Accogli, A., Shakya, S., Yang, T., Insinna, C., Kim, S.Y., Bell, D., Butov, K.R., Severino, M., Niceta, M., Scala, M., Lee, H.S., Yoo, T., Stauffer, J., Zhao, H., Fiorillo, C., Pedemonte, M., Diana, M.C., Baldassari, S., Zakharova, V., Shcherbina, A., Rodina, Y., Fagerberg, C., Roos, L.S., Wierzba, J., Dobosz, A., Gerard, A., Potocki, L., Rosenfeld, J.A., Lalani, S.R., Scott, T.M., Scott, D., Azamian, M.S., Louie, R., Moore, H.W., Champaigne, N.L., Hollingsworth, G., Torella, A., Nigro, V., Ploski, R., Salpietro, V., Zara, F., Pizzi, S., Chillemi, G., Ognibene, M., Cooney, E., Do, J., Linnemann, A., Larsen, M.J., Specht, S., Walters, K.J., Choi, H.J., Choi, M., Tartaglia, M., Youkharibache, P., Chae, J.H., Capra, V., Park, S.G., Westlake, C.J. (2024) Variants in the WDR44 WD40-repeat domain cause a spectrum of ciliopathy by impairing ciliogenesis initiation. Nature communications. 15:365365
|
Affaticati, P., Yamamoto, K., Rizzi, B., Bureau, C., Peyriéras, N., Pasqualini, C., Demarque, M., Vernier, P. (2015) Identification of the optic recess region as a morphogenetic entity in the zebrafish forebrain. Scientific Reports. 5:8738
|
Ahrens, M.B., Li, J.M., Orger, M.B., Robson, D.N., Schier, A.F., Engert, F., and Portugues, R. (2012) Brain-wide neuronal dynamics during motor adaptation in zebrafish. Nature. 485(7399):471-477
|
|
|
Akerboom, J., Chen, T.W., Wardill, T.J., Tian, L., Marvin, J.S., Mutlu, S., Calderón, N.C., Esposti, F., Borghuis, B.G., Sun, X.R., Gordus, A., Orger, M.B., Portugues, R., Engert, F., Macklin, J.J., Filosa, A., Aggarwal, A., Kerr, R.A., Takagi, R., Kracun, S., Shigetomi, E., Khakh, B.S., Baier, H., Lagnado, L., Wang, S.S., Bargmann, C.I., Kimmel, B.E., Jayaraman, V., Svoboda, K., Kim, D.S., Schreiter, E.R., and Looger, L.L. (2012) Optimization of a GCaMP Calcium Indicator for Neural Activity Imaging. The Journal of neuroscience : the official journal of the Society for Neuroscience. 32(40):13819-13840
|
Al-Kurbi, A.A., Da'as, S.I., Aamer, W., Krishnamoorthy, N., Poggiolini, I., Abdelrahman, D., Elbashir, N., Al-Shabeeb Akil, A., Glass, G.E., Fakhro, K.A. (2022) A recessive variant in SIM2 in a child with complex craniofacial anomalies and global developmental delay. European Journal of Medical Genetics. 65(4):104455
|
|
|
Alyenbaawi, H., Kanyo, R., Locskai, L.F., Kamali-Jamil, R., DuVal, M.G., Bai, Q., Wille, H., Burton, E.A., Allison, W.T. (2021) Seizures are a druggable mechanistic link between TBI and subsequent tauopathy. eLIFE. 10:
|
|
|
|
|
Ando, H., Sato, T., Ito, T., Yamamoto, J., Sakamoto, S., Nitta, N., Asatsuma-Okumura, T., Shimizu, N., Mizushima, R., Aoki, I., Imai, T., Yamaguchi, Y., Berk, A.J., Handa, H. (2019) Cereblon Control of Zebrafish Brain Size by Regulation of Neural Stem Cell Proliferation. iScience. 15:95-108
|
Anuppalle, M., Maddirevula, S., Kumar, A., Huh, T.L., Choe, J., Rhee, M. (2017) Expression patterns of prune2 is regulated by Notch and retinoic acid signaling pathways in the zebrafish embryogenesis. Gene expression patterns : GEP. 23-24:45-51
|
|
|
|
|
Ashikawa, Y., Shiromizu, T., Miura, K., Adachi, Y., Matsui, T., Bessho, Y., Tanaka, T., Nishimura, Y. (2019) C3orf70 Is Involved in Neural and Neurobehavioral Development. Pharmaceuticals (Basel, Switzerland). 12(4):
|
|
|
|
|
Bae, Y.K., Shimizu, T., Yabe, T., Kim, C.H., Hirata, T., Nojima, H., Muraoka, O., Hirano, T., and Hibi, M. (2003) A homeobox gene, pnx, is involved in the formation of posterior neurons in zebrafish. Development (Cambridge, England). 130(9):1853-1865
|
Bai, T., Seebald, J.L., Kim, K.E., Ding, H.M., Szeto, D.P., and Chang, H.C. (2010) Disruption of zebrafish cyclin G-associated kinase (GAK) function impairs the expression of Notch-dependent genes during neurogenesis and causes defects in neuronal development. BMC Developmental Biology. 10:7
|
|
|
|
|
Barth, K.A., Kishimoto, Y., Rohr, K.B., Seydler, C., Schulte-Merker, S., and Wilson, S.W. (1999) Bmp activity establishes a gradient of positional information throughout the entire neural plate. Development (Cambridge, England). 126(22):4977-4987
|
Barykina, N.V., Sotskov, V.P., Gruzdeva, A.M., Wu, Y.K., Portugues, R., Subach, O.M., Chefanova, E.S., Plusnin, V.V., Ivashkina, O.I., Anokhin, K.V., Vlaskina, A.V., Korzhenevskiy, D.A., Nikolaeva, A.Y., Boyko, K.M., Rakitina, T.V., Varizhuk, A.M., Pozmogova, G.E., Subach, F.V. (2020) FGCaMP7, an Improved Version of Fungi-Based Ratiometric Calcium Indicator for In Vivo Visualization of Neuronal Activity. International Journal of Molecular Sciences. 21(8):
|
Bayés, À., Collins, M.O., Reig-Viader, R., Gou, G., Goulding, D., Izquierdo, A., Choudhary, J.S., Emes, R.D., Grant, S.G. (2017) Evolution of complexity in the zebrafish synapse proteome. Nature communications. 8:14613
|
Benedetti, L., Ghilardi, A., Rottoli, E., De Maglie, M., Prosperi, L., Perego, C., Baruscotti, M., Bucchi, A., Del Giacco, L., Francolini, M. (2016) INaP selective inhibition reverts precocious inter- and motorneurons hyperexcitability in the Sod1-G93R zebrafish ALS model. Scientific Reports. 6:24515
|
|
|
Bianco, I.H., Ma, L.H., Schoppik, D., Robson, D.N., Orger, M.B., Beck, J.C., Li, J.M., Schier, A.F., Engert, F., and Baker, R. (2012) The Tangential Nucleus Controls a Gravito-inertial Vestibulo-ocular Reflex. Current biology : CB. 22(14):1285-1295
|
|
|
Bingham, S., Chaudhari, S., Vanderlaan, G., Itoh, M., Chitnis, A., and Chandrasekhar, A. (2003) Neurogenic phenotype of mind bomb mutants leads to severe patterning defects in the zebrafish hindbrain. Developmental Dynamics : an official publication of the American Association of Anatomists. 228(3):451-463
|
|
|
|
|
Breuer, M., Guglielmi, L., Zielonka, M., Hemberger, V., Kölker, S., Okun, J.G., Hoffmann, G.F., Carl, M., Sauer, S.W., Opladen, T. (2019) QDPR homologues in Danio rerio regulate melanin synthesis, early gliogenesis, and glutamine homeostasis. PLoS One. 14:e0215162
|
|
|
Carroll, K.J., Esain, V., Garnaas, M.K., Cortes, M., Dovey, M.C., Nissim, S., Frechette, G.M., Liu, S.Y., Kwan, W., Cutting, C.C., Harris, J.M., Gorelick, D.A., Halpern, M.E., Lawson, N.D., Goessling, W., North, T.E. (2014) Estrogen defines the dorsal-ventral limit of VEGF regulation to specify the location of the hemogenic endothelial niche. Developmental Cell. 29:437-53
|
|
|
Cerveny, K.L., Cavodeassi, F., Turner, K.J., de Jong-Curtain, T.A., Heath, J.K., and Wilson, S.W. (2010) The zebrafish flotte lotte mutant reveals that the local retinal environment promotes the differentiation of proliferating precursors emerging from their stem cell niche. Development (Cambridge, England). 137(13):2107-2115
|
|
|
Chen, C.H., Chu, P.C., Lee, L., Lien, H.W., Lin, T.L., Fan, C.C., Chi, P., Huang, C.J., and Chang, M.S. (2012) Disruption of Murine mp29/Syf2/Ntc31 Gene Results in Embryonic Lethality with Aberrant Checkpoint Response. PLoS One. 7(3):e33538
|
Chen, F., Köhler, M., Cucun, G., Takamiya, M., Kizil, C., Cosacak, M.I., Rastegar, S. (2023) sox1a:eGFP transgenic line and single-cell transcriptomics reveal the origin of zebrafish intraspinal serotonergic neurons. iScience. 26:107342107342
|
Chen, G.D., Chou, C.M., Hwang, S.P., Wang, F.F., Chen, Y.C., Hung, C.C., Chen, J.Y., and Huang, C.J. (2006) Requirement of nuclear localization and transcriptional activity of p53 for its targeting to the yolk syncytial layer (YSL) nuclei in zebrafish embryo and its use for apoptosis assay. Biochemical and Biophysical Research Communications. 344(1):272-282
|
Chen, Q., Jiang, L., Li, C., Hu, D., Bu, J.W., Cai, D., and Du, J.L. (2012) Haemodynamics-driven developmental pruning of brain vasculature in zebrafish. PLoS Biology. 10(8):e1001374
|
Chen, X., Guo, W., Lei, L., Guo, Y., Yang, L., Han, J., Zhou, B. (2020) Bioconcentration and developmental neurotoxicity of novel brominated flame retardants, hexabromobenzene and pentabromobenzene in zebrafish. Environmental pollution (Barking, Essex : 1987). 268:115895
|
Chen, X., Mu, Y., Hu, Y., Kuan, A.T., Nikitchenko, M., Randlett, O., Chen, A.B., Gavornik, J.P., Sompolinsky, H., Engert, F., Ahrens, M.B. (2018) Brain-wide Organization of Neuronal Activity and Convergent Sensorimotor Transformations in Larval Zebrafish. Neuron. 100:876-890.e5
|
|
|
|
|
Cheng, R., Jia, Y., Dai, L., Liu, C., Wang, J., Li, G., Yu, L. (2017) Tris(1,3-dichloro-2-propyl) phosphate disrupts axonal growth, cholinergic system and motor behavior in early life zebrafish. Aquatic toxicology (Amsterdam, Netherlands). 192:7-15
|
Cheng, Y.C., Chiang, M.C., Shih, H.Y., Ma, T.L., Yeh, T.H., Huang, Y.C., Lin, C.Y., Lin, S.J. (2015) The transcription factor hairy/E(spl)-related 2 induces proliferation of neural progenitors and regulates neurogenesis and gliogenesis. Developmental Biology. 397(1):116-28
|
Cheng, Y.C., Hsieh, F.Y., Chiang, M.C., Scotting, P.J., Shih, H.Y., Lin, S.J., Wu, H.L., and Lee, H.T. (2013) Akt1 Mediates Neuronal Differentiation in Zebrafish via a Reciprocal Interaction with Notch Signaling. PLoS One. 8(1):e54262
|
|
|
Choi, H.M., Chang, J.Y., Trinh, L.A., Padilla, J.E., Fraser, S.E., and Pierce, N.A. (2010) Programmable in situ amplification for multiplexed imaging of mRNA expression. Nat. Biotechnol.. 28(11):1208-1212
|
Chung, A.Y., Kim, M.J., Kim, D., Bang, S., Hwang, S.W., Lim, C.S., Lee, S., Park, H.C., and Huh, T.L. (2010) Neuron-specific expression of atp6v0c2 in zebrafish CNS. Developmental Dynamics : an official publication of the American Association of Anatomists. 239(9):2501-2508
|
Chung, H.Y., Chang, C.T., Young, H.W., Hu, S.P., Tzou, W.S., and Hu, C.H. (2013) Ethanol inhibits retinal and CNS differentiation due to failure of cell cycle exit via an apoptosis-independent pathway. Neurotoxicology and teratology. 38C:92-103
|
|
|
Cox, A.G., Tsomides, A., Kim, A.J., Saunders, D., Hwang, K.L., Evason, K.J., Heidel, J., Brown, K.K., Yuan, M., Lien, E.C., Lee, B.C., Nissim, S., Dickinson, B., Chhangawala, S., Chang, C.J., Asara, J.M., Houvras, Y., Gladyshev, V.N., Goessling, W. (2016) Selenoprotein H is an essential regulator of redox homeostasis that cooperates with p53 in development and tumorigenesis. Proceedings of the National Academy of Sciences of the United States of America. 113(38):E5562-71
|
Cruz, C., Maegawa, S., Weinberg, E.S., Wilson, S.W., Dawid, I.B., and Kudoh, T. (2010) Induction and patterning of trunk and tail neural ectoderm by the homeobox gene eve1 in zebrafish embryos. Proceedings of the National Academy of Sciences of the United States of America. 107(8):3564-3569
|
|
|
Dam, T.M., Kim, H.T., Moon, H.Y., Hwang, K.S., Jeong, Y.M., You, K.H., Lee, J.S., and Kim, C.H. (2011) Neuron-specific expression of Scratch genes during early zebrafish development. Molecules and cells. 31(5):471-475
|
|
|
Dee, C.T., Hirst, C.S., Shih, Y.H., Tripathi, V.B., Patient, R.K., and Scotting, P.J. (2008) Sox3 regulates both neural fate and differentiation in the zebrafish ectoderm. Developmental Biology. 320(1):289-301
|
Del Bene, F., Ettwiller, L., Skowronska-Krawczyk, D., Baier, H., Matter, J.M., Birney, E., Wittbrodt, J. (2007) In vivo validation of a computationally predicted conserved Ath5 target gene set. PLoS Genetics. 3:1661-71
|
Diks, S.H., Bink, R.J., van de Water, S., Joore, J., van Rooijen, C., Verbeek, F.J., den Hertog, J., Peppelenbosch, M.P., and Zivkovic, D. (2006) The novel gene asb11: a regulator of the size of the neural progenitor compartment. The Journal of cell biology. 174(4):581-592
|
|
|
Du, W.J., Zhang, R.W., Li, J., Zhang, B.B., Peng, X.L., Cao, S., Yuan, J., Yuan, C.D., Yu, T., Du, J.L. (2018) The Locus Coeruleus Modulates Intravenous General Anesthesia of Zebrafish via a Cooperative Mechanism. Cell Reports. 24:3146-3155.e3
|
|
|
Elkon, R., Milon, B., Morrison, L., Shah, M., Vijayakumar, S., Racherla, M., Leitch, C.C., Silipino, L., Hadi, S., Weiss-Gayet, M., Barras, E., Schmid, C.D., Ait-Lounis, A., Barnes, A., Song, Y., Eisenman, D.J., Eliyahu, E., Frolenkov, G.I., Strome, S.E., Durand, B., Zaghloul, N.A., Jones, S.M., Reith, W., Hertzano, R. (2015) RFX transcription factors are essential for hearing in mice. Nature communications. 6:8549
|
England, S.J., Campbell, P.C., Banerjee, S., Bates, R.L., Grieb, G., Fancher, W.F., Lewis, K.E. (2024) Transcriptional regulators with broad expression in the zebrafish spinal cord. Developmental Dynamics : an official publication of the American Association of Anatomists. 253(11):1036-1055
|
|
|
Erter, C.E., Wilm, T.P., Basler, N., Wright, C.V., and Solnica-Krezel, L. (2001) Wnt8 is required in lateral mesendodermal precursors for neural posteriorization in vivo. Development (Cambridge, England). 128(18):3571-3583
|
Esancy, K., Condon, L., Feng, J., Kimball, C., Curtright, A., Dhaka, A. (2018) A zebrafish and mouse model for selective pruritus via direct activation of TRPA1. eLIFE. 7
|
|
|
Fan, E., Xu, Z., Yan, J., Wang, F., Sun, S., Zhang, Y., Zheng, S., Wang, X., Rao, Y. (2021) Acute exposure to N-Ethylpentylone induces developmental toxicity and dopaminergic receptor-regulated aberrances in zebrafish larvae. Toxicology and applied pharmacology. 417:115477
|
|
|
Farooq, M., Lindbæk, L., Krogh, N., Doganli, C., Keller, C., Mönnich, M., Gonçalves, A.B., Sakthivel, S., Mang, Y., Fatima, A., Andersen, V.S., Hussain, M.S., Eiberg, H., Hansen, L., Kjaer, K.W., Gopalakrishnan, J., Pedersen, L.B., Møllgård, K., Nielsen, H., Baig, S.M., Tommerup, N., Christensen, S.T., Larsen, L.A. (2020) RRP7A links primary microcephaly to dysfunction of ribosome biogenesis, resorption of primary cilia, and neurogenesis. Nature communications. 11:5816
|
Farrell, J.A., Wang, Y., Riesenfeld, S.J., Shekhar, K., Regev, A., Schier, A.F. (2018) Single-cell reconstruction of developmental trajectories during zebrafish embryogenesis. Science (New York, N.Y.). 360(6392)
|
|
|
Feng, J., Zhang, C., Lischinsky, J.E., Jing, M., Zhou, J., Wang, H., Zhang, Y., Dong, A., Wu, Z., Wu, H., Chen, W., Zhang, P., Zou, J., Hires, S.A., Zhu, J.J., Cui, G., Lin, D., Du, J., Li, Y. (2019) A Genetically Encoded Fluorescent Sensor for Rapid and Specific In Vivo Detection of Norepinephrine. Neuron. 102(4):745-761.e8
|
Filippi, A., Duerr, K., Ryu, S., Willaredt, M., Holzschuh, J., and Driever, W. (2007) Expression and function of nr4a2, lmx1b, and pitx3 in zebrafish dopaminergic and noradrenergic neuronal development. BMC Developmental Biology. 7(1):135
|
|
|
Forner-Piquer, I., Faucherre, A., Byram, J., Blaquiere, M., de Bock, F., Gamet-Payrastre, L., Ellero-Simatos, S., Audinat, E., Jopling, C., Marchi, N. (2020) Differential impact of dose-range glyphosate on locomotor behavior, neuronal activity, glio-cerebrovascular structures, and transcript regulations in zebrafish larvae. Chemosphere. 267:128986
|
|
|
|
|
|
|
Gabellini, C., Pucci, C., De Cesari, C., Martini, D., Di Lauro, C., Digregorio, M., Norton, W., Zippo, A., Sessa, A., Broccoli, V., Andreazzoli, M. (2022) CRISPR/Cas9-Induced Inactivation of the Autism-Risk Gene setd5 Leads to Social Impairments in Zebrafish. International Journal of Molecular Sciences. 24(1):
|
|
|
Gao, H., Bu, Y., Wu, Q., Wang, X., Chang, N., Lei, L., Chen, S., Liu, D., Zhu, X., Hu, K., Xiong, J.W. (2015) Mecp2 regulates neural cell differentiation by suppressing the Id1-Her2/Hes5 axis in zebrafish. Journal of Cell Science. 128(12):2340-50
|
Gao, T., Li, J., Li, N., Gao, Y., Yu, L., Zhuang, S., Zhao, Y., Dong, X. (2019) lncrps25 play an essential role in motor neuron development through controlling the expression of olig2 in zebrafish. Journal of Cellular Physiology. 235(4):3485-3496
|
Gates, M.A., Kim, L., Egan, E.S., Cardozo, T., Sirotkin, H.I., Dougan, S.T., Lashkari, D., Abagyan, R., Schier, A.F., and Talbot, W.S. (1999) A genetic linkage map for zebrafish: comparative analysis and localization of genes and expressed sequences. Genome research. 9(4):334-347
|
Ge, S., Li, J., Huang, D., Cai, Y., Fang, J., Jiang, H., Hu, B. (2019) Strong static magnetic field delayed the early development of zebrafish. Open Biology. 9:190137
|
Geling, A., Itoh, M., Tallafuss, A., Chapouton, P., Tannhauser, B., Kuwada, J.Y., Chitnis, A.B., and Bally-Cuif, L. (2003) bHLH transcription factor Her5 links patterning to regional inhibition of neurogenesis at the midbrain-hindbrain boundary. Development (Cambridge, England). 130(8):1591-1604
|
Giacomotto, J., Carroll, A.P., Rinkwitz, S., Mowry, B., Cairns, M.J., Becker, T.S. (2016) Developmental suppression of schizophrenia-associated miR-137 alters sensorimotor function in zebrafish. Translational psychiatry. 6:e818
|
|
|
Gonzalez, E.M., Fekany-Lee, K., Carmany-Rampey, A., Erter, C., Topczewski, J., Wright, C.V.E., and Solnica-Krezel, L. (2000) Head and trunk in zebrafish arise via coinhibition of BMP signaling by bozozok and chordino. Genes & Development. 14(24):3087-3092
|
|
|
Gu, J., Guo, M., Huang, C., Wang, X., Zhu, Y., Wang, L., Wang, Z., Zhou, L., Fan, D., Shi, L., Ji, G. (2021) Titanium dioxide nanoparticle affects motor behavior, neurodevelopment and axonal growth in zebrafish (Danio rerio) larvae. The Science of the total environment. 754:142315
|
Gu, J., Wu, J., Xu, S., Zhang, L., Fan, D., Shi, L., Wang, J., Ji, G. (2019) Bisphenol F exposure impairs neurodevelopment in zebrafish larvae (Danio rerio). Ecotoxicology and environmental safety. 188:109870
|
Gu, J., Zhang, J., Chen, Y., Wang, H., Guo, M., Wang, L., Wang, Z., Wu, S., Shi, L., Gu, A., Ji, G. (2018) Neurobehavioral effects of bisphenol S exposure in early life stages of zebrafish larvae (Danio rerio). Chemosphere. 217:629-635
|
Guemez-Gamboa, A., Nguyen, L.N., Yang, H., Zaki, M.S., Kara, M., Ben-Omran, T., Akizu, N., Rosti, R.O., Rosti, B., Scott, E., Schroth, J., Copeland, B., Vaux, K.K., Cazenave-Gassiot, A., Quek, D.Q., Wong, B.H., Tan, B.C., Wenk, M.R., Gunel, M., Gabriel, S., Chi, N.C., Silver, D.L., Gleeson, J.G. (2015) Inactivating mutations in MFSD2A, required for omega-3 fatty acid transport in brain, cause a lethal microcephaly syndrome. Nature Genetics. 47(7):809-13
|
|
|
Guo, X., Zhang, S., Lu, S., Zheng, B., Xie, P., Chen, J., Li, G., Liu, C., Wu, Q., Cheng, H., Sang, N. (2018) Perfluorododecanoic acid exposure induced developmental neurotoxicity in zebrafish embryos. Environmental pollution (Barking, Essex : 1987). 241:1018-1026
|
Gupta, T., Marquart, G.D., Horstick, E.J., Tabor, K.M., Pajevic, S., Burgess, H.A. (2018) Morphometric analysis and neuroanatomical mapping of the zebrafish brain. Methods (San Diego, Calif.). 150:49-62
|
Gyimah, E., Xu, H., Dong, X., Qiu, X., Zhang, Z., Bu, Y., Akoto, O. (2021) Developmental neurotoxicity of low concentrations of bisphenol A and S exposure in zebrafish. Chemosphere. 262:128045
|
Hamilton, N., Rutherford, H.A., Petts, J.J., Isles, H.M., Weber, T., Henneke, M., Gärtner, J., Dunning, M.J., Renshaw, S.A. (2020) The failure of microglia to digest developmental apoptotic cells contributes to the pathology of RNASET2-deficient leukoencephalopathy. Glia. 68(7):1531-1545
|
Han, J., Ji, C., Guo, Y., Yan, R., Hong, T., Dou, Y., An, Y., Tao, S., Qin, F., Nie, J., Ji, C., Wang, H., Tong, J., Xiao, W., Zhang, J. (2017) Mechanisms underlying melatonin-mediated prevention of fenvalerate-induced behavioral and oxidative toxicity in zebrafish. Journal of toxicology and environmental health. Part A. 80(23-24):1331-1341
|
Han, S., Fei, F., Sun, S., Zhang, D., Dong, Q., Wang, X., Wang, L. (2020) Increased anxiety was found in serpini1 knockout zebrafish larval. Biochemical and Biophysical Research Communications. 534:1013-1019
|
|
|
Han, Y., Sun, K., Yu, S., Qin, Y., Zhang, Z., Luo, J., Hu, H., Dai, L., Cui, M., Jiang, C., Liu, F., Huang, Y., Gao, P., Chen, X., Xin, T., Ren, X., Wu, X., Song, J., Wang, Q., Tang, Z., Chen, J., Zhang, H., Zhang, X., Liu, M., Luo, D. (2024) A Mettl16/m6A/mybl2b/Igf2bp1 axis ensures cell cycle progression of embryonic hematopoietic stem and progenitor cells. The EMBO journal. 43(10):1990-2014
|
Hans, S., Scheer, N., Riedl, I., Von Weizsacker, E., Blader, P., and Campos-Ortega, J.A. (2004) her3, a zebrafish member of the hairy-E(spl) family, is repressed by Notch signalling. Development (Cambridge, England). 131(12):2957-2969
|
|
|
Hernandez-Lagunas, L., Choi, I.F., Kaji, T., Simpson, P., Hershey, C., Zhou, Y., Zon, L., Mercola, M., and Artinger, K.B. (2005) Zebrafish narrowminded disrupts the transcription factor prdm1 and is required for neural crest and sensory neuron specification. Developmental Biology. 278(2):347-357
|
|
|
|
|
Hisano, Y., Inoue, A., Taimatsu, K., Ota, S., Ohga, R., Kotani, H., Muraki, M., Aoki, J., Kawahara, A. (2015) Comprehensive analysis of sphingosine-1-phosphate receptor mutants during zebrafish embryogenesis. Genes to cells : devoted to molecular & cellular mechanisms. 20(8):647-58
|
Hoang, T., Wang, J., Boyd, P., Wang, F., Santiago, C., Jiang, L., Yoo, S., Lahne, M., Todd, L.J., Jia, M., Saez, C., Keuthan, C., Palazzo, I., Squires, N., Campbell, W.A., Rajaii, F., Parayil, T., Trinh, V., Kim, D.W., Wang, G., Campbell, L.J., Ash, J., Fischer, A.J., Hyde, D.R., Qian, J., Blackshaw, S. (2020) Gene regulatory networks controlling vertebrate retinal regeneration. Science (New York, N.Y.). 370(6519):
|
|
|
|
|
Howard, A.G., Baker, P.A., Ibarra-García-Padilla, R., Moore, J.A., Rivas, L.J., Tallman, J.J., Singleton, E.W., Westheimer, J.L., Corteguera, J.A., Uribe, R.A. (2021) An atlas of neural crest lineages along the posterior developing zebrafish at single-cell resolution. eLIFE. 10:
|
Hsieh, C.S., Ko, C.Y., Chen, S.Y., Liu, T.M., Wu, J.S., Hu, C.H., and Sun, C.K. (2008) In vivo long-term continuous observation of gene expression in zebrafish embryo nerve systems by using harmonic generation microscopy and morphant technology. Journal of Biomedical Optics. 13(6):064041
|
Hsieh, Y.C., Chiang, M.C., Huang, Y.C., Yeh, T.H., Shih, H.Y., Liu, H.F., Chen, H.Y., Wang, C.P., Cheng, Y.C. (2018) Pparα deficiency inhibits the proliferation of neuronal and glial precursors in the zebrafish central nervous system. Developmental Dynamics : an official publication of the American Association of Anatomists. 247(12):1264-1275
|
Hsu, C.H., Lin, J.S., Lai, K.P., Li, J.W., Chan, T.F., You, M.S., Tse, W.K., Jiang, Y.J. (2015) A new mib allele with a chromosomal deletion covering foxc1a exhibits anterior somite specification defect.. Scientific Reports. 5:10673
|
Hu, C.W., Tseng, C.W., Chien, C.W., Huang, H.C., Ku, W.C., Lee, S.J., Chen, Y.J., and Juan, H.F. (2013) Quantitative Proteomics Reveals Diverse Roles of miR-148a from Gastric Cancer Progression to Neurological Development. Journal of Proteome Research. 12(9):3993-4004
|
Hu, F., Zhao, Y., Yuan, Y., Yin, L., Dong, F., Zhang, W., Chen, X. (2021) Effects of environmentally relevant concentrations of tris (2-chloroethyl) phosphate (TCEP) on early life stages of zebrafish (Danio rerio). Environmental Toxicology and Pharmacology. 83:103600
|
Hu, S., Han, J., Yang, L., Li, S., Guo, Y., Zhou, B., Wu, H. (2019) Bioconcentration, depuration and toxicity of Pb in the presence of titanium dioxide nanoparticles in zebrafish larvae. Aquatic toxicology (Amsterdam, Netherlands). 214:105257
|
Hu, S., Han, J., Yang, L., Li, S., Guo, Y., Zhou, B., Wu, H. (2019) Impact of co-exposure to titanium dioxide nanoparticles and Pb on zebrafish embryos. Chemosphere. 233:579-589
|
|
|
Huang, W., Liu, Z., Yang, F., Zhou, H., Yong, X., Yang, X., Zhou, Y., Xue, L., Zhang, Y., Liu, D., Meng, W., Zhang, W., Zhang, X., Shen, X., Sun, Q., Li, L., Ma, C., Wei, Y., Billadeau, D.D., Mo, X., Jia, D. (2019) Structural and functional studies of TBC1D23 C-terminal domain provide a link between endosomal trafficking and PCH. Proceedings of the National Academy of Sciences of the United States of America. 116(45):22598-22608
|
|
|
Ishitani, T., Hirao, T., Suzuki, M., Isoda, M., Ishitani, S., Harigaya, K., Kitagawa, M., Matsumoto, K., and Itoh, M. (2010) Nemo-like kinase suppresses Notch signalling by interfering with formation of the Notch active transcriptional complex. Nature cell biology. 12(3):278-285
|
|
|
|
|
Itoh, M., Kim, C.-H., Palardy, G., Oda, T., Jiang, Y.-J., Maust, D., Yeo, S.-Y., Lorick, K., Wright, G.J., Ariza-McNaughton, L., Weissman, A.M., Lewis, J., Chandrasekharappa, S.C., and Chitnis, A.B. (2003) Mind Bomb is a ubiquitin ligase that is essential for efficient activation of notch signaling by Delta. Developmental Cell. 4(1):67-82
|
Itoh, M., Kudoh, T., Dedekian, M., Kim, C.-H., and Chitnis, A.J. (2002) A role for iro1 and iro7 in the establishment of an anteroposterior compartment of the ectoderm adjacent to the midbrain-hindbrain boundary. Development (Cambridge, England). 129(10):2317-2327
|
Jeffery, J., Neyt, C., Moore, W., Paterson, S., Bower, N.I., Chenevix-Trench, G., Verkade, H., Hogan, B.M., Khanna, K.K. (2015) Cep55 regulates embryonic growth and development by promoting Akt stability in zebrafish. FASEB journal : official publication of the Federation of American Societies for Experimental Biology. 29(5):1999-2009
|
Jia, M., Teng, M., Tian, S., Yan, J., Meng, Z., Yan, S., Li, R., Zhou, Z., Zhu, W. (2020) Developmental toxicity and neurotoxicity of penconazole enantiomers exposure on zebrafish (Danio rerio). Environmental pollution (Barking, Essex : 1987). 267:115450
|
Jiang, F., Liu, J., Zeng, X., Yu, L., Liu, C., Wang, J. (2018) Tris (2-butoxyethyl) phosphate affects motor behavior and axonal growth in zebrafish (Danio rerio) larvae. Aquatic toxicology (Amsterdam, Netherlands). 198:215-223
|
Jiang, Q., Liu, D., Gong, Y., Wang, Y., Sun, S., Gui, Y., and Song, H. (2009) yap is required for the development of brain, eyes, and neural crest in zebrafish. Biochemical and Biophysical Research Communications. 384(1):114-119
|
Jiao, Z.F., Shang, C.F., Wang, Y.F., Yang, Z., Yang, C., Li, F.N., Xie, J.Z., Pan, J.W., Fu, L., Du, J.L. (2018) All-optical imaging and manipulation of whole-brain neuronal activities in behaving larval zebrafish. Biomedical Optics Express. 9:6154-6169
|
Jie, Z., Li, T., Jia-Yun, H., Qiu, J., Ping-Yao, Z., and Houyan, S. (2009) Trans-2-Phenylcyclopropylamine induces nerve cells apoptosis in zebrafish mediated by depression of LSD1 activity. Brain research bulletin. 80(1-2):79-84
|
Jin, W., Dai, Y., Li, F., Zhu, L., Huang, Z., Liu, W., Li, J., Zhang, M., Du, J., Zhang, W., Wen, Z. (2019) Dysregulation of Microglial Function Contributes to Neuronal Impairment in Mcoln1a-Deficient Zebrafish. iScience. 13:391-401
|
|
|
Jin, Y., Zhu, Z., Wang, Y., Yang, E., Feng, X., Fu, Z. (2016) The fungicide imazalil induces developmental abnormalities and alters locomotor activity during early developmental stages in zebrafish. Chemosphere. 153:455-461
|
|
|
Jo, M., Chung, A.Y., Yachie, N., Seo, M., Jeon, H., Nam, Y., Seo, Y., Kim, E., Zhong, Q., Vidal, M., Park, H.C., Roth, F., Suk, K. (2017) Yeast genetic interaction screen of human genes associated with amyotrophic lateral sclerosis: identification of MAP2K5 kinase as a potential drug target. Genome research. 27(9):1487-1500
|
|
|
Julich, D., Hwee, Lim C., Round, J., Nicolaije, C., Schroeder, J., Davies, A., Geisler, R., Lewis, J., Jiang, Y.J., Holley, S.A., Tübingen 2000 Screen Consortium. (2005) beamter/deltaC and the role of Notch ligands in the zebrafish somite segmentation, hindbrain neurogenesis and hypochord differentiation. Developmental Biology. 286(2):391-404
|
|
|
|
|
Kappel, J.M., Förster, D., Slangewal, K., Shainer, I., Svara, F., Donovan, J.C., Sherman, S., Januszewski, M., Baier, H., Larsch, J. (2022) Visual recognition of social signals by a tectothalamic neural circuit. Nature. 608(7921):146-152
|
|
|
|
|
Keller, J.P., Marvin, J.S., Lacin, H., Lemon, W.C., Shea, J., Kim, S., Lee, R.T., Koyama, M., Keller, P.J., Looger, L.L. (2021) In vivo glucose imaging in multiple model organisms with an engineered single-wavelength sensor. Cell Reports. 35:109284
|
|
|
Kim, C.-H., Y.-K. Bae, Y. Yamanaka, S. Yamashita, T. Shimizu, R. Fujii, H.-C. Park, S.-Y. Yeo, T.-L. Huh, M. Hibi, and T. Hirano (1997) Overexpression of neurogenin induces ectopic expression of HuC in zebrafish. Neuroscience letters. 239:113-116
|
Kim, C.H., Oda, T., Itoh, M., Jiang, D., Artinger, K.B., Chandrasekharappa, S.C., Driever, W., and Chitnis, A.B. (2000) Repressor activity of Headless/Tcf3 is essential for vertebrate head formation. Nature. 407(6806):913-916
|
Kim, C.H., Ueshima, E., Muraoka, O., Tanaka, H., Yeo, S.Y., Huh, T.L., and Miki, N. (1996) Zebrafish elav/huC homologue as a very early neuronal marker. Neuroscience letters. 216(2):109-112
|
Kim, C.K., Miri, A., Leung, L.C., Berndt, A., Mourrain, P., Tank, D.W., Burdine, R.D. (2014) Prolonged, brain-wide expression of nuclear-localized GCaMP3 for functional circuit mapping. Frontiers in neural circuits. 8:138
|
Kim, D.H., Kim, J., Marques, J.C., Grama, A., Hildebrand, D.G.C., Gu, W., Li, J.M., Robson, D.N. (2017) Pan-neuronal calcium imaging with cellular resolution in freely swimming zebrafish. Nature Methods. 14(11):1107-1114
|
Kim, H.G., Kim, H.T., Leach, N.T., Lan, F., Ullmann, R., Silahtaroglu, A., Kurth, I., Nowka, A., Seong, I.S., Shen, Y., Talkowski, M.E., Ruderfer, D., Lee, J.H., Glotzbach, C., Ha, K., Kjaergaard, S., Levin, A.V., Romeike, B.F., Kleefstra, T., Bartsch, O., Elsea, S.H., Jabs, E.W., Macdonald, M.E., Harris, D.J., Quade, B.J., Ropers, H.H., Shaffer, L.G., Kutsche, K., Layman, L.C., Tommerup, N., Kalscheuer, V.M., Shi, Y., Morton, C.C., Kim, C.H., and Gusella, J.F. (2012) Translocations Disrupting PHF21A in the Potocki-Shaffer-Syndrome Region Are Associated with Intellectual Disability and Craniofacial Anomalies. American journal of human genetics. 91(1):56-72
|
Kim, H.T., Kim, E.H., Yoo, K.W., Lee, M.S., Choi, J.H., Park, H.C., Yeo, S.Y., Lee, D.S., and Kim, C.H. (2008) Isolation and expression analysis of Alzheimer's disease-related gene xb51 in zebrafish. Developmental Dynamics : an official publication of the American Association of Anatomists. 237(12):3921-3926
|
Kim, H.T., So, J.H., Jung, S.H., Ahn, D.G., Koh, W., Kim, N.S., Kim, S.H., Lee, S., and Kim, C.H. (2011) Cug2 is essential for normal mitotic control and CNS development in zebrafish. BMC Developmental Biology. 11(1):49
|
