-mediated global translation repression. Nucleic acids research. 53:

Moreno-Sánchez, I., Hernández-Huertas, L., Nahón-Cano, D., Martínez-García, P.M., Treichel, A.J., Gómez-Marin, C., Tomás-Gallardo, L., da Silva Pescador, G., Kushawah, G., Egidy, R., Perera, A., Díaz-Moscoso, A., Cano-Ruiz, A., Walker, J.A., Muñoz, M.J., Holden, K., Galcerán, J., Nieto, M.Á., Bazzini, A.A., Moreno-Mateos, M.A. (2025) Enhanced RNA-targeting CRISPR-Cas technology in zebrafish. Nature communications. 16:25912591

Camacho-Macorra, C., Tabanera, N., Sánchez-Bustamante, E., Bovolenta, P., Cardozo, M.J. (2024) Maternal vgll4a regulates zebrafish epiboly through Yap1 activity. Frontiers in cell and developmental biology. 12:13626951362695

Kai, M., Kondo, M. (2024) Suppression of Pcdh8/paraxial protocadherin is required for efficient neighbor exchange in morphogenetic cell movement during zebrafish notochord formation. Scientific Reports. 14:2569725697

Labudina, A.A., Meier, M., Gimenez, G., Tatarakis, D., Ketharnathan, S., Mackie, B., Schilling, T.F., Antony, J., Horsfield, J.A. (2024) Cohesin composition and dosage independently affect early development in zebrafish. Development (Cambridge, England). 151(15):

Yao, W., Wei, Z., Tian, X., Tan, J., Liu, J. (2024) Gdf11 regulates left-right asymmetry development through TGF-β signal. Cell Proliferation. :e13765e13765

Das, U., Kundu, J., Shaw, P., Bose, C., Ghosh, A., Gupta, S., Sarkar, S., Bhadra, J., Sinha, S. (2023) Self-transfecting GMO-PMO chimera targeting Nanog enable gene silencing in vitro and suppresses tumor growth in 4T1 allografts in mouse. Molecular therapy. Nucleic acids. 32:203228203-228

McLeod, J.J., Rothschild, S.C., Francescatto, L., Kim, H., Tombes, R.M. (2023) Specific CaMKIIs mediate convergent extension cell movements in early zebrafish development. Developmental Dynamics : an official publication of the American Association of Anatomists. 253(4):390-403

Xue, N., Liu, X., Zhang, D., Wu, Y., Zhong, Y., Wang, J., Fan, W., Jiang, H., Zhu, B., Ge, X., Gonzalez, R.V.L., Chen, L., Zhang, S., She, P., Zhong, Z., Sun, J., Chen, X., Wang, L., Gu, Z., Zhu, P., Liu, M., Li, D., Zhong, T.P., Zhang, X. (2023) Improving adenine and dual base editors through introduction of TadA-8e and Rad51DBD. Nature communications. 14:12241224

Boutillon, A., Escot, S., Elouin, A., Jahn, D., González-Tirado, S., Starruß, J., Brusch, L., David, N.B. (2022) Guidance by followers ensures long-range coordination of cell migration through α-catenin mechanoperception. Developmental Cell. 57(12):1529-1544.e5

Ikeda, T., Inamori, K., Kawanishi, T., Takeda, H. (2022) Reemployment of Kupffer's vesicle cells into axial and paraxial mesoderm via transdifferentiation. Development, growth & differentiation. 64(3):163-177

Liu, Y., Lin, Z., Peng, Y., Jiang, Y., Zhang, X., Zhu, H., Zhang, L., Chen, J., Shu, X., Luo, M., Xie, D., Chen, Y., Liao, H., Liu, M., Zhang, X., Liu, S., Wang, H., Zhou, B., Sun, H. (2022) Embryonic organizer formation disorder leads to multiorgan dysplasia in Down syndrome. Cell Death & Disease. 13:10541054

Okada, K., Aoki, K., Tabei, T., Sugio, K., Imai, K., Bonkohara, Y., Kamachi, Y. (2022) Key sequence features of CRISPR RNA for dual-guide CRISPR-Cas9 ribonucleoprotein complexes assembled with wild-type or HiFi Cas9. Nucleic acids research. 50(5):2854-2871

Talbot, C.D., Walsh, M.D., Cutty, S.J., Elsayed, R., Vlachaki, E., Bruce, A.E.E., Wardle, F.C., Nelson, A.C. (2022) Eomes function is conserved between zebrafish and mouse and controls left-right organiser progenitor gene expression via interlocking feedforward loops. Frontiers in cell and developmental biology. 10:982477

Trengove, M., Wyett, R., Liongue, C., Ward, A.C. (2022) Functional Analysis of Zebrafish socs4a: Impacts on the Notochord and Sensory Function. Brain sciences. 12(2):

Vicencio, J., Sánchez-Bolaños, C., Moreno-Sánchez, I., Brena, D., Vejnar, C.E., Kukhtar, D., Ruiz-López, M., Cots-Ponjoan, M., Rubio, A., Melero, N.R., Crespo-Cuadrado, J., Carolis, C., Pérez-Pulido, A.J., Giráldez, A.J., Kleinstiver, B.P., Cerón, J., Moreno-Mateos, M.A. (2022) Genome editing in animals with minimal PAM CRISPR-Cas9 enzymes. Nature communications. 13:2601

Xing, C., Shen, W., Gong, B., Li, Y., Yan, L., Meng, A. (2022) Maternal Factors and Nodal Autoregulation Orchestrate Nodal Gene Expression for Embryonic Mesendoderm Induction in the Zebrafish. Frontiers in cell and developmental biology. 10:887987

Özelçi, E., Mailand, E., Rüegg, M., Oates, A.C., Sakar, M.S. (2022) Deconstructing body axis morphogenesis in zebrafish embryos using robot-assisted tissue micromanipulation. Nature communications. 13:79347934

Brunt, L., Greicius, G., Rogers, S., Evans, B.D., Virshup, D.M., Wedgwood, K.C.A., Scholpp, S. (2021) Vangl2 promotes the formation of long cytonemes to enable distant Wnt/β-catenin signaling. Nature communications. 12:2058

Darrah, K., Wesalo, J., Lukasak, B., Tsang, M., Chen, J.K., Deiters, A. (2021) Small Molecule Control of Morpholino Antisense Oligonucleotide Function through Staudinger Reduction. Journal of the American Chemical Society. 143(44):18665-18671

Guglielmi, L., Heliot, C., Kumar, S., Alexandrov, Y., Gori, I., Papaleonidopoulou, F., Barrington, C., East, P., Economou, A.D., French, P.M.W., McGinty, J., Hill, C.S. (2021) Smad4 controls signaling robustness and morphogenesis by differentially contributing to the Nodal and BMP pathways. Nature communications. 12:6374

Hu, B., Rodriguez, J.J., Kakkerla Balaraju, A., Gao, Y., Nguyen, N.T., Steen, H., Suhaib, S., Chen, S., Lin, F. (2021) Glypican 4 mediates Wnt transport between germ layers via signaling filopodia. The Journal of cell biology. 220(12):

Kroll, F., Powell, G.T., Ghosh, M., Gestri, G., Antinucci, P., Hearn, T.J., Tunbak, H., Lim, S., Dennis, H.W., Fernandez, J.M., Whitmore, D., Dreosti, E., Wilson, S.W., Hoffman, E.J., Rihel, J. (2021) A simple and effective F0 knockout method for rapid screening of behaviour and other complex phenotypes. eLIFE. 10:

Li, J.T., Cheng, X.N., Zhang, C., Shi, D.L., Shao, M. (2021) The Adaptor Protein Lurap1 Is Required for Cell Cohesion during Epiboly Movement in Zebrafish. Biology. 10(12):

Lohani, S., Funato, Y., Akieda, Y., Mizutani, K., Takai, Y., Ishitani, T., Miki, H. (2021) A novel role of PRL in regulating epithelial cell density by inducing apoptosis at confluence. Journal of Cell Science. 135(2):

Petridou, N.I., Corominas-Murtra, B., Heisenberg, C.P., Hannezo, E. (2021) Rigidity percolation uncovers a structural basis for embryonic tissue phase transitions. Cell. 184(7):1914-1928.e19

Pradhan, S.J., Reddy, P.C., Smutny, M., Sharma, A., Sako, K., Oak, M.S., Shah, R., Pal, M., Deshpande, O., Dsilva, G., Tang, Y., Mishra, R., Deshpande, G., Giraldez, A.J., Sonawane, M., Heisenberg, C.P., Galande, S. (2021) Satb2 acts as a gatekeeper for major developmental transitions during early vertebrate embryogenesis. Nature communications. 12:6094

Samarasinghe, K.T.G., Jaime-Figueroa, S., Burgess, M., Nalawansha, D.A., Dai, K., Hu, Z., Bebenek, A., Holley, S.A., Crews, C.M. (2021) Targeted degradation of transcription factors by TRAFTACs: TRAnscription Factor TArgeting Chimeras. Cell chemical biology. 28(5):648-661.e5

Szenker-Ravi, E., Ott, T., Khatoo, M., de Bellaing, A.M., Goh, W.X., Chong, Y.L., Beckers, A., Kannesan, D., Louvel, G., Anujan, P., Ravi, V., Bonnard, C., Moutton, S., Schoen, P., Fradin, M., Colin, E., Megarbane, A., Daou, L., Chehab, G., Di Filippo, S., Rooryck, C., Deleuze, J.F., Boland, A., Arribard, N., Eker, R., Tohari, S., Ng, A.Y., Rio, M., Lim, C.T., Eisenhaber, B., Eisenhaber, F., Venkatesh, B., Amiel, J., Crollius, H.R., Gordon, C.T., Gossler, A., Roy, S., Attie-Bitach, T., Blum, M., Bouvagnet, P., Reversade, B. (2021) Discovery of a genetic module essential for assigning left-right asymmetry in humans and ancestral vertebrates. Nature Genetics. 54(1):62-72

Willoughby, P.M., Allen, M., Yu, J., Korytnikov, R., Chen, T., Liu, Y., So, I., Macpherson, N., Mitchell, J.A., Fernandez-Gonzalez, R., Bruce, A.E.E. (2021) The recycling endosome protein Rab25 coordinates collective cell movements in the zebrafish surface epithelium. eLIFE. 10:

Yuikawa, T., Ikeda, M., Tsuda, S., Saito, S., Yamasu, K. (2021) Involvement of Oct4-type transcription factor Pou5f3 in posterior spinal cord formation in zebrafish embryos. Development, growth & differentiation. 63(6):306-322

Bosze, B., Ono, Y., Mattes, B., Sinner, C., Gourain, V., Thumberger, T., Tlili, S., Wittbrodt, J., Saunders, T.E., Strähle, U., Schug, A., Scholpp, S. (2020) Pcdh18a regulates endocytosis of E-cadherin during axial mesoderm development in zebrafish. Histochemistry and cell biology. 154(5):463-480

Castanon, I., Hannich, J.T., Abrami, L., Huber, F., Dubois, M., Müller, M., van der Goot, F.G., Gonzalez-Gaitan, M. (2020) Wnt-controlled sphingolipids modulate Anthrax Toxin Receptor palmitoylation to regulate oriented mitosis in zebrafish. Nature communications. 11:3317

Fulton, T., Trivedi, V., Attardi, A., Anlas, K., Dingare, C., Arias, A.M., Steventon, B. (2020) Axis Specification in Zebrafish Is Robust to Cell Mixing and Reveals a Regulation of Pattern Formation by Morphogenesis. Current biology : CB. 30(15):2984-2994.e3

Gu, J., Wang, H., Zhou, L., Fan, D., Shi, L., Ji, G., Gu, A. (2020) Oxidative stress in bisphenol AF-induced cardiotoxicity in zebrafish and the protective role of N-acetyl N-cysteine. The Science of the total environment. 731:139190

Hung, I.C., Chen, T.M., Lin, J.P., Tai, Y.L., Shen, T.L., Lee, S.J. (2020) Wnt5b integrates Fak1a to mediate gastrulation cell movements via Rac1 and Cdc42. Open Biology. 10:190273

Jung, J., Choi, I., Ro, H., Huh, T.L., Choe, J., Rhee, M. (2020) march5 Governs the Convergence and Extension Movement for Organization of the Telencephalon and Diencephalon in Zebrafish Embryos. Molecules and cells. 43(1):76-85

Kushawah, G., Hernandez-Huertas, L., Abugattas-Nuñez Del Prado, J., Martinez-Morales, J.R., DeVore, M.L., Hassan, H., Moreno-Sanchez, I., Tomas-Gallardo, L., Diaz-Moscoso, A., Monges, D.E., Guelfo, J.R., Theune, W.C., Brannan, E.O., Wang, W., Corbin, T.J., Moran, A.M., Sánchez Alvarado, A., Málaga-Trillo, E., Takacs, C.M., Bazzini, A.A., Moreno-Mateos, M.A. (2020) CRISPR-Cas13d Induces Efficient mRNA Knockdown in Animal Embryos. Developmental Cell. 54(6):805-817.e7

Li, W., Wu, Y., Yuan, M., Liu, X. (2020) Fluxapyroxad induces developmental delay in zebrafish (Danio rerio). Chemosphere. 256:127037

Liu, Y., Lin, Z., Sun, H. (2020) Cystic fibrosis transmembrane conductance regulator (CFTR) regulates embryonic organizer formation during zebrafish early embryogenesis. The International journal of developmental biology. 64:409-413

Prajapati, R.S., Mitter, R., Vezzaro, A., Ish-Horowicz, D. (2020) Greb1 is required for axial elongation and segmentation in vertebrate embryos. Biology Open. 9(2):

Quintanilla, C.A., Ho, R.K. (2020) The Cdx transcription factors and retinoic acid play parallel roles in antero-posterior position of the pectoral fin field during gastrulation. Mechanisms of Development. 164:103644

Schauer, A., Pinheiro, D., Hauschild, R., Heisenberg, C.P. (2020) Zebrafish embryonic explants undergo genetically encoded self-assembly. eLIFE. 9:

Vonica, A., Bhat, N., Phan, K., Guo, J., Iancu, L., Weber, J.A., Karger, A., Cain, J.W., Wang, E.C.E., DeStefano, G.M., O'Donnell-Luria, A.H., Christiano, A.M., Riley, B., Butler, S.J., Luria, V. (2020) Apcdd1 is a dual BMP/Wnt inhibitor in the developing nervous system and skin. Developmental Biology. 464(1):71-87

Williams, M.L.K., Solnica-Krezel, L. (2020) Nodal and Planar Cell Polarity signaling cooperate to regulate zebrafish convergence and extension gastrulation movements. eLIFE. 9:

Chen, W., Bian, C., You, X., Li, J., Ye, L., Wen, Z., Lv, Y., Zhang, X., Xu, J., Yang, S., Gu, R., Lin, X., Shi, Q. (2019) Genome Sequencing of the Japanese Eel (Anguilla japonica) for Comparative Genomic Studies on tbx4 and a tbx4 Gene Cluster in Teleost Fishes. Marine drugs. 17(7)

D'Agati, G., Cabello, E.M., Frontzek, K., Rushing, E.J., Klemm, R., Robinson, M.D., White, R.M., Mosimann, C., Burger, A. (2019) Active receptor tyrosine kinases, but not Brachyury, are sufficient to trigger chordoma in zebrafish. Disease models & mechanisms. 12(7):

Grimes, D.T., Patterson, V.L., Luna-Arvizu, G., Schottenfeld-Roames, J., Irons, Z.H., Burdine, R.D. (2019) Left-right asymmetric heart jogging increases the robustness of dextral heart looping in zebrafish. Developmental Biology. 459(2):79-86

Lee, G.H., Chang, C.L., Chiu, W.T., Hsiao, T.H., Chen, P.Y., Wang, K.C., Kuo, C.H., Chen, B.H., Shi, G.Y., Wu, H.L., Fu, T.F. (2019) A thrombomodulin-like gene is crucial to the collective migration of epibolic blastomeres during germ layer formation and organogenesis in zebrafish. Journal of Biomedical Science. 26:60

Liedtke, D., Orth, M., Meissler, M., Geuer, S., Knaup, S., Köblitz, I., Klopocki, E. (2019) ECM alterations in Fndc3a (Fibronectin Domain Containing Protein 3A) deficient zebrafish cause temporal fin development and regeneration defects. Scientific Reports. 9:13383

Reddy, P.C., Gungi, A., Ubhe, S., Pradhan, S.J., Kolte, A., Galande, S. (2019) Molecular signature of an ancient organizer regulated by Wnt/β-catenin signalling during primary body axis patterning in Hydra. Communications biology. 2:434

Rutherford, N.E., Wong, A.H., Bruce, A.E.E. (2019) Spatio-temporal characterization of dynamic epithelial filopodia during zebrafish epiboly. Developmental Dynamics : an official publication of the American Association of Anatomists. 248(10):997-1008

Thiessen, K.D., Grzegorski, S.J., Chin, Y., Higuchi, L., Wilkinson, C.J., Shavit, J.A., Kramer, K.L. (2019) Zebrafish otolith biomineralization requires polyketide synthase. Mechanisms of Development. 157:1-9

Čapek, D., Smutny, M., Tichy, A.M., Morri, M., Janovjak, H., Heisenberg, C.P. (2019) Light-activated Frizzled7 reveals a permissive role of non-canonical Wnt signaling in mesendoderm cell migration. eLIFE. 8:

Attardi, A., Fulton, T., Florescu, M., Shah, G., Muresan, L., Lenz, M.O., Lancaster, C., Huisken, J., van Oudenaarden, A., Steventon, B. (2018) Neuromesodermal progenitors are a conserved source of spinal cord with divergent growth dynamics. Development (Cambridge, England). 145(21)

Castillo-Robles, J., Ramírez, L., Spaink, H.P., Lomelí, H. (2018) smarce1 mutants have a defective endocardium and an increased expression of cardiac transcription factors in zebrafish. Scientific Reports. 8:15369

Farrell, J.A., Wang, Y., Riesenfeld, S.J., Shekhar, K., Regev, A., Schier, A.F. (2018) Single-cell reconstruction of developmental trajectories during zebrafish embryogenesis. Science (New York, N.Y.). 360(6392)

Huang, C.X., Huang, Y., Duan, X.K., Zhang, M., Tu, J.P., Liu, J.X., Liu, H., Chen, T.S., Wang, W.M., Wang, H.L. (2018) Zebrafish miR-462-731 regulates hematopoietic specification and pu.1-dependent primitive myelopoiesis. Cell death and differentiation. 26(8):1531-1544

Kamei, H., Yoneyama, Y., Hakuno, F., Sawada, R., Shimizu, T., Duan, C., Takahashi, S.I. (2018) Catch-up growth in zebrafish embryo requires neural crest cells sustained by Irs1-signaling. Endocrinology. 159(4):1547-1560

Liu, X., Zhang, Q., Li, S., Mi, P., Chen, D., Zhao, X., Feng, X. (2018) Developmental toxicity and neurotoxicity of synthetic organic insecticides in zebrafish (Danio rerio): A comparative study of deltamethrin, acephate, and thiamethoxam. Chemosphere. 199:16-25

Mönnich, M., Borgeskov, L., Breslin, L., Jakobsen, L., Rogowski, M., Doganli, C., Schrøder, J.M., Mogensen, J.B., Blinkenkjær, L., Harder, L.M., Lundberg, E., Geimer, S., Christensen, S.T., Andersen, J.S., Larsen, L.A., Pedersen, L.B. (2018) CEP128 Localizes to the Subdistal Appendages of the Mother Centriole and Regulates TGF-β/BMP Signaling at the Primary Cilium. Cell Reports. 22:2584-2592

Roussigné, M., Wei, L., Tsingos, E., Kuchling, F., Alkobtawi, M., Tsalavouta, M., Wittbrodt, J., Carl, M., Blader, P., Wilson, S.W. (2018) Left/right asymmetric collective migration of parapineal cells is mediated by focal FGF signaling activity in leading cells. Proceedings of the National Academy of Sciences of the United States of America. 115(42):E9812-E9821

Saydmohammed, M., Vollmer, L.L., Onuoha, E.O., Maskrey, T.S., Gibson, G., Watkins, S.C., Wipf, P., Vogt, A., Tsang, M. (2018) A High-Content Screen Reveals New Small-Molecule Enhancers of Ras/Mapk Signaling as Probes for Zebrafish Heart Development. Molecules. 23(7)

Schredelseker, T., Driever, W. (2018) Bsx controls pineal complex development. Development (Cambridge, England). 145(13):

Vopalensky, P., Pralow, S., Vastenhouw, N.L. (2018) Reduced expression of the Nodal coreceptor Oep causes loss of mesendodermal competence in zebrafish. Development (Cambridge, England). 145(5)

Wang, Z., Nakayama, Y., Tsuda, S., Yamasu, K. (2018) The role of gastrulation brain homeobox 2 (gbx2) in the development of the ventral telencephalon in zebrafish embryos. Differentiation; research in biological diversity. 99:28-40

Warga, R.M., Kane, D.A. (2018) Probing Cadherin Interactions in Zebrafish with E- and N-Cadherin Missense Mutants. Genetics. 210(4):1391-1409

Wong, K.L., Akiyama, R., Bessho, Y., Matsui, T. (2018) ERK Activity Dynamics during Zebrafish Embryonic Development. International Journal of Molecular Sciences. 20(1)

Xing, Y.Y., Cheng, X.N., Li, Y.L., Zhang, C., Saquet, A., Liu, Y.Y., Shao, M., Shi, D.L. (2018) Mutational analysis of dishevelled genes in zebrafish reveals distinct functions in embryonic patterning and gastrulation cell movements. PLoS Genetics. 14:e1007551

Zhang, Z., Qin, Z. (2018) Characterization of Midkine in tongue sole (Cynoglossus semilaevis)and its role on the germ layer genesis in zebrafish (Danio rerio). Comparative biochemistry and physiology. Part B, Biochemistry & molecular biology. 226:64-72

Bisgrove, B.W., Su, Y.C., Yost, H.J. (2017) Maternal Gdf3 is an obligatory cofactor in nodal signaling for embryonic axis formation in zebrafish. eLIFE. 6

Gong, B., Shen, W., Xiao, W., Meng, Y., Meng, A., Jia, S. (2017) The Sec14-like phosphatidylinositol transfer proteins Sec14l3/SEC14L2 act as GTPase proteins to mediate Wnt/Ca²⁺ signaling.. eLIFE. 6

Hozumi, S., Aoki, S., Kikuchi, Y. (2017) Nuclear movement regulated by non-Smad Nodal signaling via JNK is associated with Smad signaling during zebrafish endoderm specification. Development (Cambridge, England). 144(21):4015-4025

Li, X., Zhang, Y., Li, X., Feng, D., Zhang, S., Zhao, X., Chen, D., Zhang, Z., Feng, X. (2017) Comparative analysis of biological effect of corannulene and graphene on developmental and sleep/wake profile of zebrafish larvae. Acta biomaterialia. 55:271-282

Liu, J., Hemphill, J., Samanta, S., Tsang, M., Deiters, A. (2017) Genetic Code Expansion in Zebrafish Embryos and Its Application to Optical Control of Cell Signaling. Journal of the American Chemical Society. 139(27):9100-9103

Liu, Y., Sepich, D.S., Solnica-Krezel, L. (2017) Stat3/Cdc25a-dependent cell proliferation promotes embryonic axis extension during zebrafish gastrulation. PLoS Genetics. 13:e1006564

Montague, T.G., Schier, A.F. (2017) Vg1-Nodal heterodimers are the endogenous inducers of mesendoderm. eLIFE. 6

Morris, E.A., Bodin, S., Delaval, B., Comunale, F., Georget, V., Costa, M.L., Lutfalla, G., Gauthier-Rouvière, C. (2017) Flotillins control zebrafish epiboly through their role in cadherin-mediated cell-cell adhesion. Biology of the cell. 109(5):210-221

Nelson, A.C., Cutty, S.J., Gasiunas, S.N., Deplae, I., Stemple, D.L., Wardle, F.C. (2017) In Vivo Regulation of the Zebrafish Endoderm Progenitor Niche by T-Box Transcription Factors. Cell Reports. 19:2782-2795

Pelliccia, J.L., Jindal, G.A., Burdine, R.D. (2017) Gdf3 is required for robust Nodal signaling during germ layer formation and left-right patterning. eLIFE. 6

Rogers, K.W., Lord, N.D., Gagnon, J.A., Pauli, A., Zimmerman, S., Aksel, D.C., Reyon, D., Tsai, S.Q., Joung, J.K., Schier, A.F. (2017) Nodal patterning without Lefty inhibitory feedback is functional but fragile. eLIFE. 6

Shao, M., Wang, M., Liu, Y.Y., Ge, Y.W., Zhang, Y.J., Shi, D.L. (2017) Vegetally localised Vrtn functions as a novel repressor to modulate bmp2b transcription during dorsoventral patterning in zebrafish.. Development (Cambridge, England). 144:3361-3374

Smutny, M., Ákos, Z., Grigolon, S., Shamipour, S., Ruprecht, V., Čapek, D., Behrndt, M., Papusheva, E., Tada, M., Hof, B., Vicsek, T., Salbreux, G., Heisenberg, C.P. (2017) Friction forces position the neural anlage. Nature cell biology. 19(4):306-317

van Boxtel, A.L., Economou, A.D., Heliot, C., Hill, C.S. (2017) Long-Range Signaling Activation and Local Inhibition Separate the Mesoderm and Endoderm Lineages. Developmental Cell. 44(2):179-191.e5

Wang, L., Liu, Z., Lin, H., Ma, D., Tao, Q., Liu, F. (2017) Epigenetic regulation of left-right asymmetry by DNA methylation. The EMBO journal. 36(20):2987-2997

Wei, S., Ning, G., Li, L., Yan, Y., Yang, S., Cao, Y., Wang, Q. (2017) A GEF activity-independent function for nuclear Net1 in Nodal/Smad2 signal transduction and mesendoderm formation. Journal of Cell Science. 130(18):3072-3082

Yokokura, T., Kamei, H., Shibano, T., Yamanaka, D., Sawada-Yamaguchi, R., Hakuno, F., Takahashi, S.I., Shimizu, T. (2017) The Short-Stature Homeobox-Containing Gene (shox/SHOX) Is Required for the Regulation of Cell Proliferation and Bone Differentiation in Zebrafish Embryo and Human Mesenchymal Stem Cells.. Frontiers in endocrinology. 8:125

Yue, Y., Jiang, M., He, L., Zhang, Z., Zhang, Q., Gu, C., Liu, M., Li, N., Zhao, Q. (2017) The transcription factor Foxc1a in zebrafish directly regulates expression of nkx2.5, encoding a transcriptional regulator of cardiac progenitor cells.. The Journal of biological chemistry. 293(2):638-650

Zhang, Y., O'Leary, M.N., Peri, S., Wang, M., Zha, J., Melov, S., Kappes, D.J., Feng, Q., Rhodes, J., Amieux, P.S., Morris, D.R., Kennedy, B.K., Wiest, D.L. (2017) Ribosomal Proteins Rpl22 and Rpl22l1 Control Morphogenesis by Regulating Pre-mRNA Splicing. Cell Reports. 18:545-556

Ando, K., Fukuhara, S., Izumi, N., Nakajima, H., Fukui, H., Kelsh, R.N., Mochizuki, N. (2016) Clarification of mural cell coverage of vascular endothelial cells by live imaging of zebrafish. Development (Cambridge, England). 143(8):1328-39

Bhadra, J., Pattanayak, S., Khan, P.P., Kundu, J., Sinha, S. (2016) Internal Oligoguanidinium-based Cellular Transporter Enhances Antisense Efficacy of Morpholinos in in vitro and Zebrafish model. Bioconjugate Chemistry. 27(10):2254-2259

Burdine, R.D., Grimes, D.T. (2016) Antagonistic interactions in the zebrafish midline prior to the emergence of asymmetric gene expression are important for left-right patterning. Philosophical transactions of the Royal Society of London. Series B, Biological sciences. 371(1710)

Deshwar, A.R., Chng, S.C., Ho, L., Reversade, B., Scott, I.C. (2016) The Apelin receptor enhances Nodal/TGFβ signaling to ensure proper cardiac development. eLIFE. 5

Frisca, F., Colquhoun, D., Goldshmit, Y., Änkö, M.L., Pébay, A., Kaslin, J. (2016) Role of ectonucleotide pyrophosphatase/phosphodiesterase 2 in the midline axis formation of zebrafish. Scientific Reports. 6:37678

Gore, A.V., Athans, B., Iben, J.R., Johnson, K., Russanova, V., Castranova, D., Pham, V.N., Butler, M.G., Williams-Simons, L., Nichols, J.T., Bresciani, E., Feldman, B., Kimmel, C.B., Liu, P.P., Weinstein, B.M. (2016) Epigenetic regulation of hematopoiesis by DNA methylation. eLIFE. 5:e11813

Guo, L., Yamashita, H., Kou, I., Takimoto, A., Meguro-Horike, M., Horike, S.I., Sakuma, T., Miura, S., Adachi, T., Yamamoto, T., Ikegawa, S., Hiraki, Y., Shukunami, C. (2016) Functional Investigation of a Non-coding Variant Associated with Adolescent Idiopathic Scoliosis in Zebrafish: Elevated Expression of the Ladybird Homeobox Gene Causes Body Axis Deformation. PLoS Genetics. 12:e1005802

Hu, H., Xin, N., Liu, J., Liu, M., Wang, Z., Wang, W., Zhang, Q., Qi, J. (2016) Characterization of F-spondin in Japanese flounder (Paralichthys olivaceus) and its role in the nervous system development of teleosts. Gene. 575(2 Pt 3):623-31

Khuansuwan, S., Clanton, J.A., Dean, B.J., Patton, J.G., Gamse, J.T. (2016) A transcription factor network controls cell migration and fate decisions in the developing zebrafish pineal complex. Development (Cambridge, England). 143(14):2641-50

Langdon, Y.G., Fuentes, R., Zhang, H., Abrams, E.W., Marlow, F.L., Mullins, M.C. (2016) Split top: A maternal cathepsin B that regulates dorsoventral patterning and morphogenesis. Development (Cambridge, England). 143(6):1016-28

Lindy, A.S., Basehore, M.J., Munisha, M., Williams, A.L., Friez, M.J., Writzl, K., Willems, P., Dougan, S.T. (2016) Identification of a novel insertion mutation in FGFR3 that causes thanatophoric dysplasia type 1. American journal of medical genetics. Part A. 170(6):1573-9

McCarthy, N., Sidik, A., Bertrand, J.Y., Eberhart, J.K. (2016) An Fgf-Shh signaling hierarchy regulates early specification of the zebrafish skull. Developmental Biology. 415(2):261-77

Muthukumarasamy, K.M., Handore, K.L., Kakade, D.N., Shinde, M.V., Ranjan, S., Kumar, N., Sehrawat, S., Sachidanandan, C., Reddy, D.S. (2016) Identification of noreremophilane-based inhibitors of angiogenesis using zebrafish assays. Organic & biomolecular chemistry. 14(5):1569-78

Payumo, A.Y., McQuade, L.E., Walker, W.J., Yamazoe, S., Chen, J.K. (2016) Tbx16 regulates hox gene activation in mesodermal progenitor cells. Nature Chemical Biology. 12(9):694-701

Qi, J., Dong, Z., Shi, Y., Wang, X., Qin, Y., Wang, Y., Liu, D. (2016) NgAgo-based fabp11a gene knockdown causes eye developmental defects in zebrafish. Cell Research. 26(12):1349-1352

Sako, K., Pradhan, S.J., Barone, V., Inglés-Prieto, Á., Müller, P., Ruprecht, V., Čapek, D., Galande, S., Janovjak, H., Heisenberg, C.P. (2016) Optogenetic Control of Nodal Signaling Reveals a Temporal Pattern of Nodal Signaling Regulating Cell Fate Specification during Gastrulation. Cell Reports. 16(3):866-77

Stapel, L.C., Lombardot, B., Broaddus, C., Kainmueller, D., Jug, F., Myers, E.W., Vastenhouw, N.L. (2016) Automated detection and quantification of single RNAs at cellular resolution in zebrafish embryos. Development (Cambridge, England). 143(3):540-6

Webb, A.B., Lengyel, I.M., Jörg, D.J., Valentin, G., Jülicher, F., Morelli, L.G., Oates, A.C. (2016) Persistence, period and precision of autonomous cellular oscillators from the zebrafish segmentation clock. eLIFE. 5

Zampedri, C., Tinoco-Cuellar, M., Carrillo-Rosas, S., Diaz-Tellez, A., Ramos-Balderas, J.L., Pelegri, F., Maldonado, E. (2016) Zebrafish P54 RNA helicases are cytoplasmic granule residents that are required for development and stress resilience. Biology Open. 5(10):1473-1484

Astone, M., Pizzi, M., Peron, M., Domenichini, A., Guzzardo, V., Töchterle, S., Tiso, N., Rugge, M., Meyer, D., Argenton, F., Vettori, A. (2015) A GFP-Tagged Gross Deletion on Chromosome 1 Causes Malignant Peripheral Nerve Sheath Tumors and Carcinomas in Zebrafish. PLoS One. 10:e0145178

Bouldin, C.M., Manning, A.J., Peng, Y.H., Farr, G.H., Hung, K.L., Dong, A., Kimelman, D. (2015) Wnt signaling and tbx16 form a bistable switch to commit bipotential progenitors to mesoderm. Development (Cambridge, England). 142:2499-507

Dubrulle, J., Jordan, B.M., Akhmetova, L., Farrell, J.A., Kim, S.H., Solnica-Krezel, L., Schier, A.F. (2015) Response to Nodal morphogen gradient is determined by the kinetics of target gene induction. eLIFE. 4

Fang, X., Zhang, B., Thisse, B., Bloom, G.S., Thisse, C. (2015) IQGAP3 Is Essential for Cell Proliferation and Motility During Zebrafish Embryonic Development. Cytoskeleton (Hoboken, N.J.). 72(8):422-33

Gu, W., Monteiro, R., Zuo, J., Simões, F.C., Martella, A., Andrieu-Soler, C., Grosveld, F., Sauka-Spengler, T., Patient, R. (2015) A Novel TGFβ Modulator that Uncouples R-Smad/I-Smad-Mediated Negative Feedback from R-Smad/Ligand-Driven Positive Feedback. PLoS Biology. 13:e1002051

Kenyon, E.J., Campos, I., Bull, J.C., Williams, P.H., Stemple, D.L., Clark, M.D. (2015) Zebrafish Rab5 Proteins and a role for Rab5ab in nodal signalling. Developmental Biology. 397(2):212-24

Labalette, C., Wassef, M.A., Desmarquet-Trin Dinh, C., Bouchoucha, Y.X., Le Men, J., Charnay, P., Gilardi-Hebenstreit, P. (2015) Molecular dissection of segment formation in the developing hindbrain. Development (Cambridge, England). 142:185-95

Li-Villarreal, N., Forbes, M.M., Loza, A.J., Chen, J., Ma, T., Helde, K., Moens, C.B., Shin, J., Sawada, A., Hindes, A.E., Dubrulle, J., Schier, A.F., Longmore, G.D., Marlow, F.L., Solnica-Krezel, L. (2015) Dachsous1b cadherin regulates actin and microtubule cytoskeleton during early zebrafish embryogenesis. Development (Cambridge, England). 142(15):2704-18

Moreno-Ayala, R., Schnabel, D., Salas-Vidal, E., Lomelí, H. (2015) PIAS-like protein Zimp7 is required for the restriction of the Zebrafish organizer and mesoderm development. Developmental Biology. 403(1):89-100

Oka, Y., Sato, T.N. (2015) Whole-mount single molecule FISH method for zebrafish embryo. Scientific Reports. 5:8571

Payumo, A.Y., Walker, W.J., McQuade, L.E., Yamazoe, S., Chen, J.K. (2015) Optochemical Dissection of T-box Gene-Dependent Medial Floor Plate Development. ACS Chemical Biology. 10(6):1466-75

Tessadori, F., Noël, E.S., Rens, E.G., Magliozzi, R., Evers-van Gogh, I.J., Guardavaccaro, D., Merks, R.M., Bakkers, J. (2015) Nodal Signaling Range Is Regulated by Proprotein Convertase-Mediated Maturation. Developmental Cell. 32(5):631-9

van Boxtel, A.L., Chesebro, J.E., Heliot, C., Ramel, M.C., Stone, R.K., Hill, C.S. (2015) A Temporal Window for Signal Activation Dictates the Dimensions of a Nodal Signaling Domain. Developmental Cell. 35:175-185

Wang, Y., Zhang, Y., Li, X., Sun, M., Wei, Z., Wang, Y., Gao, A., Chen, D., Zhao, X., Feng, X. (2015) Exploring the Effects of Different Types of Surfactants on Zebrafish Embryos and Larvae. Scientific Reports. 5:10107

Xiong, C., Liu, X., Meng, A. (2015) The Kinase Activity-deficient Isoform of the Protein Araf Antagonizes Ras/Mitogen-activated Protein Kinase (Ras/MAPK) Signaling in the Zebrafish Embryo. The Journal of biological chemistry. 290(42):25512-21

Zhang, P., He, Q., Chen, D., Liu, W., Wang, L., Zhang, C., Ma, D., Li, W., Liu, B., Liu, F. (2015) G protein-coupled receptor 183 facilitates endothelial-to-hematopoietic transition via Notch1 inhibition. Cell Research. 25:1093-107

Zhu, P., Xu, X., Lin, X. (2015) Both ciliary and non-ciliary functions of Foxj1a confer Wnt/β-catenin signaling in zebrafish left-right patterning. Biology Open. 4(11):1376-86

Bajard, L., Morelli, L.G., Ares, S., Pécréaux, J., Jülicher, F., Oates, A.C. (2014) Wnt-regulated dynamics of positional information in zebrafish somitogenesis. Development (Cambridge, England). 141:1381-91

Buchan, J.G., Gray, R.S., Gansner, J.M., Alvarado, D.M., Burgert, L., Gitlin, J.D., Gurnett, C.A., Goldsmith, M.I. (2014) Kinesin family member 6 (kif6) is necessary for spine development in zebrafish. Developmental Dynamics : an official publication of the American Association of Anatomists. 243(12):1646-57

Chang, W.N., Lee, G.H., Kao, T.T., Lin, C.Y., Hsiao, T.H., Tsai, J.N., Chen, B.H., Chen, Y.H., Wu, H.R., Tsai, H.J., Fu, T.F. (2014) Knocking down 10-formyltetrahydrofolate dehydrogenase increased oxidative stress and impeded zebrafish embryogenesis by obstructing morphogenetic movement. Biochimica et biophysica acta. General subjects. 1840(7):2340-2350

Choi, H.M., Beck, V.A., Pierce, N.A. (2014) Next-Generation in Situ Hybridization Chain Reaction: Higher Gain, Lower Cost, Greater Durability. ACS nano. 8(5):4284-94

Eroglu, B., Min, J.N., Zhang, Y., Szurek, E., Moskophidis, D., Eroglu, A., and Mivechi, N.F. (2014) An essential role for heat shock transcription factor binding protein 1 (HSBP1) during early embryonic development. Developmental Biology. 386(2):448-460

Fitzpatrick, P., Shattil, S.J., Ablooglu, A.J. (2014) C-terminal COOH of Integrin beta1 Is Necessary for beta1 Association with the Kindlin-2 Adapter Protein. The Journal of biological chemistry. 289:11183-93

Fuller, K., O'connell, J.T., Gordon, J., Mauti, O., Eggenschwiler, J. (2014) Rab23 regulates Nodal signaling in vertebrate left-right patterning independently of the Hedgehog pathway. Developmental Biology. 391(2):182-195

Haberle, V., Li, N., Hadzhiev, Y., Plessy, C., Previti, C., Nepal, C., Gehrig, J., Dong, X., Akalin, A., Suzuki, A.M., van IJcken, W.F., Armant, O., Ferg, M., Strähle, U., Carninci, P., Müller, F., and Lenhard, B. (2014) Two independent transcription initiation codes overlap on vertebrate core promoters. Nature. 507(7492):381-385

Junker, J.P., Noël, E.S., Guryev, V., Peterson, K.A., Shah, G., Huisken, J., McMahon, A.P., Berezikov, E., Bakkers, J., van Oudenaarden, A. (2014) Genome-wide RNA Tomography in the Zebrafish Embryo. Cell. 159:662-75

Khuansuwan, S., Gamse, J.T. (2014) Identification of differentially expressed genes during development of the zebrafish pineal complex using RNA sequencing. Developmental Biology. 395(1):144-53

Kotkamp, K., Kur, E., Wendik, B., Polok, B.K., Ben-Dor, S., Onichtchouk, D., Driever, W. (2014) Pou5f1/Oct4 promotes cell survival via direct activation of mych expression during zebrafish gastrulation. PLoS One. 9:e92356

Li, L., Chen, D., Li, J., Wang, X., Wang, N., Xu, C., and Wang, Q.K. (2014) Aggf1 acts at the top of the genetic regulatory hierarchy in specification of hemangioblasts in zebrafish. Blood. 123(4):501-8

Maragh, S., Miller, R.A., Bessling, S.L., Wang, G., Hook, P.W., McCallion, A.S. (2014) Rbm24a and Rbm24b Are Required for Normal Somitogenesis. PLoS One. 9:e105460

Ostrup, O., Reiner, A.H., Aleström, P., Collas, P. (2014) The specific alteration of histone methylation profiles by DZNep during early zebrafish development. Biochimica et biophysica acta. Gene regulatory mechanisms. 1839(11):1307-15

Paardekooper Overman, J., Yi, J.S., Bonetti, M., Soulsby, M., Preisinger, C., Stokes, M.P., Hui, L., Silva, J.C., Overvoorde, J., Giansanti, P., Heck, A.J., Kontaridis, M.I., den Hertog, J., Bennett, A.M. (2014) PZR Coordinates Shp2 Noonan and LEOPARD Syndrome Signaling in Zebrafish and Mice. Molecular and cellular biology. 34(15):2874-89

Ping, X.L., Sun, B.F., Wang, L., Xiao, W., Yang, X., Wang, W.J., Adhikari, S., Shi, Y., Lv, Y., Chen, Y.S., Zhao, X., Li, A., Yang, Y., Dahal, U., Lou, X.M., Liu, X., Huang, J., Yuan, W.P., Zhu, X.F., Cheng, T., Zhao, Y.L., Wang, X., Rendtlew Danielsen, J.M., Liu, F., and Yang, Y.G. (2014) Mammalian WTAP is a regulatory subunit of the RNA N6-methyladenosine methyltransferase. Cell Research. 24(2):177-189

Superina, S., Borovina, A., and Ciruna, B. (2014) Analysis of maternal-zygotic ugdh mutants reveals divergent roles for HSPGs in vertebrate embryogenesis and provides new insight into the initiation of left-right asymmetry. Developmental Biology. 387(2):154-166

Wei, C.Y., Wang, H.P., Zhu, Z.Y., and Sun, Y.H. (2014) Transcriptional factors Smad1 and Smad9 act redundantly to mediate zebrafish ventral specification downstream of Smad5. The Journal of biological chemistry. 289(10):6604-18

Xiao, Q., Xia, J.H., Zhang, X.J., Li, Z., Wang, Y., Zhou, L., Gui, J.F. (2014) Type-IV Antifreeze Proteins are Essential for Epiboly and Convergence in Gastrulation of Zebrafish Embryos. International journal of biological sciences. 10:715-32

Xu, X., He, Y., Sun, L., Ma, S., Luo, C. (2014) Maternal Vsx1 plays an essential role in regulating prechordal mesendoderm and forebrain formation in zebrafish. Developmental Biology. 394(2):264-76

Yamazoe, S., Liu, Q., McQuade, L.E., Deiters, A., Chen, J.K. (2014) Sequential Gene Silencing Using Wavelength-Selective Caged Morpholino Oligonucleotides. Angewandte Chemie (International ed. in English). 53(38):10114-8

Young, T., Poobalan, Y., Tan, E.K., Tao, S., Ong, S., Wehner, P., Schwenty-Lara, J., Lim, C.Y., Sadasivam, A., Lovatt, M., Wang, S.T., Ali, Y., Borchers, A., Sampath, K., Dunn, N.R. (2014) The PDZ domain protein Mcc is a novel effector of non-canonical Wnt signaling during convergence and extension in zebrafish. Development (Cambridge, England). 141:3505-16

Amemiya, C.T., Alfoldi, J., Lee, A.P., Fan, S., Philippe, H., MacCallum, I., Braasch, I., Manousaki, T., Schneider, I., Rohner, N., Organ, C., Chalopin, D., Smith, J.J., Robinson, M., Dorrington, R.A., Gerdol, M., Aken, B., Biscotti, M.A., Barucca, M., Baurain, D., Berlin, A.M., Blatch, G.L., Buonocore, F., Burmester, T., Campbell, M.S., Canapa, A., Cannon, J.P., Christoffels, A., de Moro, G., Edkins, A.L., Fan, L., Fausto, A.M., Feiner, N., Forconi, M., Gamieldien, J., Gnerre, S., Gnirke, A., Goldstone, J.V., Haerty, W., Hahn, M.E., Hesse, U., Hoffmann, S., Johnson, J., Karchner, S.I., Karaku, S., Lara, M., Levin, J.Z., Litman, G.W., Mauceli, E., Miyake, T., Mueller, M.G., Nelson, D.R., Nitsche, A., Olmo, E., Ota, T., Pallavicini, A., Panji, S., Picone, B., Ponting, C.P., Prohaska, S.J., Przybylski, D., Saha, N.R., Ravi, V., Ribeiro, F.J., Sauka-Spengler, T., Scapigliati, G., Searle, S.M.J., Sharpe, T., Simakov, O., Stadler, P.F., Stegeman, J.J., Sumiyama, K., Tabbaa, D., Tafer, H., Turner-Maier, J., van Heusden, P., White, S., Williams, L., Yandell, M., Brinkmann, H., Volff, J.N., Tabin, C.J., Shubin, N., Schartl, M., Jaffe, D.B., Postlethwait, J.H., Venkatesh, B., Palma, F.D., Lander, E.S., Meyer, A., and Lindblad-Toh, K. (2013) The African coelacanth genome provides insights into tetrapod evolution. Nature. 496:311-316

Arrington, C.B., Peterson, A.G., and Yost, H.J. (2013) Sdc2 and Tbx16 regulate Fgf2-dependent epithelial cell morphogenesis in the ciliated organ of asymmetry. Development (Cambridge, England). 140(19):4102-4109

Borovina, A., and Ciruna, B. (2013) IFT88 Plays a Cilia- and PCP-Independent Role in Controlling Oriented Cell Divisions during Vertebrate Embryonic Development. Cell Reports. 5(1):37-43

Burkhalter, M.D., Fralish, G.B., Premont, R.T., Caron, M.G., and Philipp, M. (2013) Grk5l Controls Heart Development by Limiting mTOR Signaling during Symmetry Breaking. Cell Reports. 4(4):625-632

Cheng, P., Andersen, P., Hassel, D., Kaynak, B.L., Limphong, P., Juergensen, L., Kwon, C., and Srivastava, D. (2013) Fibronectin mediates mesendodermal cell fate decisions. Development (Cambridge, England). 140(12):2587-2596

Colombo, A., Palma, K., Armijo, L., Mione, M., Signore, I.A., Morales, C., Guerrero, N., Meynard, M.M., Pérez, R., Suazo, J., Marcelain, K., Briones, L., Härtel, S., Wilson, S.W., and Concha, M.L. (2013) Daam1a mediates asymmetric habenular morphogenesis by regulating dendritic and axonal outgrowth. Development (Cambridge, England). 140(19):3997-4007

Dong, Z., Peng, J., and Guo, S. (2013) Stable Gene Silencing in Zebrafish with Spatiotemporally Targetable RNA Interference. Genetics. 193(4):1065-1071

Fodor, E., Zsigmond, A., Horváth, B., Molnár, J., Nagy, I., Tóth, G., Wilson, S.W., and Varga, M. (2013) Full transcriptome analysis of early dorsoventral patterning in zebrafish. PLoS One. 8(7):e70053

Hashiguchi, M., and Mullins, M.C. (2013) Anteroposterior and dorsoventral patterning are coordinated by an identical patterning clock. Development (Cambridge, England). 140(9):1970-1980

Hochgreb-Hägele, T., Yin, C., Koo, D.E., Bronner, M.E., and Stainier, D.Y. (2013) Laminin beta1a controls distinct steps during the establishment of digestive organ laterality. Development (Cambridge, England). 140(13):2734-2745

Huang, C.J., Wilson, V., Pennings, S., MacRae, C.A., and Mullins, J. (2013) Sequential effects of spadetail, one-eyed pinhead and no tail on midline convergence of nephric primordia during zebrafish embryogenesis. Developmental Biology. 384(2):290-300

Jayashankar, V., Nguyen, M.J., Carr, B.W., Zheng, D.C., Rosales, J.B., Rosales, J.B., and Weiser, D.C. (2013) Protein Phosphatase 1 beta Paralogs Encode the Zebrafish Myosin Phosphatase Catalytic Subunit. PLoS One. 8(9):e75766

Kapp, L.D., Abrams, E.W., Marlow, F.L., and Mullins, M.C. (2013) The integrator complex subunit 6 (ints6) confines the dorsal organizer in vertebrate embryogenesis. PLoS Genetics. 9(10):e1003822

Kumari, P., Gilligan, P.C., Lim, S., Tran, L.D., Winkler, S., Philp, R., and Sampath, K. (2013) An essential role for maternal control of Nodal signaling. eLIFE. 2:e00683

Lam, P.Y., Kamei, C.N., Mangos, S., Mudumana, S., Liu, Y., and Drummond, I.A. (2013) odd-skipped related 2 is required for fin chondrogenesis in zebrafish. Developmental Dynamics : an official publication of the American Association of Anatomists. 242(11):1284-92

Lee, R.T., Knapik, E.W., Thiery, J.P., and Carney, T.J. (2013) An exclusively mesodermal origin of fin mesenchyme demonstrates that zebrafish trunk neural crest does not generate ectomesenchyme. Development (Cambridge, England). 140(14):2923-2932

Lenhart, K.F., Holtzman, N.G., Williams, J.R., and Burdine, R.D. (2013) Integration of Nodal and BMP Signals in the Heart Requires FoxH1 to Create Left-Right Differences in Cell Migration Rates That Direct Cardiac Asymmetry. PLoS Genetics. 9(1):e1003109

Liu, X., Xiong, C., Jia, S., Zhang, Y., Chen, Y.G., Wang, Q., and Meng, A. (2013) Araf kinase antagonizes Nodal-Smad2 activity in mesendoderm development by directly phosphorylating the Smad2 linker region. Nature communications. 4:1728

Miyares, R.L., Stein, C., Renisch, B., Anderson, J.L., Hammerschmidt, M., and Farber, S.A. (2013) Long-Chain Acyl-CoA Synthetase 4A Regulates Smad Activity and Dorsoventral Patterning in the Zebrafish Embryo. Developmental Cell. 27(6):635-647

Neugebauer, J.M., Cadwallader, A.B., Amack, J.D., Bisgrove, B.W., and Yost, H.J. (2013) Differential roles for 3-OSTs in the regulation of cilia length and motility. Development (Cambridge, England). 140(18):3892-3902

Novikov, N., and Evans, T. (2013) Tmem88a mediates GATA-dependent specification of cardiomyocyte progenitors by restricting WNT signaling. Development (Cambridge, England). 140(18):3787-98

Potok, M.E., Nix, D.A., Parnell, T.J., and Cairns, B.R. (2013) Reprogramming the maternal zebrafish genome after fertilization to match the paternal methylation pattern. Cell. 153(4):759-772

Qian, M., Yao, S., Jing, L., He, J., Xiao, C., Zhang, T., Meng, W., Zhu, H., Xu, H., and Mo, X. (2013) ENC1-like Integrates the Retinoic Acid/FGF Signaling Pathways to Modulate Ciliogenesis of Kupffer's Vesicle during Zebrafish Embryonic Development. Developmental Biology. 374(1):85-95

Sesé, B., Barrero, M.J., Fabregat, M.C., Sander, V., and Izpisua Belmonte, J.C. (2013) SMYD2 is induced during cell differentiation and participates in early development. The International journal of developmental biology. 57(5):357-364

Stuckenholz, C., Lu, L., Thakur, P.C., Choi, T.Y., Shin, D., and Bahary, N. (2013) Sfrp5 Modulates Both Wnt and BMP Signaling and Regulates Gastrointestinal Organogensis in the Zebrafish, Danio rerio. PLoS One. 8(4):e62470

Tong, X., Xia, Z., Zu, Y., Telfer, H., Hu, J., Yu, J., Liu, H., Zhang, Q., Sodmergen, D., Lin, S., and Zhang, B. (2013) Ngs (notochord granular surface) encodes a novel type of intermediate filament family protein essential for notochord maintenance in zebrafish. The Journal of biological chemistry. 288(4):2711-2720

Veerkamp, J., Rudolph, F., Cseresnyes, Z., Priller, F., Otten, C., Renz, M., Schaefer, L., and Abdelilah-Seyfried, S. (2013) Unilateral dampening of bmp activity by nodal generates cardiac left-right asymmetry. Developmental Cell. 24(6):660-667

Wang, Y.W., Wei, C.Y., Dai, H.P., Zhu, Z.Y., and Sun, Y.H. (2013) Subtractive phage display technology identifies zebrafish marcksb that is required for gastrulation. Gene. 521(1):69-77

Winata, C.L., Kondrychyn, I., Kumar, V., Srinivasan, K.G., Orlov, Y., Ravishankar, A., Prabhakar, S., Stanton, L.W., Korzh, V., and Mathavan, S. (2013) Genome wide analysis reveals zic3 interaction with distal regulatory elements of stage specific developmental genes in zebrafish. PLoS Genetics. 9(10):e1003852

Ye, D., and Lin, F. (2013) S1pr2/Gα₁₃ signaling controls myocardial migration by regulating endoderm convergence. Development (Cambridge, England). 140(4):789-799

Zhao, J., Lambert, G., Meijer, A.H., and Rosa, F.M. (2013) The transcription factor Vox represses endoderm development by interacting with Casanova and Pou2. Development (Cambridge, England). 140(5):1090-1099

Ahn, D., You, K.H., and Kim, C.H. (2012) Evolution of the Tbx6/16 Subfamily Genes in Vertebrates: Insights from Zebrafish. Mol. Biol. Evol.. 29(12):3959-3983

Beghini, A., Corlazzoli, F., Del Giacco, L., Re, M., Lazzaroni, F., Brioschi, M., Valentini, G., Ferrazzi, F., Ghilardi, A., Righi, M., Turrini, M., Mignardi, M., Cesana, C., Bronte, V., Nilsson, M., Morra, E., and Cairoli, R. (2012) Regeneration-associated WNT Signaling Is Activated in Long-term Reconstituting AC133(bright) Acute Myeloid Leukemia Cells. Neoplasia (New York, N.Y.). 14(12):1236-1248

Cadwalader, E.L., Condic, M.L., and Yost, H.J. (2012) 2-O-sulfotransferase regulates Wnt signaling, cell adhesion and cell cycle during zebrafish epiboly. Development (Cambridge, England). 139(7):1296-1305

Cast, A.E., Gao, C., Amack, J.D., and Ware, S.M. (2012) An essential and highly conserved role for Zic3 in left-right patterning, gastrulation and convergent extension morphogenesis. Developmental Biology. 364(1):22-31

Chu, L.T., Fong, S.H., Kondrychyn, I., Loh, S.L., Ye, Z., and Korzh, V. (2012) Yolk syncytial layer formation is a failure of cytokinesis mediated by Rock1 function in the early zebrafish embryo. Biology Open. 1(8):747-753

De Rienzo, G., Gutzman, J.H., and Sive, H. (2012) Efficient shRNA-Mediated Inhibition of Gene Expression in Zebrafish. Zebrafish. 9(3):97-107

Du, S., Draper, B.W., Mione, M., Moens, C.B., and Bruce, A.E. (2012) Differential regulation of epiboly initiation and progression by zebrafish Eomesodermin A. Developmental Biology. 362(1):11-23

English, M.A., Lei, L., Blake, T., Wincovitch, S.M., Sood, R., Azuma, M., Hickstein, D., and Paul Liu, P. (2012) Incomplete splicing, cell division defects, and hematopoietic blockage in dhx8 mutant zebrafish. Developmental Dynamics : an official publication of the American Association of Anatomists. 241(5):879-889

French, V.M., van de Laar, I.M., Wessels, M.W., Rohe, C., Roos-Hesselink, J.W., Wang, G., Frohn-Mulder, I.M., Severijnen, L.A., de Graaf, B.M., Schot, R., Breedveld, G., Mientjes, E., van Tienhoven, M., Jadot, E., Jiang, Z., Verkerk, A., Swagemakers, S., Venselaar, H., Rahimi, Z., Najmabadi, H., Meijers-Heijboer, H., de Graaff, E., Helbing, W.A., Willemsen, R., Devriendt, K., Belmont, J.W., Oostra, B.A., Amack, J.D., and Bertoli-Avella, A.M. (2012) NPHP4 Variants Are Associated With Pleiotropic Heart Malformations. Circulation research. 110(12):1564-1574

Hu, S.N., Yu, H., Zhang, Y.B., Wu, Z.L., Yan, Y.C., Li, Y.X., Li, Y.Y., and Li, Y.P. (2012) Splice blocking of zygotic sox31 leads to developmental arrest shortly after Mid-Blastula Transition and induces apoptosis in zebrafish. FEBS letters. 586(3):222-228

Khan, A., Nakamoto, A., Okamoto, S., Tai, M., Nakayama, Y., Kobayashi, K., Kawamura, A., Takeda, H., and Yamasu, K. (2012) Pou2, a class V POU-type transcription factor in zebrafish, regulates dorsoventral patterning and convergent extension movement at different blastula stages. Mechanisms of Development. 129(9-12):219-235

Kok, F.O., Taibi, A., Wanner, S.J., Xie, X., Moravec, C.E., Love, C.E., Prince, V.E., Mumm, J.S., and Sirotkin, H.I. (2012) Zebrafish rest regulates developmental gene expression but not neurogenesis. Development (Cambridge, England). 139(20):3838-3848

Lambaerts, K., Van Dyck, S., Mortier, E., Ivarssonm, Y., Degeest, G., Luyten, A., Vermeiren, E., Peers, B., David, G., and Zimmermann, P. (2012) Syntenin, a syndecan adaptor and an Arf6 phosphatidylinositol 4,5-bisphosphate effector, is essential for epiboly and gastrulation cell movements in zebrafish. Journal of Cell Science. 125(5):1129-1140

Liang, D., Jia, W., Li, J., Li, K., and Zhao, Q. (2012) Retinoic Acid signaling plays a restrictive role in zebrafish primitive myelopoiesis. PLoS One. 7(2):e30865

Liu, X., Ning, G., Meng, A., and Wang, Q. (2012) MicroRNA-206 regulates cell movements during zebrafish gastrulation by targeting prickle1a and regulating JNK2 phosphorylation. Molecular and cellular biology. 32(14):2934-2942

Martin, B.L., and Kimelman, D. (2012) Canonical Wnt Signaling Dynamically Controls Multiple Stem Cell Fate Decisions during Vertebrate Body Formation. Developmental Cell. 22(1):223-232

Miyake, A., Nihno, S., Murakoshi, Y., Satsuka, A., Nakayama, Y., and Itoh, N. (2012) Neucrin, a novel secreted antagonist of canonical Wnt signaling, plays roles in developing neural tissues in zebrafish. Mechanisms of Development. 128(11-12):577-590

Nishiyama, T., Kaneda, R., Ono, T., Tohyama, S., Hashimoto, H., Endo, J., Tsuruta, H., Yuasa, S., Ieda, M., Makino, S., and Fukuda, K. (2012) miR-142-3p is essential for hematopoiesis and affects cardiac cell fate in zebrafish. Biochemical and Biophysical Research Communications. 425(4):755-761

Shestopalov, I.A., Pitt, C.L., and Chen, J.K. (2012) Spatiotemporal resolution of the Ntla transcriptome in axial mesoderm development. Nature Chemical Biology. 8(3):270-276

Takesono, A., Moger, J., Faroq, S., Cartwright, E., Dawid, I.B., Wilson, S.W., and Kudoh, T. (2012) Solute carrier family 3 member 2 (Slc3a2) controls yolk syncytial layer (YSL) formation by regulating microtubule networks in the zebrafish embryo. Proceedings of the National Academy of Sciences of the United States of America. 109(9):3371-3376

Twigg, S.R., Lloyd, D., Jenkins, D., Elcioglu, N.E., Cooper, C.D., Al-Sannaa, N., Annagur, A., Gillessen-Kaesbach, G., Huning, I., Knight, S.J., Goodship, J.A., Keavney, B.D., Beales, P.L., Gileadi, O., McGowan, S.J., and Wilkie, A.O. (2012) Mutations in Multidomain Protein MEGF8 Identify a Carpenter Syndrome Subtype Associated with Defective Lateralization. American journal of human genetics. 91(5):897-905

Wang, X., Ren, J., Wang, Z., Yao, J., and Fei, J. (2012) NRSF/REST is required for gastrulation and neurogenesis during zebrafish development. Acta biochimica et biophysica Sinica. 44(5):385-393

Windner, S.E., Bird, N.C., Patterson, S.E., Doris, R.A., and Devoto, S.H. (2012) Fss/Tbx6 is required for central dermomyotome cell fate in zebrafish. Biology Open. 1(8):806-814

Yamazoe, S., Shestopalov, I.A., Provost, E., Leach, S.D., and Chen, J.K. (2012) Cyclic Caged Morpholinos: Conformationally Gated Probes of Embryonic Gene Function. Angewandte Chemie (International ed. in English). 51(28):6908-6911

Zhang, L., Huang, H., Zhou, F., Schimmel, J., Pardo, C.G., Zhang, T., Barakat, T.S., Sheppard, K.A., Mickanin, C., Porter, J.A., Vertegaal, A.C., van Dam, H., Gribnau, J., Lu, C.X., and Ten Dijke, P. (2012) RNF12 Controls Embryonic Stem Cell Fate and Morphogenesis in Zebrafish Embryos by Targeting Smad7 for Degradation. Molecular Cell. 46(5):650-661

