ZFIN is now using GRCz12tu for Genomic Data
Gene
nid1a
- ID
- ZDB-GENE-050302-58
- Name
- nidogen 1a
- Symbol
- nid1a Nomenclature History
- Previous Names
-
- nid1
- im:7055206
- im:7142300
- mg:bb01h02
- Type
- protein_coding_gene
- Location
- Chr: 13 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable calcium ion binding activity. Predicted to act upstream of or within cell-matrix adhesion. Predicted to be located in basement membrane and extracellular region. Is expressed in several structures, including digestive system; myoseptum; nervous system; optic fissure; and swim bladder. Orthologous to human NID1 (nidogen 1).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 8 figures from 4 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Conserved_site | IPR018097 | EGF-like calcium-binding, conserved site |
| Domain | IPR000716 | Thyroglobulin type-1 |
| Domain | IPR000742 | EGF-like domain |
| Domain | IPR001881 | EGF-like calcium-binding domain |
| Domain | IPR003886 | NIDO domain |
| Domain | IPR006605 | G2 nidogen/fibulin G2F |
| Domain | IPR024731 | EGF domain |
| Domain | IPR026823 | Complement Clr-like EGF domain |
| Domain | IPR049883 | NOTCH1 EGF-like calcium-binding domain |
| Family | IPR050778 | Cueball/EGF/LRP/Nidogen |
| Homologous_superfamily | IPR009017 | Green fluorescent protein |
| Homologous_superfamily | IPR011042 | Six-bladed beta-propeller, TolB-like |
| Homologous_superfamily | IPR036857 | Thyroglobulin type-1 superfamily |
| PTM | IPR000152 | EGF-type aspartate/asparagine hydroxylation site |
| Repeat | IPR000033 | LDLR class B repeat |
Domain Details Per Protein
| Protein | Additional Resources | Length | Complement Clr-like EGF domain | Cueball/EGF/LRP/Nidogen | EGF domain | EGF-like calcium-binding, conserved site | EGF-like calcium-binding domain | EGF-like domain | EGF-type aspartate/asparagine hydroxylation site | G2 nidogen/fibulin G2F | Green fluorescent protein | LDLR class B repeat | NIDO domain | NOTCH1 EGF-like calcium-binding domain | Six-bladed beta-propeller, TolB-like | Thyroglobulin type-1 | Thyroglobulin type-1 superfamily |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| UniProtKB:A0A8M9PN19 | InterPro | 257 | |||||||||||||||
| UniProtKB:F1RAG3 | InterPro | 1175 |
- Genome Browsers
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers