ZFIN is now using GRCz12tu for Genomic Data
Gene
tnfrsf21
- ID
- ZDB-GENE-030131-5971
- Name
- tumor necrosis factor receptor superfamily, member 21
- Symbol
- tnfrsf21 Nomenclature History
- Previous Names
- Type
- protein_coding_gene
- Location
- Chr: 20 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Acts upstream of or within establishment of endothelial blood-brain barrier and sprouting angiogenesis. Predicted to be located in membrane. Predicted to be active in plasma membrane. Is expressed in floor plate; forerunner cell group; and pronephric duct. Orthologous to human TNFRSF21 (TNF receptor superfamily member 21).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 3 figures from 3 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- 3 figures from Tam et al., 2012
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR000488 | Death domain |
| Domain | IPR001368 | TNFR/NGFR cysteine-rich region |
| Domain | IPR034034 | Tumor necrosis factor receptor 21, N-terminal |
| Domain | IPR034037 | Tumor necrosis factor receptor 21, death domain |
| Family | IPR022330 | Tumour necrosis factor receptor 21 |
| Homologous_superfamily | IPR011029 | Death-like domain superfamily |
Domain Details Per Protein
| Protein | Additional Resources | Length | Death domain | Death-like domain superfamily | TNFR/NGFR cysteine-rich region | Tumor necrosis factor receptor 21, death domain | Tumor necrosis factor receptor 21, N-terminal | Tumour necrosis factor receptor 21 |
|---|---|---|---|---|---|---|---|---|
| UniProtKB:A5D8S6 | InterPro | 637 | ||||||
| UniProtKB:A0A8M1N906 | InterPro | 652 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
tnfrsf21-201
(1)
|
Ensembl | 4,854 nt |
Interactions and Pathways
No data available
| Name | Type | Antigen Genes | Isotype | Host Organism | Assay | Source | Citations |
|---|---|---|---|---|---|---|---|
| Ab2-tnfrsf21 |
|
1 | |||||
| Ab1-tnfrsf21 |
|
1 |
Plasmids
No data available
- Genome Browsers