Kim, J., Kim, C.Y., Song, J., Oh, H., Kim, C.H., Park, J.H. (2016) Trimethyltin chloride inhibits neuronal cell differentiation in zebrafish embryo neurodevelopment. Neurotoxicology and teratology. 54:29-35
|
Kim, J., Oh, H., Ryu, B., Kim, U., Lee, J.M., Jung, C.R., Kim, C.Y., Park, J.H. (2018) Triclosan affects axon formation in the neural development stages of zebrafish embryos (Danio rerio). Environmental pollution (Barking, Essex : 1987). 236:304-312
|
Kim, S., Stroski, K.M., Killeen, G., Smitherman, C., Simcik, M.F., Brooks, B.W. (2020) 8:8 Perfluoroalkyl phosphinic acid affects neurobehavioral development, thyroid disruption, and DNA methylation in developing zebrafish. The Science of the total environment. 736:139600
|
|
|
Kizil, C., Dudczig, S., Kyritsis, N., Machate, A., Blaesche, J., Kroehne, V., and Brand, M. (2012) The chemokine receptor cxcr5 regulates the regenerative neurogenesis response in the adult zebrafish brain. Neural Development. 7(1):27
|
Ko, C.Y., Tsai, M.Y., Tseng, W.F., Cheng, C.H., Huang, C.R., Wu, J.S., Chung, H.Y., Hsieh, C.S., Sun, C.K., Hwang, S.P., Yuh, C.H., Huang, C.J., Pai, T.W., Tzou, W.S., and Hu, C.H. (2011) Integration of CNS survival and differentiation by HIF2α. Cell death and differentiation. 18(11):1757-70
|
Kok, F.O., Oster, E., Mentzer, L., Hsieh, J.C., Henry, C.A., and Sirotkin, H.I. (2007) The role of the SPT6 chromatin remodeling factor in zebrafish embryogenesis. Developmental Biology. 307(2):214-226
|
Kok, F.O., Taibi, A., Wanner, S.J., Xie, X., Moravec, C.E., Love, C.E., Prince, V.E., Mumm, J.S., and Sirotkin, H.I. (2012) Zebrafish rest regulates developmental gene expression but not neurogenesis. Development (Cambridge, England). 139(20):3838-3848
|
Kolb, J., Tsata, V., John, N., Kim, K., Möckel, C., Rosso, G., Kurbel, V., Parmar, A., Sharma, G., Karandasheva, K., Abuhattum, S., Lyraki, O., Beck, T., Müller, P., Schlüßler, R., Frischknecht, R., Wehner, A., Krombholz, N., Steigenberger, B., Beis, D., Takeoka, A., Blümcke, I., Möllmert, S., Singh, K., Guck, J., Kobow, K., Wehner, D. (2023) Small leucine-rich proteoglycans inhibit CNS regeneration by modifying the structural and mechanical properties of the lesion environment. Nature communications. 14:68146814
|
Kong, H.J., Ryu, J.H., Kim, J., Kim, J.W., Seong, B., Whang, I., Park, J.Y., Yeo, S.Y. (2018) Generation of motor neurons requires spatiotemporal coordination between retinoic acid and Mib-mediated Notch signaling. Animal cells and systems. 22:76-81
|
Koudelka, S., Voas, M.G., Almeida, R.G., Baraban, M., Soetaert, J., Meyer, M.P., Talbot, W.S., Lyons, D.A. (2016) Individual Neuronal Subtypes Exhibit Diversity in CNS Myelination Mediated by Synaptic Vesicle Release. Current biology : CB. 26(11):1447-55
|
Kramer, A.C., Carthage, J., Berry, Y., Gurdziel, K., Cook, T.A., Thummel, R. (2023) A comparative analysis of gene and protein expression in chronic and acute models of photoreceptor degeneration in adult zebrafish. Frontiers in cell and developmental biology. 11:12332691233269
|
|
|
Kuil, L.E., Kakiailatu, N.J.M., Windster, J.D., Bindels, E., Zink, J.T.M., van der Zee, G., Hofstra, R.M.W., Shepherd, I.T., Melotte, V., Alves, M.M. (2023) Unbiased characterization of the larval zebrafish enteric nervous system at a single cell transcriptomic level. iScience. 26:107070107070
|
|
|
Kwon, V., Cai, P., Dixon, C.T., Hamlin, V., Spencer, C.G., Rojas, A.M., Hamilton, M., Shiau, C.E. (2022) Peripheral NOD-like receptor deficient inflammatory macrophages trigger neutrophil infiltration into the brain disrupting daytime locomotion. Communications biology. 5:464
|
Lange, C., Rost, F., Machate, A., Reinhardt, S., Lesche, M., Weber, A., Kuscha, V., Dahl, A., Rulands, S., Brand, M. (2020) Single cell sequencing of radial glia progeny reveals diversity of newborn neurons in the adult zebrafish brain. Development (Cambridge, England). 147(1):
|
|
|
|
|
Lewellis, S.W., Nagelberg, D., Subedi, A., Staton, A., Leblanc, M., Giraldez, A., and Knaut, H. (2013) Precise SDF1-mediated cell guidance is achieved through ligand clearance and microRNA-mediated decay. The Journal of cell biology. 200(3):337-355
|
Lewis, J.L., Bonner, J., Modrell, M., Ragland, J.W., Moon, R.T., Dorsky, R.I., and Raible, D.W. (2004) Reiterated Wnt signaling during zebrafish neural crest development. Development (Cambridge, England). 131(6):1299-1308
|
Li, X., Zhou, W., Li, X., Gao, M., Ji, S., Tian, W., Ji, G., Du, J., Hao, A. (2019) SOX19b regulates the premature neuronal differentiation of neural stem cells through EZH2-mediated histone methylation in neural tube development of zebrafish. Stem Cell Research & Therapy. 10:389
|
|
|
Liao, W.H., Cheng, C.H., Hung, K.S., Chiu, W.T., Chen, G.D., Hwang, P.P., Hwang, S.P., Kuan, Y.S., and Huang, C.J. (2013) Protein tyrosine phosphatase receptor type O (Ptpro) regulates cerebellar formation during zebrafish development through modulating Fgf signaling. Cellular and molecular life sciences : CMLS. 70(13):2367-81
|
|
|
|
|
Lin, Y.L., Tsai, Y.J., Liu, Y.F., Cheng, Y.C., Hung, C.M., Lee, Y.J., Pan, H., and Li, C. (2013) The Critical Role of Protein Arginine Methyltransferase prmt8 in Zebrafish Embryonic and Neural Development Is Non-Redundant with Its Paralogue prmt1. PLoS One. 8(3):e55221
|
|
|
Liu, C.X., Li, C.Y., Hu, C.C., Wang, Y., Lin, J., Jiang, Y.H., Li, Q., Xu, X. (2018) CRISPR/Cas9-induced shank3b mutant zebrafish display autism-like behaviors.. Molecular autism. 9:23
|
Liu, D., Yang, F., Liu, Z., Wang, J., Huang, W., Meng, W., Billadeau, D.D., Sun, Q., Mo, X., Jia, D. (2020) Structure of TBC1D23 N-terminus reveals a novel role for rhodanese domain. PLoS Biology. 18:e3000746
|
Liu, L.Y., Lin, M.H., Lai, Z.Y., Jiang, J.P., Huang, Y.C., Jao, L.E., Chuang, Y.J. (2016) Motor neuron-derived Thsd7a is essential for zebrafish vascular development via the Notch-dll4 signaling pathway. Journal of Biomedical Science. 23:59
|
Liu, T., Shi, Y., Chan, M.T.V., Peng, G., Zhang, Q., Sun, X., Zhu, Z., Xie, Y., Sham, K.W.Y., Li, J., Liu, X., Ho, I.H.T., Gin, T., Lu, Z., Wu, W.K.K., Cheng, C.H.K. (2018) Developmental protein kinase C hyper-activation results in microcephaly and behavioral abnormalities in zebrafish. Translational psychiatry. 8:232