Belting, H.G., Wendik, B., Lunde, K., Leichsenring, M., Mössner, R., Driever, W., and Onichtchouk, D. (2011) Pou5f1 contributes to dorsoventral patterning by positive regulation of vox and modulation of fgf8a expression. Developmental Biology. 356(2):323-36

Chung, M.I., Ma, A.C., Fung, T.K., and Leung, A.Y. (2011) Characterization of Sry-related HMG box group F genes in zebrafish hematopoiesis. Experimental hematology. 39(10):986-998.e5

Dal-Pra, S., Thisse, C., and Thisse, B. (2011) FoxA transcription factors are essential for the development of dorsal axial structures. Developmental Biology. 350(2):484-495

Finckbeiner, S., Ko, P.J., Carrington, B., Sood, R., Gross, K., Dolnick, B., Sufrin, J., and Liu, P. (2011) Transient Knockdown and Overexpression Reveal a Developmental Role for the Zebrafish enosf1b Gene. Cell & Bioscience. 1:32

Gibert, Y., Lattanzi, V.J., Zhen, A.W., Vedder, L., Brunet, F., Faasse, S.A., Babitt, J.L., Lin, H.Y., Hammerschmidt, M., and Fraenkel, P.G. (2011) BMP Signaling Modulates Hepcidin Expression in Zebrafish Embryos Independent of Hemojuvelin. PLoS One. 6(1):e14553

Groeneweg, J.W., White, Y.A., Kokel, D., Peterson, R.T., Zukerberg, L.R., Berin, I., Rueda, B.R., and Wood, A.W. (2011) cables1 is required for embryonic neural development: molecular, cellular, and behavioral evidence from the zebrafish. Molecular reproduction and development. 78(1):22-32

Hu, S., Wu, Z., Yan, Y., and Li, Y. (2011) Sox31 is involved in central nervous system anteroposterior regionalization through regulating the organizer activity in zebrafish. Acta biochimica et biophysica Sinica. 43(5):387-399

Huang, S., Ma, J., Liu, X., Zhang, Y., and Luo, L. (2011) Retinoic acid signaling sequentially controls visceral and heart laterality in Zebrafish. The Journal of biological chemistry. 286(32):28533-43

Labalette, C., Bouchoucha, Y.X., Wassef, M.A., Gongal, P.A., Le Men, J., Becker, T., Gilardi-Hebenstreit, P., and Charnay, P. (2011) Hindbrain patterning requires fine-tuning of early krox20 transcription by Sprouty 4. Development (Cambridge, England). 138(2):317-326

Li, D., Sun, H., Deng, W., Tao, D., Liu, Y., and Ma, Y. (2011) Zili Antagonizes Bmp Signaling to Regulate Dorsal-Ventral Patterning during Zebrafish Early Embryogenesis. Zoological science. 28(6):397-402

Li, Y., Li, Q., Long, Y., and Cui, Z. (2011) Lzts2 Regulates Embryonic Cell Movements and Dorsoventral Patterning through Interaction with and Export of Nuclear β-Catenin in Zebrafish. The Journal of biological chemistry. 286(52):45116-30

Liu, D., Wang, W.D., Melville, D.B., Cha, Y.I., Yin, Z., Issaeva, N., Knapik, E.W., and Yarbrough, W.G. (2011) Tumor suppressor Lzap regulates cell cycle progression, doming, and zebrafish epiboly. Developmental Dynamics : an official publication of the American Association of Anatomists. 240(6):1613-1625

Lou, X., Deshwar, A.R., Crump, J.G., and Scott, I.C. (2011) Smarcd3b and Gata5 promote a cardiac progenitor fate in the zebrafish embryo. Development (Cambridge, England). 138(15):3113-23

Mirbahai, L., Williams, T.D., Zhan, H., Gong, Z., and Chipman, J.K. (2011) Comprehensive profiling of zebrafish hepatic proximal promoter CpG island methylation and its modification during chemical carcinogenesis. BMC Genomics. 12:3

Narayanan, A., Thompson, S.A., Lee, J.J., and Lekven, A.C. (2011) A transgenic wnt8a:PAC reporter reveals biphasic regulation of vertebrate mesoderm development. Developmental Dynamics : an official publication of the American Association of Anatomists. 240(4):898-907

Row, R.H., Maître, J.L., Martin, B.L., Stockinger, P., Heisenberg, C.P., and Kimelman, D. (2011) Completion of the epithelial to mesenchymal transition in zebrafish mesoderm requires Spadetail. Developmental Biology. 354(1):102-110

Seebald, J.L., and Szeto, D.P. (2011) Zebrafish eve1 regulates the lateral and ventral fates of mesodermal progenitor cells at the onset of gastrulation. Developmental Biology. 349(1):78-89

Smith, K.A., Noël, E., Thurlings, I., Rehmann, H., Chocron, S., and Bakkers, J. (2011) Bmp and Nodal Independently Regulate lefty1 Expression to Maintain Unilateral Nodal Activity during Left-Right Axis Specification in Zebrafish. PLoS Genetics. 7(9):e1002289

Tsai, Y.J., Pan, H., Hung, C.M., Hou, P.T., Li, Y.C., Lee, Y.J., Shen, Y.T., Wu, T.T., and Li, C. (2011) The predominant protein arginine methyltransferase PRMT1 is critical for zebrafish convergence and extension during gastrulation. The FEBS journal. 278(6):905-917

Yu, J.A., Foley, F.C., Amack, J.D., and Turner, C.E. (2011) The Cell Adhesion-associated Protein Git2 Regulates Morphogenetic Movements during Zebrafish Embryonic Development. Developmental Biology. 349(2):225-237

Ablooglu, A.J., Tkachenko, E., Kang, J., and Shattil, S.J. (2010) Integrin alphaV is necessary for gastrulation movements that regulate vertebrate body asymmetry. Development (Cambridge, England). 137(20):3449-3458

Chang, L.L., and Kessler, D.S. (2010) Foxd3 is an Essential Nodal-Dependent Regulator of Zebrafish Dorsal Mesoderm Development. Developmental Biology. 342(1):39-50

Das, B.C., McCartin, K., Liu, T.C., Peterson, R.T., and Evans, T. (2010) A forward chemical screen in zebrafish identifies a retinoic acid derivative with receptor specificity. PLoS One. 5(4):e10004

Francescatto, L., Rothschild, S.C., Myers, A.L., and Tombes, R.M. (2010) The activation of membrane targeted CaMK-II in the zebrafish Kupffer's vesicle is required for left-right asymmetry. Development (Cambridge, England). 137(16):2753-2762

Harrington, M.J., Chalasani, K., and Brewster, R. (2010) Cellular mechanisms of posterior neural tube morphogenesis in the zebrafish. Developmental Dynamics : an official publication of the American Association of Anatomists. 239(3):747-762

Ishimatsu, K., Takamatsu, A., and Takeda, H. (2010) Emergence of traveling waves in the zebrafish segmentation clock. Development (Cambridge, England). 137(10):1595-1599

Martin, B.L., and Kimelman, D. (2010) Brachyury establishes the embryonic mesodermal progenitor niche. Genes & Development. 24(24):2778-2783

Ota, S., Tonou-Fujimori, N., Nakayama, Y., Ito, Y., Kawamura, A., and Yamasu, K. (2010) FGF receptor gene expression and its regulation by FGF signaling during early zebrafish development. Genesis (New York, N.Y. : 2000). 48(12):707-716

Rikin, A., and Evans, T. (2010) The tbx/bHLH transcription factor mga regulates gata4 and organogenesis. Developmental Dynamics : an official publication of the American Association of Anatomists. 239(2):535-547

Siddiqui, M., Sheikh, H., Tran, C., and Bruce, A.E. (2010) The tight junction component Claudin E is required for zebrafish epiboly. Developmental Dynamics : an official publication of the American Association of Anatomists. 239(2):715-722

Tay, H.G., Ng, Y.W., and Manser, E. (2010) A vertebrate-specific Chp-PAK-PIX pathway maintains E-cadherin at adherens junctions during zebrafish epiboly. PLoS One. 5(4):e10125

Wang, Y., Seebald, J.L., Szeto, D.P., and Irudayaraj, J. (2010) Biocompatibility and Biodistribution of Surface-Enhanced Raman Scattering Nanoprobes in Zebrafish Embryos: In vivo and Multiplex Imaging. ACS nano. 4(7):4039-4053

Xu, P.F., Zhu, K.Y., Jin, Y., Chen, Y., Sun, X.J., Deng, M., Chen, S.J., Chen, Z., and Liu, T.X. (2010) Setdb2 restricts dorsal organizer territory and regulates left-right asymmetry through suppressing fgf8 activity. Proceedings of the National Academy of Sciences of the United States of America. 107(6):2521-2526

Yao, S., Qian, M., Deng, S., Xie, L., Yang, H., Xiao, C., Zhang, T., Xu, H., Zhao, X., Wei, Y.Q., and Mo, X. (2010) KZP controls canonical WNT8 signaling to modulate dorsoventral patterning during zebrafish gastrulation. The Journal of biological chemistry. 285(53):42086-42096

Zhao, J., Sun, H., Deng, W., Li, D., Liu, Y., Lu, Y., Liu, Y., Tao, D., Zhang, S., and Ma, Y. (2010) Piwi-Like 2 Mediates Fibroblast Growth Factor Signaling during Gastrulation of Zebrafish Embryo. The Tohoku journal of experimental medicine. 222(1):63-68

Carreira-Barbosa, F., Kajita, M., Morel, V., Wada, H., Okamoto, H., Martinez Arias, A., Fujita, Y., Wilson, S.W., and Tada, M. (2009) Flamingo regulates epiboly and convergence/extension movements through cell cohesive and signalling functions during zebrafish gastrulation. Development (Cambridge, England). 136(3):383-392

Dixon Fox, M., and Bruce, A.E. (2009) Short- and long-range functions of Goosecoid in zebrafish axis formation are independent of Chordin, Noggin 1 and Follistatin-like 1b. Development (Cambridge, England). 136(10):1675-1685

Ferrante, M.I., Romio, L., Castro, S., Collins, J.E., Goulding, D.A., Stemple, D.L., Woolf, A.S., and Wilson, S.W. (2009) Convergent Extension Movements and Ciliary Function are Mediated by ofd1, A Zebrafish Orthologue of the Human Oral-Facial-Digital Type 1 Syndrome Gene. Human molecular genetics. 18(2):289-303

Ghosh, B., Benyumov, A.O., Ghosh, P., Jia, Y., Avdulov, S., Dahlberg, P.S., Peterson, M., Smith, K., Polunovsky, V.A., Bitterman, P.B., and Wagner, C.R. (2009) Non-Toxic Chemical Interdiction of the Epithelial-to-Mesenchymal Transition by Targeting Cap-dependent Translation. ACS Chemical Biology. 4(5):367-377

Hatler, J.M., Essner, J.J., and Johnson, R.G. (2009) A gap junction connexin is required in the vertebrate left-right organizer. Developmental Biology. 336(2):183-191

Holloway, B.A., Gomez de la Torre Canny, S., Ye, Y., Slusarski, D.C., Freisinger, C.M., Dosch, R., Chou, M.M., Wagner, D.S., and Mullins, M.C. (2009) A novel role for MAPKAPK2 in morphogenesis during zebrafish development. PLoS Genetics. 5(3):e1000413

Lin, F., Chen, S., Sepich, D.S., Panizzi, J.R., Clendenon, S.G., Marrs, J.A., Hamm, H.E., and Solnica-Krezel, L. (2009) Galpha12/13 regulate epiboly by inhibiting E-cadherin activity and modulating the actin cytoskeleton. The Journal of cell biology. 184(6):909-921

Liu, J.X., Hu, B., Wang, Y., Gui, J.F., and Xiao, W. (2009) Zebrafish eaf1 and eaf2/u19 mediate effective convergence and extension movements through the maintenance of wnt11 and wnt5 expression. The Journal of biological chemistry. 284(24):16679-16692

Liu, X., Huang, S., Ma, J., Li, C., Zhang, Y., and Luo, L. (2009) NF-kappaB and Snail1a coordinate the cell cycle with gastrulation. The Journal of cell biology. 184(6):805-815

Meani, N., Pezzimenti, F., Deflorian, G., Mione, M., and Alcalay, M. (2009) The tumor suppressor PRDM5 regulates Wnt signaling at early stages of zebrafish development. PLoS One. 4(1):e4273

Morley, R.H., Lachani, K., Keefe, D., Gilchrist, M.J., Flicek, P., Smith, J.C., and Wardle, F.C. (2009) A gene regulatory network directed by zebrafish No tail accounts for its roles in mesoderm formation. Proceedings of the National Academy of Sciences of the United States of America. 106(10):3829-3834

Ochi, H., and Westerfield, M. (2009) Lbx2 regulates formation of myofibrils. BMC Developmental Biology. 9:13

Ota, S., Tonou-Fujimori, N., and Yamasu, K. (2009) The roles of the FGF signal in zebrafish embryos analyzed using constitutive activation and dominant-negative suppression of different FGF receptors. Mechanisms of Development. 126(1-2):1-17

Parkin, C.A., Allen, C.E., and Ingham, P.W. (2009) Hedgehog signalling is required for cloacal development in the zebrafish embryo. The International journal of developmental biology. 53(1):45-57

Regan, J.C., Concha, M.L., Roussigne, M., Russell, C., and Wilson, S.W. (2009) An Fgf8-dependent bistable cell migratory event establishes CNS asymmetry. Neuron. 61(1):27-34

Row, R., and Kimelman, D. (2009) Bmp inhibition is necessary for post-gastrulation patterning and morphogenesis of the zebrafish tailbud. Developmental Biology. 329(1):55-63

Sanhueza, D., Montoya, A., Sierralta, J., and Kukuljan, M. (2009) Expression of voltage-activated calcium channels in the early zebrafish embryo. Zygote (Cambridge, England). 17(2):131-135

Siekmann, A.F., Standley, C., Fogarty, K.E., Wolfe, S.A., and Lawson, N.D. (2009) Chemokine signaling guides regional patterning of the first embryonic artery. Genes & Development. 23(19):2272-2277

Tiso, N., Filippi, A., Benato, F., Negrisolo, E., Modena, N., Vaccari, E., Driever, W., and Argenton, F. (2009) Differential expression and regulation of olig genes in zebrafish. The Journal of comparative neurology. 515(3):378-396

Webster, D.M., Teo, C.F., Sun, Y., Wloga, D., Gay, S., Klonowski, K.D., Wells, L., and Dougan, S.T. (2009) O-GlcNAc modifications regulate cell survival and epiboly during zebrafish development. BMC Developmental Biology. 9:28

Zhang, Y., Li, X., Qi, J., Wang, J., Liu, X., Zhang, H., Lin, S.C., and Meng, A. (2009) Rock2 controls TGFβ signaling and inhibits mesoderm induction in zebrafish embryos. Journal of Cell Science. 122(Pt 13):2197-2207

Aamar, E., and Dawid, I.B. (2008) Protocadherin-18a has a role in cell adhesion, behavior and migration in zebrafish development. Developmental Biology. 318(2):335-346

Coyle, R.C., Latimer, A., and Jessen, J.R. (2008) Membrane-type 1 matrix metalloproteinase regulates cell migration during zebrafish gastrulation: Evidence for an interaction with non-canonical Wnt signaling. Experimental cell research. 314(10):2150-2162

Ding, Y., Xi, Y., Chen, T., Wang, J.Y., Tao, D.L., Wu, Z.L., Li, Y.P., Li, C., Zeng, R., and Li, L. (2008) Caprin-2 enhances canonical Wnt signaling through regulating LRP5/6 phosphorylation. The Journal of cell biology. 182(5):865-872

Esterberg, R., Delalande, J.M., and Fritz, A. (2008) Tailbud-derived Bmp4 drives proliferation and inhibits maturation of zebrafish chordamesoderm. Development (Cambridge, England). 135(23):3891-3901

Gongal, P.A., and Waskiewicz, A.J. (2008) Zebrafish model of Holoprosencephaly demonstrates a key role for TGIF in regulating retinoic acid metabolism. Human molecular genetics. 17(4):525-538

Hong, S.K., Tsang, M., and Dawid, I.B. (2008) The Mych Gene Is Required for Neural Crest Survival during Zebrafish Development. PLoS One. 3(4):e2029

Kai, M., Heisenberg, C.P., and Tada, M. (2008) Sphingosine-1-phosphate receptors regulate individual cell behaviours underlying the directed migration of prechordal plate progenitor cells during zebrafish gastrulation. Development (Cambridge, England). 135(18):3043-3051

Kishimoto, N., Cao, Y., Park, A., and Sun, Z. (2008) Cystic kidney gene seahorse regulates cilia-mediated processes and Wnt pathways. Developmental Cell. 14(6):954-961

Kreiling, J.A., Balantac, Z.L., Crawford, A.R., Ren, Y., Toure, J., Zchut, S., Kochilas, L., and Creton, R. (2008) Suppression of the endoplasmic reticulum calcium pump during zebrafish gastrulation affects left-right asymmetry of the heart and brain. Mechanisms of Development. 125(5-6):396-410

Krens, S.F., He, S., Lamers, G.E., Meijer, A.H., Bakkers, J., Schmidt, T., Spaink, H.P., and Snaar-Jagalska, B.E. (2008) Distinct functions for ERK1 and ERK2 in cell migration processes during zebrafish gastrulation. Developmental Biology. 319(2):370-383

Lai, S.L., Chan, T.H., Lin, M.J., Huang, W.P., Lou, S.W., and Lee, S.J. (2008) Diaphanous-related formin 2 and profilin I are required for gastrulation cell movements. PLoS One. 3(10):e3439

Martin, B.L., and Kimelman, D. (2008) Regulation of canonical Wnt signaling by Brachyury is essential for posterior mesoderm formation. Developmental Cell. 15(1):121-133

Monteiro, R., van Dinther, M., Bakkers, J., Wilkinson, R., Patient, R., Ten Dijke, P., and Mummery, C. (2008) Two novel type II receptors mediate BMP signalling and are required to establish left-right asymmetry in zebrafish. Developmental Biology. 315(1):55-71

Mudumana, S.P., Hentschel, D., Liu, Y., Vasilyev, A., and Drummond, I.A. (2008) odd skipped related1 reveals a novel role for endoderm in regulating kidney versus vascular cell fate. Development (Cambridge, England). 135(20):3355-3367

Nicoli, S., Tobia, C., Gualandi, L., De Sena, G., and Presta, M. (2008) Calcitonin receptor-like receptor guides arterial differentiation in Zebrafish. Blood. 111(10):4965-4972

Pei, D.S., Sun, Y.H., Long, Y., and Zhu, Z.Y. (2008) Inhibition of no tail (ntl) gene expression in zebrafish by external guide sequence (EGS) technique. Molecular biology reports. 35(2):139-143

Sachidanandan, C., Yeh, J.R., Peterson, Q.P., and Peterson, R.T. (2008) Identification of a novel retinoid by small molecule screening with zebrafish embryos. PLoS One. 3(4):e1947

Schneider, I., Houston, D.W., Rebagliati, M.R., and Slusarski, D.C. (2008) Calcium fluxes in dorsal forerunner cells antagonize {beta}-catenin and alter left-right patterning. Development (Cambridge, England). 135(1):75-84

Su, J., Zhu, Z., Wang, Y., Xiong, F., and Zou, J. (2008) The Cytomegalovirus Promoter-Driven Short Hairpin RNA Constructs Mediate Effective RNA Interference in Zebrafish In Vivo. Marine biotechnology (New York, N.Y.). 10(3):262-269

Tian, J., Andrée, B., Jones, C.M., and Sampath, K. (2008) The pro-domain of the zebrafish Nodal-related protein Cyclops regulates its signaling activities. Development (Cambridge, England). 135(15):2649-2658

Waxman, J.S., Keegan, B.R., Roberts, R.W., Poss, K.D., and Yelon, D. (2008) Hoxb5b acts downstream of retinoic Acid signaling in the forelimb field to restrict heart field potential in zebrafish. Developmental Cell. 15(6):923-934

Amack, J.D., Wang, X., and Yost, H.J. (2007) Two T-box genes play independent and cooperative roles to regulate morphogenesis of ciliated Kupffer's vesicle in zebrafish. Developmental Biology. 310(2):196-210

Besser, J., Leito, J.T., van der Meer, D.L., and Bagowski, C.P. (2007) Tip-1 induces filopodia growth and is important for gastrulation movements during zebrafish development. Development, growth & differentiation. 49(3):205-214

Caneparo, L., Huang, Y.L., Staudt, N., Tada, M., Ahrendt, R., Kazanskaya, O., Niehrs, C., and Houart, C. (2007) Dickkopf-1 regulates gastrulation movements by coordinated modulation of Wnt/betacatenin and Wnt/PCP activities, through interaction with the Dally-like homolog Knypek. Genes & Development. 21(4):465-480

Deniziak, M., Thisse, C., Rederstorff, M., Hindelang, C., Thisse, B., and Lescure, A. (2007) Loss of selenoprotein N function causes disruption of muscle architecture in the zebrafish embryo. Experimental cell research. 313(1):156-167

Fan, X., Hagos, E.G., Xu, B., Sias, C., Kawakami, K., Burdine, R.D., and Dougan, S.T. (2007) Nodal signals mediate interactions between the extra-embryonic and embryonic tissues in zebrafish. Developmental Biology. 310(2):363-378

Gourronc, F., Ahmad, N., Nedza, N., Eggleston, T., and Rebagliati, M. (2007) Nodal activity around Kupffer's vesicle depends on the T-box transcription factors notail and spadetail and on notch signaling. Developmental Dynamics : an official publication of the American Association of Anatomists. 236(8):2131-2146

Harrington, M.J., Hong, E., Fasanmi, O., and Brewster, R. (2007) Cadherin-mediated adhesion regulates posterior body formation. BMC Developmental Biology. 7(1):130

Holtzinger, A., and Evans, T. (2007) Gata5 and Gata6 are functionally redundant in zebrafish for specification of cardiomyocytes. Developmental Biology. 312(2):613-622

Jopling, C., and den Hertog, J. (2007) Essential role for Csk upstream of Fyn and Yes in zebrafish gastrulation. Mechanisms of Development. 124(2):129-136

Kida, Y.S., Sato, T., Miyasaka, K.Y., Suto, A., and Ogura, T. (2007) Daam1 regulates the endocytosis of EphB during the convergent extension of the zebrafish notochord. Proceedings of the National Academy of Sciences of the United States of America. 104(16):6708-6713

Lin, X., Rinaldo, L., Fazly, A.F., and Xu, X. (2007) Depletion of Med10 enhances Wnt and suppresses Nodal signaling during zebrafish embryogenesis. Developmental Biology. 303(2):536-548

Londin, E.R., Mentzer, L., and Sirotkin, H.I. (2007) Churchill regulates cell movement and mesoderm specification by repressing Nodal signaling. BMC Developmental Biology. 7(1):120

McReynolds, L.J., Gupta, S., Figueroa, M.E., Mullins, M.C., and Evans, T. (2007) Smad1 and Smad5 differentially regulate embryonic hematopoiesis. Blood. 110(12):3881-3890

Muyskens, J.B., and Kimmel, C.B. (2007) Tbx16 cooperates with Wnt11 in assembling the zebrafish organizer. Mechanisms of Development. 124(1):35-42

Ott, E.B., Sakalis, P.A., Marques, I.J., and Bagowski, C.P. (2007) Characterization of the enigma family in zebrafish. Developmental Dynamics : an official publication of the American Association of Anatomists. 236(11):3144-3154

Plaster, N., Sonntag, C., Schilling, T.F., and Hammerschmidt, M. (2007) REREa/Atrophin-2 interacts with histone deacetylase and Fgf8 signaling to regulate multiple processes of zebrafish development. Developmental Dynamics : an official publication of the American Association of Anatomists. 236(7):1891-1904

Shestopalov, I.A., Sinha, S., and Chen, J.K. (2007) Light-controlled gene silencing in zebrafish embryos. Nature Chemical Biology. 3(10):650-651

Songhet, P., Adzic, D., Reibe, S., and Rohr, K.B. (2007) fgf1 is required for normal differentiation of erythrocytes in zebrafish primitive hematopoiesis. Developmental Dynamics : an official publication of the American Association of Anatomists. 236(3):633-643

Tsai, I.C., Amack, J.D., Gao, Z.H., Band, V., Yost, H.J., and Virshup, D.M. (2007) A Wnt-CKIε-Rap1 Pathway Regulates Gastrulation by Modulating SIPA1L1, a Rap GTPase Activating Protein. Developmental Cell. 12(3):335-347

Van Raay, T.J., Coffey, R.J., and Solnica-Krezel, L. (2007) Zebrafish Naked1 and Naked2 antagonize both canonical and non-canonical Wnt signaling. Developmental Biology. 309(2):151-168

Zeng, X.X., Wilm, T.P., Sepich, D.S., and Solnica-Krezel, L. (2007) Apelin and Its Receptor Control Heart Field Formation during Zebrafish Gastrulation. Developmental Cell. 12(3):391-402

Cha, Y.I., Kim, S.H., Sepich, D., Buchanan, F.G., Solnica-Krezel, L., and Dubois, R.N. (2006) Cyclooxygenase-1-derived PGE2 promotes cell motility via the G-protein-coupled EP4 receptor during vertebrate gastrulation. Genes & Development. 20(1):77-86

Gibert, Y., Gajewski, A., Meyer, A., and Begemann, G. (2006) Induction and prepatterning of the zebrafish pectoral fin bud requires axial retinoic acid signaling. Development (Cambridge, England). 133(14):2649-2659

Ho, D.M., Chan, J., Bayliss, P., and Whitman, M. (2006) Inhibitor-resistant type I receptors reveal specific requirements for TGF-beta signaling in vivo. Developmental Biology. 295(2):730-742

Jing, X.H., Zhou, S.M., Wang, W.Q., and Chen, Y. (2006) Mechanisms underlying long- and short-range nodal signaling in Zebrafish. Mechanisms of Development. 123(5):388-394

Latimer, A.J., and Appel, B. (2006) Notch signaling regulates midline cell specification and proliferation in zebrafish. Developmental Biology. 298(2):392-402

Link, V., Carvalho, L., Castanon, I., Stockinger, P., Shevchenko, A., and Heisenberg, C.P. (2006) Identification of regulators of germ layer morphogenesis using proteomics in zebrafish. Journal of Cell Science. 119(10):2073-2083

Machingo, Q.J., Fritz, A., and Shur, B.D. (2006) A beta1,4-galactosyltransferase is required for convergent extension movements in zebrafish. Developmental Biology. 297(2):471-482

Mizoguchi, T., Izawa, T., Kuroiwa, A., and Kikuchi, Y. (2006) Fgf signaling negatively regulates Nodal-dependent endoderm induction in zebrafish. Developmental Biology. 300(2):612-622

Okuda, Y., Yoda, H., Uchikawa, M., Furutani-Seiki, M., Takeda, H., Kondoh, H., Kamachi, Y. (2006) Comparative genomic and expression analysis of group B1 sox genes in zebrafish indicates their diversification during vertebrate evolution. Developmental Dynamics : an official publication of the American Association of Anatomists. 235(3):811-825

Ramasamy, S., Wang, H., Quach, H.N., and Sampath, K. (2006) Zebrafish Staufen1 and Staufen2 are required for the survival and migration of primordial germ cells. Developmental Biology. 292(2):393-406

Schild-Prufert, K., Giegerich, M., Schafer, M., Winkler, C., and Krohne, G. (2006) Structural and functional characterization of the zebrafish lamin B receptor. European journal of cell biology. 85(8):813-824

Szeto, D.P., and Kimelman, D. (2006) The regulation of mesodermal progenitor cell commitment to somitogenesis subdivides the zebrafish body musculature into distinct domains. Genes & Development. 20(14):1923-1932

Tallafuss, A., Hale, L.A., Yan, Y.L., Dudley, L., Eisen, J.S., and Postlethwait, J.H. (2006) Characterization of retinoid-X receptor genes rxra, rxrba, rxrbb and rxrg during zebrafish development. Gene expression patterns : GEP. 6(5):556-565

Tilton, F., La Du, J.K., Vue, M., Alzarban, N., and Tanguay, R.L. (2006) Dithiocarbamates have a common toxic effect on zebrafish body axis formation. Toxicology and applied pharmacology. 216(1):55-68

Witzel, S., Zimyanin, V., Carreira-Barbosa, F., Tada, M., and Heisenberg, C.P. (2006) Wnt11 controls cell contact persistence by local accumulation of Frizzled 7 at the plasma membrane. The Journal of cell biology. 175(5):791-802

Zhu, S., Liu, L., Korzh, V., Gong, Z., and Low, B.C. (2006) RhoA acts downstream of Wnt5 and Wnt11 to regulate convergence and extension movements by involving effectors Rho Kinase and Diaphanous: Use of zebrafish as an in vivo model for GTPase signaling. Cellular Signalling. 18(3):359-372

Albertson, R.C., and Yelick, P.C. (2005) Roles for fgf8 signaling in left-right patterning of the visceral organs and craniofacial skeleton. Developmental Biology. 283(2):310-321

Bisgrove, B.W., Snarr, B.S., Emrazian, A., and Yost, H.J. (2005) Polaris and Polycystin-2 in dorsal forerunner cells and Kupffer's vesicle are required for specification of the zebrafish left-right axis. Developmental Biology. 287(2):274-288

Challa, A.K., McWhorter, M.L., Wang, C., Seeger, M.A., and Beattie, C.E. (2005) Robo3 isoforms have distinct roles during zebrafish development. Mechanisms of Development. 122(10):1073-1086

Essner, J.J., Amack, J.D., Nyholm, M.K., Harris, E.B., and Yost, H.J. (2005) Kupffer's vesicle is a ciliated organ of asymmetry in the zebrafish embryo that initiates left-right development of the brain, heart and gut. Development (Cambridge, England). 132(6):1247-1260

Honjo, Y., and Eisen, J.S. (2005) Slow muscle regulates the pattern of trunk neural crest migration in zebrafish. Development (Cambridge, England). 132(20):4461-4470

Kawamura, A., Koshida, S., Hijikata, H., Sakaguchi, T., Kondoh, H., and Takada, S. (2005) Zebrafish Hairy/Enhancer of split protein links FGF signaling to cyclic gene expression in the periodic segmentation of somites. Genes & Development. 19(10):1156-1161

Latimer, A.J., Shin, J., and Appel, B. (2005) her9 promotes floor plate development in zebrafish. Developmental Dynamics : an official publication of the American Association of Anatomists. 232(4):1098-1104

Liu, W.Y., Wang, Y., Sun, Y.H., Wang, Y., Wang, Y.P., Chen, S.P., and Zhu, Z.Y. (2005) Efficient RNA interference in zebrafish embryos using siRNA synthesized with SP6 RNA polymerase. Development, growth & differentiation. 47(5):323-331

Lyman Gingerich, J., Westfall, T.A., Slusarski, D.C., and Pelegri, F. (2005) hecate, a zebrafish maternal effect gene, affects dorsal organizer induction and intracellular calcium transient frequency. Developmental Biology. 286(2):427-439

Maves, L., and Kimmel, C.B. (2005) Dynamic and sequential patterning of the zebrafish posterior hindbrain by retinoic acid. Developmental Biology. 285(2):593-605

