Xue et al., 2019 - A 3D Atlas of Hematopoietic Stem and Progenitor Cell Expansion by Multi-dimensional RNA-Seq Analysis. Cell Reports   27:1567-1578.e5 Full text @ Cell Rep.
179 Genes / Markers
Marker Type Symbol Name
Gene ackr3b atypical chemokine receptor 3b
Gene acvr1ba activin A receptor type 1Ba
Gene acvr1bb activin A receptor type 1Bb
Gene acvr2aa activin A receptor type 2Aa
Gene adam10a ADAM metallopeptidase domain 10a
Gene adam15 ADAM metallopeptidase domain 15
Gene adam17a ADAM metallopeptidase domain 17a
Gene adcyap1a adenylate cyclase activating polypeptide 1a
Gene adcyap1b adenylate cyclase activating polypeptide 1b
Gene adcyap1r1b adenylate cyclase activating polypeptide 1b (pituitary) receptor type I
Gene adipor1a adiponectin receptor 1a
Gene adipor1b adiponectin receptor 1b
Gene adipor2 adiponectin receptor 2
Gene adrb3a adrenoceptor beta 3a
Gene angpt1 angiopoietin 1
Gene angptl3 angiopoietin-like 3
Gene apln apelin
Gene apobb.1 apolipoprotein Bb, tandem duplicate 1
Gene appa amyloid beta (A4) precursor protein a
Gene appb amyloid beta (A4) precursor protein b
Gene arf1 ADP-ribosylation factor 1
Gene atf7ip activating transcription factor 7 interacting protein
Gene atp6ap2 ATPase H+ transporting accessory protein 2
Gene b2m beta-2-microglobulin
Gene bdnf brain-derived neurotrophic factor
Gene calca calcitonin/calcitonin-related polypeptide, alpha
Gene calcrlb calcitonin receptor-like b
Gene calm1a calmodulin 1a
Gene calm3a calmodulin 3a (phosphorylase kinase, delta)
Gene calr calreticulin
Gene cav1 caveolin 1
Gene ccl25b chemokine (C-C motif) ligand 25b
Gene cd44b CD44 molecule (Indian blood group) b
Gene chad chondroadherin
Gene col1a1b collagen, type I, alpha 1b
Gene col1a2 collagen, type I, alpha 2
Gene col2a1a collagen, type II, alpha 1a
Gene col2a1b collagen, type II, alpha 1b
Gene col4a4 collagen, type IV, alpha 4
Gene col4a5 collagen, type IV, alpha 5 (Alport syndrome)
Gene col4a6 collagen, type IV, alpha 6
Gene col11a1a collagen, type XI, alpha 1a
Gene coro1a coronin, actin binding protein, 1A
Gene csf1a colony stimulating factor 1a (macrophage)
Gene csf1rb colony stimulating factor 1 receptor, b
Gene ccn2a cellular communication network factor 2a
Gene cxcl12b chemokine (C-X-C motif) ligand 12b (stromal cell-derived factor 1)
Gene cxcr3.2 chemokine (C-X-C motif) receptor 3, tandem duplicate 2
Gene cxcr4b chemokine (C-X-C motif), receptor 4b
Gene dla deltaA
Gene dlb deltaB
Gene edn1 endothelin 1
Gene ednraa endothelin receptor type Aa
Gene ednrba endothelin receptor Ba
Gene efna1a ephrin-A1a
Gene efna2a ephrin-A2a
Gene efna3b ephrin-A3b
Gene efnb2b ephrin-B2b
Gene efnb3a ephrin-B3a
Gene efnb3b ephrin-B3b
Gene egf epidermal growth factor
Gene epha7 eph receptor A7
Gene ephb4a eph receptor B4a
Gene ephb4b eph receptor B4b
Gene epor erythropoietin receptor
Gene f2r coagulation factor II (thrombin) receptor
Gene f13a1b coagulation factor XIII, A1 polypeptide b
Gene fgf1b fibroblast growth factor 1b
Gene fgfrl1a fibroblast growth factor receptor like 1a
Gene fgfrl1b fibroblast growth factor receptor like 1b
Gene fli1 Fli-1 proto-oncogene, ETS transcription factor
Gene flt4 fms related receptor tyrosine kinase 4
Gene fn1a fibronectin 1a
Gene foxn1 forkhead box N1
Gene fzd2 frizzled class receptor 2
Gene fzd7a frizzled class receptor 7a
Gene gata1a GATA binding protein 1a
Gene gdf10a growth differentiation factor 10a
Gene gdf11 growth differentiation factor 11
Gene gnai2a guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2a
Gene gnai2b guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2b
Gene hbbe1.1 hemoglobin beta embryonic-1.1
Gene hbegfa heparin-binding EGF-like growth factor a
Gene hdr hematopoietic death receptor
Gene hmgb1a high mobility group box 1a
Gene hmmr hyaluronan-mediated motility receptor (RHAMM)
Gene hsp90aa1.2 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 2