|
Liu, T.L., Upadhyayula, S., Milkie, D.E., Singh, V., Wang, K., Swinburne, I.A., Mosaliganti, K.R., Collins, Z.M., Hiscock, T.W., Shea, J., Kohrman, A.Q., Medwig, T.N., Dambournet, D., Forster, R., Cunniff, B., Ruan, Y., Yashiro, H., Scholpp, S., Meyerowitz, E.M., Hockemeyer, D., Drubin, D.G., Martin, B.L., Matus, D.Q., Koyama, M., Megason, S.G., Kirchhausen, T., Betzig, E. (2018) Observing the cell in its native state: Imaging subcellular dynamics in multicellular organisms. Science (New York, N.Y.). 360(6386):
|
|
|
Lovin, L.M., Kim, S., Taylor, R.B., Scarlett, K.R., Langan, L.M., Chambliss, C.K., Chatterjee, S., Scott, J.T., Brooks, B.W. (2021) Differential influences of (±) anatoxin-a on photolocomotor behavior and gene transcription in larval zebrafish and fathead minnows. Environmental sciences Europe. 33(1):
|
Lucas, M.E., Muller, F., Rudiger, R., Henion, P.D., and Rohrer, H. (2006) The bHLH transcription factor hand2 is essential for noradrenergic differentiation of sympathetic neurons. Development (Cambridge, England). 133(20):4015-4024
|
|
|
Luo, N., Li, H., Xiang, B., Qiao, L., He, J., Ji, Y., Liu, Y., Li, S., Lu, R., Li, Y., Meng, W., Wu, Y., Xu, H., Mo, X. (2016) Syndecan-4 modulates the proliferation of neural cells and the formation of CaP axons during zebrafish embryonic neurogenesis. Scientific Reports. 6:25300
|
Marisca, R., Hoche, T., Agirre, E., Hoodless, L.J., Barkey, W., Auer, F., Castelo-Branco, G., Czopka, T. (2020) Functionally distinct subgroups of oligodendrocyte precursor cells integrate neural activity and execute myelin formation. Nature Neuroscience. 23(3):363-374
|
Marquart, G.D., Tabor, K.M., Brown, M., Strykowski, J.L., Varshney, G.K., LaFave, M.C., Mueller, T., Burgess, S.M., Higashijima, S., Burgess, H.A. (2015) A 3D Searchable Database of Transgenic Zebrafish Gal4 and Cre Lines for Functional Neuroanatomy Studies. Frontiers in neural circuits. 9:78
|
Marvin, J.S., Shimoda, Y., Magloire, V., Leite, M., Kawashima, T., Jensen, T.P., Kolb, I., Knott, E.L., Novak, O., Podgorski, K., Leidenheimer, N.J., Rusakov, D.A., Ahrens, M.B., Kullmann, D.M., Looger, L.L. (2019) A genetically encoded fluorescent sensor for in vivo imaging of GABA. Nature Methods. 16(8):763-770
|
Massarsky, A., Abdel, A., Glazer, L., Levin, E.D., Di Giulio, R.T. (2018) Neurobehavioral effects of 1,2-propanediol in zebrafish (Danio rerio). Neurotoxicology. 65:111-124
|
Massarsky, A., Jayasundara, N., Glazer, L., Levin, E.D., Prasad, G.L., Di Giulio, R.T. (2018) Outcomes of developmental exposure to total particulate matter from cigarette smoke in zebrafish (Danio rerio). Neurotoxicology. 68:101-114
|
Meireles, A.M., Shiau, C.E., Guenther, C.A., Sidik, H., Kingsley, D.M., Talbot, W.S. (2014) The Phosphate Exporter xpr1b Is Required for Differentiation of Tissue-Resident Macrophages. Cell Reports. 8(6):1659-67
|
Mensch, S., Baraban, M., Almeida, R., Czopka, T., Ausborn, J., El Manira, A., Lyons, D. A. (2015) Synaptic vesicle release regulates myelin sheath number of individual oligodendrocytes in vivo. Nature Neuroscience. 18:628-630
|
|
|
|
|
|
|
|
|
Mishima, Y., Abreu-Goodger, C., Staton, A.A., Stahlhut, C., Shou, C., Cheng, C., Gerstein, M., Enright, A.J., and Giraldez, A.J. (2009) Zebrafish miR-1 and miR-133 shape muscle gene expression and regulate sarcomeric actin organization. Genes & Development. 23(5):619-632
|
Mizoguchi, T., Okita, M., Minami, Y., Fukunaga, M., Maki, A., Itoh, M. (2023) Age-dependent dysfunction of the cerebrovascular system in the zebrafish telencephalon. Experimental gerontology. 178:112206
|
|
|
|
|
Mruk, K., Ciepla, P., Piza, P.A., Alnaqib, M.A., Chen, J.K. (2020) Targeted cell ablation in zebrafish using optogenetic transcriptional control. Development (Cambridge, England). 147(12):
|
Mu, Y., Bennett, D.V., Rubinov, M., Narayan, S., Yang, C.T., Tanimoto, M., Mensh, B.D., Looger, L.L., Ahrens, M.B. (2019) Glia Accumulate Evidence that Actions Are Futile and Suppress Unsuccessful Behavior. Cell. 178(1):27-43.e19
|
|
|
Muraoka, O., Ichikawa, H., Shi, H., Okumura, S., Taira, E., Higuchi, H., Hirano, T., Hibi, M., and Miki, N. (2000) Kheper, a Novel ZFH/δEF1 Family Member, Regulates the Development of the Neuroectoderm of Zebrafish (Danio rerio). Developmental Biology. 228(1):29-40
|
|
|
Müllenbroich, M.C., Turrini, L., Silvestri, L., Alterini, T., Gheisari, A., Vanzi, F., Sacconi, L., Pavone, F.S. (2018) Bessel Beam Illumination Reduces Random and Systematic Errors in Quantitative Functional Studies Using Light-Sheet Microscopy. Frontiers in Cellular Neuroscience. 12:315
|
Nakajima, H., Ishikawa, H., Yamamoto, T., Chiba, A., Fukui, H., Sako, K., Fukumoto, M., Mattonet, K., Kwon, H.B., Hui, S.P., Dobreva, G.D., Kikuchi, K., Helker, C.S.M., Stainier, D.Y.R., Mochizuki, N. (2023) Endoderm-derived islet1-expressing cells differentiate into endothelial cells to function as the vascular HSPC niche in zebrafish. Developmental Cell. 58(3):224-238.e7
|
Nakajima, H., Yamamoto, K., Agarwala, S., Terai, K., Fukui, H., Fukuhara, S., Ando, K., Miyazaki, T., Yokota, Y., Schmelzer, E., Belting, H.G., Affolter, M., Lecaudey, V., Mochizuki, N. (2017) Flow-Dependent Endothelial YAP Regulation Contributes to Vessel Maintenance. Developmental Cell. 40:523-536.e6
|
Nakano, Y., Fujita, M., Ogino, K., Saint-Amant, L., Kinoshita, T., Oda, Y., and Hirata, H. (2010) Biogenesis of GPI-anchored proteins is essential for surface expression of sodium channels in zebrafish Rohon-Beard neurons to respond to mechanosensory stimulation. Development (Cambridge, England). 137(10):1689-1698
|
|
|
Nguyen, V.H., Trout, J., Connors, SA.., Andermann, P., Weinberg, E., and Mullins, M.C. (2000) Dorsal and intermediate neuronal cell types of the spinal cord are established by a BMP signaling pathway. Development (Cambridge, England). 127(6):1209-1220
|