Montero, J.A., Carvalho, L., Wilsch-Bräuninger, M., Kilian, B., Mustafa, C., and Heisenberg, C.P. (2005) Shield formation at the onset of zebrafish gastrulation. Development (Cambridge, England). 132(6):1187-1198

Nowak, M., Köster, C., and Hammerschmidt, M. (2005) Perp is required for tissue-specific cell survival during zebrafish development. Cell death and differentiation. 12(1):52-64

Ramel, M.C., Buckles, G.R., Baker, K.D., and Lekven, A.C. (2005) WNT8 and BMP2B co-regulate non-axial mesoderm patterning during zebrafish gastrulation. Developmental Biology. 287(2):237-248

Sarmah, B., Latimer, A.J., Appel, B., and Wente, S.R. (2005) Inositol polyphosphates regulate zebrafish left-right asymmetry. Developmental Cell. 9(1):133-145

Saúde, L., Lourenço, R., Gonçalves, A., and Palmeirim, I. (2005) terra is a left-right asymmetry gene required for left-right synchronization of the segmentation clock. Nature cell biology. 7(9):918-920

Sumanas, S., Zhang, B., Dai, R., and Lin, S. (2005) 15-Zinc finger protein Bloody Fingers is required for zebrafish morphogenetic movements during neurulation. Developmental Biology. 283(1):85-96

Ulrich, F., Krieg, M., Schotz, E.M., Link, V., Castanon, I., Schnabel, V., Taubenberger, A., Mueller, D., Puech, PH., and Heisenberg, C.P. (2005) Wnt11 Functions in Gastrulation by Controlling Cell Cohesion through Rab5c and E-Cadherin. Developmental Cell. 9(4):555-564

Woods, I.G., Wilson, C., Friedlander, B., Chang, P., Reyes, D.K., Nix, R., Kelly, P.D., Chu, F., Postlethwait, J.H., and Talbot, W.S. (2005) The zebrafish gene map defines ancestral vertebrate chromosomes. Genome research. 15(9):1307-1314

Zhao, C., Qi, J., and Meng, A. (2005) Characterization and expression pattern of two zebrafish atf7 genes. Developmental Dynamics : an official publication of the American Association of Anatomists. 233(3):1157-1162

Argenton, F., Giudici, S., Deflorian, G., Cimbro, S., Cotelli, F., and Beltrame, M. (2004) Ectopic expression and knockdown of a zebrafish sox21 reveal its role as a transcriptional repressor in early development. Mechanisms of Development. 121(2):131-142

Bakkers, J., Kramer, C., Pothof, J., Quaedvlieg, N.E., Spaink, H.P., and Hammerschmidt, M. (2004) Has2 is required upstream of Rac1 to govern dorsal migration of lateral cells during zebrafish gastrulation. Development (Cambridge, England). 131(3):525-537

Correa, R.G., Tergaonkar, V., Ng, J.K., Dubova, I., Izpisúa Belmonte, J.C., and Verma, I.M. (2004) Characterization of NF-kappa B/I kappa B proteins in zebra fish and their involvement in notochord development. Molecular and cellular biology. 24(12):5257-5268

Dosch, R., Wagner, D.S., Mintzer, K.A., Runke, G., Wiemelt, A.P., and Mullins, M.C. (2004) Maternal Control of Vertebrate Development before the Midblastula Transition; Mutants from the Zebrafish I. Developmental Cell. 6(6):771-780

Glavic, A., Maris Honoré, S., Gloria Feijóo, C., Bastidas, F., Allende, M.L., and Mayor, R. (2004) Role of BMP signaling and the homeoprotein iroquois in the specification of the cranial placodal field. Developmental Biology. 272(1):89-103

Kaji, T., and Artinger, K.B. (2004) dlx3b and dlx4b function in the development of Rohon-Beard sensory neurons and trigeminal placode in the zebrafish neurula. Developmental Biology. 276(2):523-540

Knowlton, M.N. and Kelly, G.M. (2004) Zebrafish Mir Antagonizes Frizzled 7-Induced Gastrulation Defects. Zebrafish. 1(2):133-144

Lewis, K.E., and Eisen, J.S. (2004) Paraxial mesoderm specifies zebrafish primary motoneuron subtype identity. Development (Cambridge, England). 131(4):891-902

Marlow, F., Gonzalez, E.M., Yin, C., Rojo, C., and Solnica-Krezel, L. (2004) No tail co-operates with non-canonical Wnt signaling to regulate posterior body morphogenesis in zebrafish. Development (Cambridge, England). 131(1):203-216

Matsuda, N., and Mishina, M. (2004) Identification of chaperonin CCT{gamma} subunit as a determinant of retinotectal development by whole-genome subtraction cloning from zebrafish no tectal neuron mutant. Development (Cambridge, England). 131(9):1913-1925

Nojima, H., Shimizu, T., Kim, C.H., Yabe, T., Bae, Y.K., Muraoka, O., Hirata, T., Chitnis, A., Hirano, T., and Hibi, M. (2004) Genetic evidence for involvement of maternally derived Wnt canonical signaling in dorsal determination in zebrafish. Mechanisms of Development. 121(4):371-386

Ramel, M.C., Buckles, G.R., and Lekven, A.C. (2004) Conservation of structure and functional divergence of duplicated Wnt8s in pufferfish. Developmental Dynamics : an official publication of the American Association of Anatomists. 231(2):441-448

Szeto, D.P., and Kimelman, D. (2004) Combinatorial gene regulation by Bmp and Wnt in zebrafish posterior mesoderm formation. Development (Cambridge, England). 131(15):3751-3760

Zhang, C., Basta, T., Hernandez-Lagunas, L., Simpson, P., Stemple, D.L., Artinger, K.B., and Klymkowsky, M.W. (2004) Repression of nodal expression by maternal B1-type SOXs regulates germ layer formation in Xenopus and zebrafish. Developmental Biology. 273(1):23-37

Appel, B., Marasco, P., McClung, L.E., and Latimer, A.J. (2003) lunatic fringe regulates delta-notch induction of hypochord in zebrafish. Developmental Dynamics : an official publication of the American Association of Anatomists. 228(2):281-286

Carreira-Barbosa, F., Concha, M.L., Takeuchi, M., Ueno, N., Wilson, S.W., and Tada, M. (2003) Prickle 1 regulates cell movements during gastrulation and neuronal migration in zebrafish. Development (Cambridge, England). 130(17):4037-4046

Dougan, S.T., Warga, R.M., Kane, D.A., Schier, A.F., and Talbot, W.S. (2003) The role of the zebrafish nodal-related genes squint and cyclops in patterning of mesendoderm. Development (Cambridge, England). 130(9):1837-1851

Gamse, J.T., Thisse, C., Thisse, B., and Halpern, M.E. (2003) The parapineal mediates left-right asymmetry in the zebrafish diencephalon. Development (Cambridge, England). 130:1059-1068

Glickman, N.S., Kimmel, C.B., Jones, M.A., and Adams, R.J. (2003) Shaping the zebrafish notochord. Development (Cambridge, England). 130(5):873-887

Hammond, K.L., Loynes, H.E., Folarin, A.A., Smith, J., and Whitfield, T.T. (2003) Hedgehog signalling is required for correct anteroposterior patterning of the zebrafish otic vesicle. Development (Cambridge, England). 130(7):1403-1417

Kilian, B., Mansukoski, H., Barbosa, F.C., Ulrich, F., Tada, M., and Heisenberg, C.P. (2003) The role of Ppt/Wnt5 in regulating cell shape and movement during zebrafish gastrulation. Mechanisms of Development. 120(4):467-476

Lewis, K.E. and Eisen, J.S. (2003) From cells to circuits: development of the zebrafish spinal cord. Progress in neurobiology. 69(6):419-449

Long, S., Ahmad, N., and Rebagliati, M. (2003) The zebrafish nodal-related gene southpaw is required for visceral and diencephalic left-right asymmetry. Development (Cambridge, England). 130(11):2303-2316

North, T.E. and Zon, L.I. (2003) Modeling human hematopoietic and cardiovascular diseases in zebrafish. Developmental Dynamics : an official publication of the American Association of Anatomists. 228(3):568-583

Solnica-Krezel, L. (2003) Vertebrate development: taming the nodal waves. Current biology : CB. 13(1):R7-R9

Warga, R.M. and Kane, D.A. (2003) One-eyed pinhead regulates cell motility independent of Squint/Cyclops signaling. Developmental Biology. 261(2):391-411

Yamakoshi, K. and Shimoda, N. (2003) PCR-based cloning of an intronless zebrafish no tail gene. Biochemical and Biophysical Research Communications. 306(2):598-602

Zhao, J., Cao, Y., Zhao, C., Postlethwait, J., and Meng, A. (2003) An SP1-like transcription factor Spr2 acts downstream of Fgf signaling to mediate mesoderm induction. The EMBO journal. 22(22):6078-6088

Bakkers, J., Hild, M., Kramer, C., Furutani-Seiki, M., and Hammerschmidt, M. (2002) Zebrafish Delta Np63 is a direct target of Bmp signaling and encodes a transcriptional repressor blocking neural specification in the ventral ectoderm. Developmental Cell. 2(5):617-627

Chen, Y. and Schier, A.F. (2002) Lefty proteins are long-range inhibitors of squint-mediated nodal signaling. Current biology : CB. 12(24):2124-2128

Etheridge, L., diIorio, P. and Sagerström, C.G. (2002) A zebrafish unc-45 related gene expressed during muscle development. Developmental Dynamics : an official publication of the American Association of Anatomists. 224(4):457-460

Griffin, K.J.P. and Kimelman, D. (2002) One-Eyed Pinhead and Spadetail are essential for heart and somite formation. Nature cell biology. 4(10):821-825

Kim, S.-H., Shin, J., Park, H.-C., Yeo, S.-Y., Hong, S.-K., Han, S., Rhee, M., Kim, C.-H., Chitnis, A.B., and Huh, T.-L. (2002) Specification of an anterior neuroectoderm patterning by Frizzled8a-mediated Wnt8b signalling during late gastrulation in zebrafish. Development (Cambridge, England). 129(19):4443-4455

Latimer, A.J., Dong, X., Markov, Y., and Appel, B. (2002) Delta-Notch signaling induces hypochord development in zebrafish. Development (Cambridge, England). 129(11):2555-2563

Marlow, F., Topczewski, J., Sepich, D., and Solnica-Krezel, L. (2002) Zebrafish rho kinase 2 acts downstream of wnt11 to mediate cell polarity and effective convergence and extension movements. Current biology : CB. 12(11):876-884

Nikaido, M., Kawakami, A., Sawada, A., Furutani-Seiki, M., Takeda, H., and Araki, K. (2002) Tbx24, encoding a T-box protein, is mutated in the zebrafish somite-segmentation mutant fused somites. Nature Genetics. 31(2):195-199

Pogoda, H.M. and Meyer, D. (2002) Zebrafish smad7 is regulated by Smad3 and BMP signals. Developmental Dynamics : an official publication of the American Association of Anatomists. 224(3):334-349

Reim, G. and Brand, M. (2002) spiel-ohne-grenzen/pou2 mediates regional competence to respond to Fgf8 during zebrafish early neural development. Development (Cambridge, England). 129(4):917-933

Weidinger, G., Wolke, U., Köprunner, M., Thisse, C., Thisse, B. and Raz, E. (2002) Regulation of zebrafish primordial germ cell migration by attraction towards an intermediate target. Development (Cambridge, England). 129:25-36

Begemann, G., Schilling, T.F., Rauch, G.J., Geisler, R., and Ingham, P.W. (2001) The zebrafish neckless mutation reveals a requirement for raldh2 in mesodermal signals that pattern the hindbrain. Development (Cambridge, England). 128(16):3081-3094

Chen, Y. and Schier, A.F. (2001) The zebrafish Nodal signal Squint functions as a morphogen. Nature. 411(6837):607-610

Dickmeis, T., Rastegar, S., Aanstad, P., Clark, M., Fischer, N., Korzh, V., and Strähle, U. (2001) Expression of the anti-dorsalizing morphogenetic protein gene in the zebrafish embryo. Development genes and evolution. 211(11):568-572

Erter, C.E., Wilm, T.P., Basler, N., Wright, C.V., and Solnica-Krezel, L. (2001) Wnt8 is required in lateral mesendodermal precursors for neural posteriorization in vivo. Development (Cambridge, England). 128(18):3571-3583

Feldman, B. and Stemple, D.L. (2001) Morpholino phenocopies of sqt, oep, and ntl mutations. Genesis (New York, N.Y. : 2000). 30(3):175-177

Kawahara, A. and Dawid, I.B. (2001) Critical role of biklf in erythroid cell differentiation in zebrafish. Current biology : CB. 11(17):1353-1357

Lekven, A.C., Thorpe, C.J., Waxman, J.S., and Moon, R.T. (2001) Zebrafish wnt8 encodes two wnt8 proteins on a bicistronic transcript and is required for mesoderm and neurectoderm patterning. Developmental Cell. 1(1):103-114

Payne, T.L., Postlethwait, J.H., and Yelick, P.C. (2001) Functional characterization and genetic mapping of alk8. Mechanisms of Development. 100(2):275-289

Sagerström, C.G., Kao, B.A., Lane, M.E., and Sive, H. (2001) Isolation and characterization of posteriorly restricted genes in the zebrafish gastrula. Developmental Dynamics : an official publication of the American Association of Anatomists. 220(4):402-408

Sumanas, S., Kim, H.J., Hermanson, S., and Ekker, S.C. (2001) Zebrafish frizzled-2 morphant displays defects in body axis elongation. Genesis (New York, N.Y. : 2000). 30(3):114-118

Yeo, S.Y., Little, M.H., Yamada, T., Miyashita, T., Halloran, M.C., Kuwada, J.Y., Huh, T.L., and Okamoto, H. (2001) Overexpression of a slit homologue impairs convergent extension of the mesoderm and causes cyclopia in embryonic zebrafish. Developmental Biology. 230(1):1-17

Bisgrove, B.W., Essner, J.J., Yost, H.J. (2000) Multiple pathways in the midline regulate concordant brain, heart and gut left-right asymmetry. Development (Cambridge, England). 127(16):3567-3579

Chin, A.J., Tsang, M., and Weinberg, E.S. (2000) Heart and gut chiralities are controlled independently from initial heart position in the developing zebrafish. Developmental Biology. 227(2):403-421

Essner, J.J., Branford, W.W., Zhang, J., and Yost, H.J. (2000) Mesendoderm and left-right brain, heart and gut development are differentially regulated by pitx2 isoforms. Development (Cambridge, England). 127(5):1081-1093

Griffin, K.J., Stoller, J., Gibson, M., Chen, S., Yelon, D., Stainier, D.Y., and Kimelman, D. (2000) A conserved role for H15-related T-Box transcription factors in zebrafish and Drosophila heart formation. Developmental Biology. 218(2):235-247

Kaufman, C.D., Martinez-Rodriguez, G., and Hackett, P.B. (2000) Ectopic expression of c-ski disrupts gastrulation and neural patterning in zebrafish. Mechanisms of Development. 95(1-2):147-162

Li, Y.X., Farrell, M.J., Liu, R., Mohanty, N., and Kirby, M.L. (2000) Double-stranded RNA injection produces null phenotypes in zebrafish. Developmental Biology. 217(2):394-405

Mangos, S., Krawetz, R., and Kelly, G.M. (2000) The translocon-associated protein b (TRAPb) in zebrafish embryogenesis. I. Enhanced expression of transcripts in notochord and hatching gland precursors. Molecular and cellular biochemistry. 215(1-2):93-101

Muraoka, O., Ichikawa, H., Shi, H., Okumura, S., Taira, E., Higuchi, H., Hirano, T., Hibi, M., and Miki, N. (2000) Kheper, a Novel ZFH/δEF1 Family Member, Regulates the Development of the Neuroectoderm of Zebrafish (Danio rerio). Developmental Biology. 228(1):29-40