Gene hsp90b1 heat shock protein 90, beta (grp94), member 1
Gene il2rga interleukin 2 receptor, gamma a
Gene il2rgb interleukin 2 receptor, gamma b
Gene il4 interleukin 4
Gene il10ra interleukin 10 receptor, alpha
Gene il10rb interleukin 10 receptor, beta
Gene il12ba interleukin 12Ba
Gene il12rb2 interleukin 12 receptor, beta 2a
Gene il13ra1 interleukin 13 receptor, alpha 1
Gene inhbaa inhibin subunit beta Aa
Gene inhbb inhibin subunit beta B
Gene irf4a interferon regulatory factor 4a
Gene itga1 integrin, alpha 1
Gene itga2b integrin, alpha 2b
Gene itga4 integrin alpha 4
Gene itga5 integrin, alpha 5 (fibronectin receptor, alpha polypeptide)
Gene itga6b integrin, alpha 6b
Gene itga9 integrin, alpha 9
Gene itga10 integrin, alpha 10
Gene itga11a integrin, alpha 11a
Gene itgav integrin, alpha V
Gene itgb1a integrin, beta 1a
Gene itgb2 integrin, beta 2
Gene itgb3b integrin beta 3b
Gene kcnq5b potassium voltage-gated channel, KQT-like subfamily, member 5b
Gene kdr kinase insert domain receptor (a type III receptor tyrosine kinase)
Gene kdrl kinase insert domain receptor like
Gene kel Kell metallo-endopeptidase (Kell blood group)
Gene kita KIT proto-oncogene, receptor tyrosine kinase a
Gene kitlga kit ligand a
Gene kng1 kininogen 1
Gene lama4 laminin, alpha 4
Gene lamb1a laminin, beta 1a
Gene ldlrb low density lipoprotein receptor b
Gene mdkb midkine b
Gene mfap2 microfibril associated protein 2
Gene mfap4.1 microfibril associated protein 4, tandem duplicate 1
Gene mfng MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
Gene mmp9 matrix metallopeptidase 9
Gene myb v-myb avian myeloblastosis viral oncogene homolog
Gene myod1 myogenic differentiation 1
Gene nid1a nidogen 1a
Gene notch1a notch receptor 1a
Gene notch1b notch receptor 1b
Gene notch2 notch receptor 2
Gene notch3 notch receptor 3
Gene nrp1a neuropilin 1a
Gene nrp1b neuropilin 1b
Gene nrp2b neuropilin 2b
Gene oclna occludin a
Gene pclaf PCNA clamp associated factor
Gene plgrkt plasminogen receptor, C-terminal lysine transmembrane protein
Gene psap prosaposin
Gene psen1 presenilin 1
Gene rag1 recombination activating 1
Gene rpsa ribosomal protein SA
Gene rtn4a reticulon 4a
Gene runx1 RUNX family transcription factor 1
Gene s1pr5a sphingosine-1-phosphate receptor 5a
Gene s1pr5b sphingosine-1-phosphate receptor 5b
Gene sdc2 syndecan 2
Gene sdc4 syndecan 4
Gene sema3aa sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Aa
Gene sema3c sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C
Gene sema3fb sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fb
Gene serpine1 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1
Gene serpine2 serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2
Gene smchd1 structural maintenance of chromosomes flexible hinge domain containing 1
Gene sort1a sortilin 1a
Gene sort1b sortilin 1b
Gene spi1b Spi-1 proto-oncogene b
Gene tal1 T-cell acute lymphocytic leukemia 1
Gene tcima transcriptional and immune response regulator a
Gene tfr1b transferrin receptor 1b
Gene tgfb2 transforming growth factor, beta 2
Gene tgfbr1b transforming growth factor, beta receptor 1 b
Gene tgm2a transglutaminase 2, C polypeptide A
Gene tgm2b transglutaminase 2b
Gene thbs1b thrombospondin 1b
Gene thbs2a thrombospondin 2a
Gene thbs2b thrombospondin 2b
Gene tie1 tyrosine kinase with immunoglobulin-like and EGF-like domains 1
Gene tnfrsf21 tumor necrosis factor receptor superfamily, member 21
Gene uba52 ubiquitin A-52 residue ribosomal protein fusion product 1
Gene vaspb vasodilator stimulated phosphoprotein b
Gene vcam1b vascular cell adhesion molecule 1b
Gene vegfab vascular endothelial growth factor Ab
Gene vegfc vascular endothelial growth factor c
Gene vim vimentin
Gene wnt2 wingless-type MMTV integration site family member 2
Gene wnt4b wingless-type MMTV integration site family, member 4b
Gene wnt11 wingless-type MMTV integration site family, member 11