Nguyen, V.H., Trout, J., Connors, SA.., Andermann, P., Weinberg, E., and Mullins, M.C. (2000) Dorsal and intermediate neuronal cell types of the spinal cord are established by a BMP signaling pathway. Development (Cambridge, England). 127(6):1209-1220

Odenthal, J., van Eeden, F.J., Haffter, P., Ingham, P.W., and Nüsslein-Volhard, C. (2000) Two distinct cell populations in the floor plate of the zebrafish are induced by different pathways. Developmental Biology. 219(2):350-363

Rubinstein, A.L., Lee, D., Luo, R., Henion, P.D., and Halpern, M.E. (2000) Genes dependent on zebrafish cyclops function identified by AFLP differential gene expression screen. Genesis (New York, N.Y. : 2000). 26(1):86-97

Semino, C.E. and Allende, M.L. (2000) Chitin oligosaccharides as candidate patterning agents in zebrafish embryogenesis. The International journal of developmental biology. 44(2):183-193

Sirotkin, H.I., Gates, M.A., Kelly, P.D., Schier, A.F., and Talbot, W.S. (2000) fast1 is required for the development of dorsal axial structures in zebrafish. Current biology : CB. 10(17):1051-1054

Thisse, B., Wright, C.V.E., and Thisse, C. (2000) Activin- and Nodal-related factors control antero-posterior patterning of the zebrafish embryo. Nature. 403(6768):425-428

Appel, B., Fritz, A., Westerfield, M., Grunwald, D.J., Eisen, J.S., and Riley, B.B. (1999) Delta-mediated specification of midline cell fates in zebrafish embryos. Current biology : CB. 9:247-256

Barth, K.A., Kishimoto, Y., Rohr, K.B., Seydler, C., Schulte-Merker, S., and Wilson, S.W. (1999) Bmp activity establishes a gradient of positional information throughout the entire neural plate. Development (Cambridge, England). 126(22):4977-4987

Dheen, T., Sleptsova-Friedrich, I., Xu, Y., Clark, M., Lehrach, H., Gong, Z., and Korzh, V. (1999) Zebrafish tbx-c functions during formation of midline structures. Development (Cambridge, England). 126(12):2703-2713

Gates, M.A., Kim, L., Egan, E.S., Cardozo, T., Sirotkin, H.I., Dougan, S.T., Lashkari, D., Abagyan, R., Schier, A.F., and Talbot, W.S. (1999) A genetic linkage map for zebrafish: comparative analysis and localization of genes and expressed sequences. Genome research. 9(4):334-347

Hauptmann, G. (1999) Two-color detection of mRNA transcript localizations in fish and fly embryos using alkaline phosphatase and beta-galactosidase conjugated antibodies. Development genes and evolution. 209(5):317-321

Lele, Z., Hartson, S.D., Martin, C.C., Whitesell, L., Matts, R.L., and Krone, P.H. (1999) Disruption of zebrafish somite development by pharmacologic inhibition of hsp90. Developmental Biology. 210(1):56-70

Mendonsa, E.S. and Riley, B.B. (1999) Genetic analysis of tissue interactions required for otic placode induction in the zebrafish. Developmental Biology. 206:100-112

Nikaido, M., Tada, M., Takeda, H., Kuroiwa, A., and Ueno, N. (1999) In vivo analysis using variants of zebrafish BMPR-IA: range of action and involvement of BMP in ectoderm patterning. Development (Cambridge, England). 126:181-190

Rodaway, A., Takeda, H., Koshida, S., Broadbent, J., Price, B., Smith, J.C., Patient, R., and Holder, N. (1999) Induction of the mesendoderm in the zebrafish germ ring by yolk cell-derived TGF-ß; family signals and discrimination of mesoderm and endoderm by FGF. Development (Cambridge, England). 126(14):3067-3078

Schilling, T.F., Concordet, J.-P., and Ingham, P.W. (1999) Regulation of left-right asymmetries in the zebrafish by Shh and BMP4. Developmental Biology. 210(2):277-287

Thisse, C. and Thisse, B. (1999) Antivin, a novel and divergent member of the TGFß superfamily, negatively regulates mesoderm induction. Development (Cambridge, England). 126:229-240

Wang, J.M., Prefontaine, G.G., Lemieux, M.E., Pope, L., Akimenko, M.A., and Hache, R.J. (1999) Developmental effects of ectopic expression of the glucocorticoid receptor DNA binding domain are alleviated by an amino acid substitution that interferes with homeodomain binding. Molecular and cellular biology. 19(10):7106-7122

Amacher, S.L. and Kimmel, C.B. (1998) Promoting notochord fate and repressing muscle development in zebrafish axial mesoderm. Development (Cambridge, England). 125:1397-1406

Erter, C.E., Solnica-Krezel, L., and Wright, C.V.E. (1998) Zebrafish nodal-related 2 encodes an early mesendodermal inducer signaling from the extraembryonic yolk syncytial layer. Developmental Biology. 204:361-372

Griffin, K.J.P., Amacher, S.L., Kimmel, C.B., and Kimelman, D. (1998) Molecular identification of spadetail: regulation of zebrafish trunk and tail mesoderm formation by T-box genes. Development (Cambridge, England). 125:3379-3388

Joore, J., Van de Water, S., Betist, M., Van den Eijnden-van Raaij A., and Zivkovic, D. (1998) Protein kinase A is involved in the induction of early mesodermal marker genes by activin. Mechanisms of Development. 79:5-15

Koshida, S., Shinya, M., Mizuno, T., Kuroiwa, A., and Takeda, H. (1998) Initial anteroposterior pattern of the zebrafish central nervous system is determined by differential competence of the epiblast. Development (Cambridge, England). 125:1957-1966

Makita, R., Mizuno, T., Koshida, S., Kuroiwa, A., and Takeda, H. (1998) Zebrafish wnt11: pattern and regulation of the expression by the yolk cell and no tail activity. Mechanisms of Development. 71:165-176

Read, E.M., Rodaway, A.R., Neave, B., Brandon, N., Holder, N., Patient, R.K., and Walmsley, M.E. (1998) Evidence for non-axial A/P patterning in the nonneural ectoderm of Xenopus and zebrafish pregastrula embryos. The International journal of developmental biology. 42:763-774

Serbedzija, G.N., Chen, J.-N., and Fishman, M.C. (1998) Regulation in the heart field of zebrafish. Development (Cambridge, England). 125:1095-1101

Yamanaka, Y., Mizuno, T., Sasai, Y., Kishi, M., Takeda, H., Kim, C.-H., Hibi, M., and Hirano, T. (1998) A novel homeobox gene, dharma, can induce the organizer in a non-cell-autonomous manner. Genes & Development. 12:2345-2353

Blagden, C.S., P.D. Currie, P.W. Ingham, and S.M. Hughes (1997) Notochord induction of zebrafish slow muscle mediated by Sonic hedgehog. Genes & Development. 11(17):2163-2175

Chen, J.-N., van Eeden, F.J.M., Warren, K.S., Chin, A., Nüsslein-Volhard, C., Haffter, P., and Fishman, M.C. (1997) Left-right pattern of cardiac BMP4 may drive asymmetry of the heart in zebrafish. Development (Cambridge, England). 124(21):4373-4382

Fisher, S., Amacher, S.L., and Halpern, M.E. (1997) Loss of cerebum function ventralizes the zebrafish embryo. Development (Cambridge, England). 124(7):1301-1311

Glasgow, E., Karavanov, A.A., and Dawid, I.B. (1997) Neuronal and neuroendocrine expression of lim3, a LIM class homeobox gene, is altered in mutant zebrafish with axial signaling defects. Developmental Biology. 192:405-419

Heisenberg, C.P. and Nüsslein-Volhard, C. (1997) The function of silberblick in the positioning of the eye anlage in the zebrafish embryo. Developmental Biology. 184(1):85-94

Melby, A.E., Kimelman, D., and Kimmel, C.B. (1997) Spatial regulation of floating head expression in the developing notochord. Developmental Dynamics : an official publication of the American Association of Anatomists. 209(2):156-165

Nikaido, M., Tada, M., Saji, T., and Ueno, N. (1997) Conservation of BMP signaling in zebrafish mesoderm patterning. Mechanisms of Development. 61(1-2):75-88

Sumoy, L., Keasey, J.B., Dittman, T.D., and Kimelman, D. (1997) A role for notochord in axial vascular development revealed by analysis of phenotype and the expression of VEGR-2 in zebrafish flh and ntl mutant embryos. Mechanisms of Development. 63(1):15-27

Yoon, C., Kawakami, K., and N. Hopkins (1997) Zebrafish vasa homologue RNA is localized to the cleavage planes of 2- and 4-cell-stage embryos and is expressed in the primordial germ cells. Development (Cambridge, England). 124(16):3157-3165

Conlon, F.L., Sedgwick, S.G., Weston, K.M., and Smith, J.C. (1996) Inhibition of Xbra transcription activation causes defects in mesodermal patterning and reveals autoregulation of Xbra in dorsal mesoderm. Development (Cambridge, England). 122(8):2427-2435

Danos, M.C. and Yost, H.J. (1996) Role of notochord in specification of cardiac left-right orientation in zebrafish and Xenopus. Developmental Biology. 177:96-103

Driever, W., Solnica-Krezel, L., Schier, A.F., Neuhauss, S.C., Malicki, J., Stemple, D.L., Stainier, D.Y., Zwartkruis, F., Abdelilah, S., Rangini, Z., Belak, J., and Boggs, C. (1996) A genetic screen for mutations affecting embryogenesis in zebrafish. Development (Cambridge, England). 123:37-46

Franklin, J.L. and Sargent, T.D. (1996) Ventral neural cadherin, a novel cadherin expressed in a subset of neural tissues in the zebrafish embryo. Developmental Dynamics : an official publication of the American Association of Anatomists. 206:121-130

Hammerschmidt, M., Pelegri, F., Mullins, M.C., Kane, D.A., Brand, M., van Eeden, F.J., Furutani-Seiki, M., Granato, M., Haffter, P., Heisenberg, C.P., Jiang, Y.J., Kelsh, R.N., Odenthal, J., Warga, R.M., and Nüsslein-Volhard, C. (1996) Mutations affecting morphogenesis during gastrulation and tail formation in the zebrafish, Danio rerio. Development (Cambridge, England). 123:143-151

Hammerschmidt, M., Serbedzija, G.N., and McMahon, A.P. (1996) Genetic analysis of dorsoventral pattern formation in the zebrafish: requirement of a BMP-like ventralizing activity and its dorsal repressor. Genes & Development. 10(19):2452-2461

Heisenberg, C.P., Brand, M., Jiang, Y.J., Warga, R.M., Beuchle, D., van Eeden, F.J., Furutani-Seiki, M., Granato, M., Haffter, P., Hammerschmidt, M., Kane, D.A., Kelsh, R.N., Mullins, M.C., Odenthal, J., and Nüsslein-Volhard, C. (1996) Genes involved in forebrain development in the zebrafish, Danio rerio. Development (Cambridge, England). 123:191-203

Mullins, M.C., Hammerschmidt, M., Kane, D.A., Odenthal, J., Brand, M., van Eeden, F.J., Furutani-Seiki, M., Granato, M., Haffter, P., Heisenberg, C.P., Jiang, Y.J., Kelsh, R.N., and Nüsslein-Volhard, C. (1996) Genes establishing dorsoventral pattern formation in the zebrafish embryo: the ventral specifying genes. Development (Cambridge, England). 123:81-93

Renucci, A., Lemarchandel, V., and Rosa, F. (1996) An activated form of type I serine/threonine kinase receptor TARAM-A reveals a specific signalling pathway involved in fish head organiser formation. Development (Cambridge, England). 122:3735-3743

Solnica-Krezel, L., Stemple, D.L., Mountcastle-Shah, E., Rangini, Z., Neuhauss, S.C., Malicki, J., Schier, A.F., Stainier, D.Y., Zwartkruis, F., Abdelilah, S., and Driever, W. (1996) Mutations affecting cell fates and cellular rearrangements during gastrulation in zebrafish. Development (Cambridge, England). 123:67-80

Strähle, U., Blader, P., and Ingham, P.W. (1996) Expression of axial and sonic hedgehog in wildtype and midline defective zebrafish embryos. The International journal of developmental biology. 40(5):929-940

Weinberg, E.S., Allende, M.L., Kelly, C.S., Abdelhamid, A., Murakami, T., Andermann, P., Doerre, O.G., Grunwald, D.J., and Riggleman, B. (1996) Developmental regulation of zebrafish MyoD in wild-type, no-tail and spadetail embryos. Development (Cambridge, England). 122:271-280

Halpern, M.E., Thisse, C., Ho, R.K., Thisse, B., Riggleman, B., Trevarrow, B., Weinberg, E.S., Postlethwait, J.H., and Kimmel, C.B. (1995) Cell-autonomous shift from axial to paraxial mesodermal development in zebrafish floating head mutants. Development (Cambridge, England). 121:4257-4264

Kelly, G.M., Greenstein, P., Erezyilmaz, D.F., and Moon, R.T. (1995) Zebrafish wnt8 and wnt8b share a common activity but are involved in distinct developmental pathways. Development (Cambridge, England). 121:1787-1799

Schulte-Merker, S. and Smith, J.C. (1995) Mesoderm formation in response to Brachyury requires FGF signalling. Current biology : CB. 5:62-67

Thisse, C., Thisse, B., and Postlethwait, J.H. (1995) Expression of snail2, a second member of the zebrafish Snail family, in cephalic mesendoderm and presumptive neural crest of wild-type and spadetail mutant embryos. Developmental Biology. 172:86-99

Xu, Q.L., Alldus, G., Holder, N., and Wilkinson, D.G. (1995) Expression of truncated Sek-1 receptor tyrosine kinase disrupts the segmental restriction of gene expression in the Xenopus and zebrafish hindbrain. Development (Cambridge, England). 121:4005-4016

Postlethwait, J., Johnson, S., Midson, C.N., Talbot, W.S., Gates, M., Ballenger, E.W., Africa, D., Andrews, R., Carl, T., Eisen, J.S., Horne, S., Kimmel, C.B., Hutchinson, M., Johnson, M., and Rodriguez, A. (1994) A genetic linkage map for the zebrafish. Science (New York, N.Y.). 264:699-703

Schulte-Merker, S., van Eeden, F.J.M., Halpern, M.E., Kimmel, C.B., and Nüsslein-Volhard, C. (1994) no tail (ntl) is the zebrafish homologue of the mouse T (Brachyury) gene. Development (Cambridge, England). 120:1009-1015

Xu, Q., Holder, N., Patient, R., and Wilson, S.W. (1994) Spatially regulated expression of three receptor tyrosine kinase genes during gastrulation in the zebrafish. Development (Cambridge, England). 120:287-299

Hammerschmidt, M. and Nüsslein-Volhard, C. (1993) The expression of a zebrafish gene homologous to Drosophila snail suggests a conserved function in invertebrate and vertebrate gastrulation. Development (Cambridge, England). 119:1107-1118

Kispert, A. and Herrmann, B.G. (1993) The Brachyury gene encodes a novel DNA binding protein. The EMBO journal. 12:3211-3220

Strähle, U., and Jesuthasan, S. (1993) Ultraviolet irradiation impairs epiboly in zebrafish embryos: evidence for a microtubule-dependent mechanism of epiboly. Development (Cambridge, England). 119:909-919

Thisse, C., Thisse, B., Schilling, T.F., and Postlethwait, J.H. (1993) Structure of the zebrafish snail1 gene and its expression in wild-type, spadetail and no tail mutant embryos. Development (Cambridge, England). 119:1203-1215