Nornes, S., Newman, M., Wells, S., Verdile, G., Martins, R.N., and Lardelli, M. (2009) Independent and cooperative action of Psen2 with Psen1 in zebrafish embryos. Experimental cell research. 315(16):2791-2801
|
O'Brown, N.M., Patel, N.B., Hartmann, U., Klein, A.M., Gu, C., Megason, S.G. (2023) The secreted neuronal signal spock1 promotes blood-brain barrier development. Developmental Cell. 58(17):1534-1547.e6
|
Oates, A.C., Wollberg, P., Pratt, S.J., Paw, B.H., Johnson, S.L., Ho, R.K., Postlethwait, J.H., Zon, L.I., and Wilks, A.F. (1999) Zebrafish stat3 is expressed in restricted tissues during embryogenesis and stat1 rescues cytokine signaling in a STAT1-deficient human cell line. Developmental Dynamics : an official publication of the American Association of Anatomists. 215(4):352-370
|
Osorio-Méndez, D., Miller, A., Begeman, I.J., Kurth, A., Hagle, R., Rolph, D., Dickson, A.L., Chen, C.H., Halloran, M., Poss, K.D., Kang, J. (2022) Voltage-gated sodium channel scn8a is required for innervation and regeneration of amputated adult zebrafish fins. Proceedings of the National Academy of Sciences of the United States of America. 119:e2200342119
|
|
|
Panier, T., Romano, S.A., Olive, R., Pietri, T., Sumbre, G., Candelier, R., and Debrégeas, G. (2013) Fast functional imaging of multiple brain regions in intact zebrafish larvae using Selective Plane Illumination Microscopy. Frontiers in neural circuits. 7:65
|
Paquet, D., Bhat, R., Sydow, A., Mandelkow, E.M., Berg, S., Hellberg, S., Fälting, J., Distel, M., Köster, R.W., Schmid, B., and Haass, C. (2009) A zebrafish model of tauopathy allows in vivo imaging of neuronal cell death and drug evaluation. J. Clin. Invest.. 119(5):1382-1395
|
Park, H.-C., Hong, S.-K., Kim, H.-S., Kim, S.-H., Yoon, E.-J., Kim, C.-H., Miki, N., and Huh, T.-L. (2000) Structural comparison of zebrafish Elav/Hu and their differential expressions during neurogenesis. Neuroscience letters. 279(2):81-84
|
Park, H.-C., Kim, C.-H., Bae, Y.-K., Yee, S.-Y., Kim, S.-H., Hong, S.-K., Shin, J., Yoo, K.-W., Hibi, M., Hirano, T., Miki, N., Chitnis, A.B., and Huh, T.-L. (2000) Analysis of upstream elements in the HuC promoter leads to the establishment of transgenic zebrafish with fluorescent neurons. Developmental Biology. 227(2):279-293
|
Park, S.-H., Yeo, S.-Y., Yoo, K.-W., Hong, S.-K., Lee, S., Rhee, M., Chitnis, A.B., and Kim, C.-H. (2003) Zath3, a neural basic helix-loop-helix gene, regulates early neurogenesis in the zebrafish. Biochemical and Biophysical Research Communications. 308(1):184-190
|
Pei, D., Luther, W., Wang, W., Paw, B.H., Stewart, R.A., and George, R.E. (2013) Distinct Neuroblastoma-associated Alterations of PHOX2B Impair Sympathetic Neuronal Differentiation in Zebrafish Models. PLoS Genetics. 9(6):e1003533
|
Pellegrini, E., Mouriec, K., Anglade, I., Menuet, A., Le Page, Y., Gueguen, M.M., Marmignon, M.H., Brion, F., Pakdel, F., and Kah, O. (2007) Identification of aromatase-positive radial glial cells as progenitor cells in the ventricular layer of the forebrain in zebrafish. The Journal of comparative neurology. 501(1):150-167
|
Picton, L.D., Bertuzzi, M., Pallucchi, I., Fontanel, P., Dahlberg, E., Björnfors, E.R., Iacoviello, F., Shearing, P.R., El Manira, A. (2021) A spinal organ of proprioception for integrated motor action feedback. Neuron. 109(7):1188-1201.e7
|
Pineda, R.H., Svoboda, K.R., Wright, M.A., Taylor, A.D., Novak, A.E., Gamse, J.T., Eisen, J.S., and Ribera, A.B. (2006) Knockdown of Nav1.6a Na+ channels affects zebrafish motoneuron development. Development (Cambridge, England). 133(19):3827-3836
|
Pogoda, H.M., von der Hardt, S., Herzog, W., Kramer, C., Schwarz, H., and Hammerschmidt, M. (2006) The proneural gene ascl1a is required for endocrine differentiation and cell survival in the zebrafish adenohypophysis. Development (Cambridge, England). 133(6):1079-1089
|
Postlethwait, J.H, Yan, Y.-L., Gates, M.A., Horne, S., Amores, A., Brownlie, A., Donovan, A., Egan, E.S., Force, A., Gong, Z., Goutel, C., Fritz, A., Kelsh, R., Knapik, E., Liao, E., Paw, B., Ransom, D., Singer, A., Thomson, M., Abduljabbar, T.S., Yelick, P., Beier, D., Joly, J.-S., Larhammar, D., Rosa, F., Westerfield, M., Zon, L.I., Johnson, S.L., and Talbot, W.S. (1998) Vertebrate genome evolution and the zebrafish gene map. Nature Genetics. 18:345-349
|
|
|
Prendergast, A.E., Jim, K.K., Marnas, H., Desban, L., Quan, F.B., Djenoune, L., Laghi, V., Hocquemiller, A., Lunsford, E.T., Roussel, J., Keiser, L., Lejeune, F.X., Dhanasekar, M., Bardet, P.L., Levraud, J.P., van de Beek, D., Vandenbroucke-Grauls, C.M.J.E., Wyart, C. (2023) CSF-contacting neurons respond to Streptococcus pneumoniae and promote host survival during central nervous system infection. Current biology : CB. 33(5):940-956.e10
|
Pérez-Schuster, V., Kulkarni, A., Nouvian, M., Romano, S.A., Lygdas, K., Jouary, A., Dipoppa, M., Pietri, T., Haudrechy, M., Candat, V., Boulanger-Weill, J., Hakim, V., Sumbre, G. (2016) Sustained Rhythmic Brain Activity Underlies Visual Motion Perception in Zebrafish. Cell Reports. 17:1098-1112
|
|
|
|
|
Randlett, O., Wee, C.L., Naumann, E.A., Nnaemeka, O., Schoppik, D., Fitzgerald, J.E., Portugues, R., Lacoste, A.M., Riegler, C., Engert, F., Schier, A.F. (2015) Whole-brain activity mapping onto a zebrafish brain atlas. Nature Methods. 12:1039-1046
|
Ricci, P., Marchetti, M., Sorelli, M., Turrini, L., Resta, F., Gavryusev, V., de Vito, G., Sancataldo, G., Vanzi, F., Silvestri, L., Pavone, F.S. (2022) Power-effective scanning with AODs for 3D optogenic applications. Journal of biophotonics. 15(4):e202100256
|
Ristori, E., Lopez-Ramirez, M.A., Narayanan, A., Hill-Teran, G., Moro, A., Calvo, C.F., Thomas, J.L., Nicoli, S. (2015) A Dicer-miR-107 Interaction Regulates Biogenesis of Specific miRNAs Crucial for Neurogenesis. Developmental Cell. 32(5):546-60
|
|
|
|
|
|
|
Roy-Carson, S., Natukunda, K., Chou, H.C., Pal, N., Farris, C., Schneider, S.Q., Kuhlman, J.A. (2017) Defining the transcriptomic landscape of the developing enteric nervous system and its cellular environment. BMC Genomics. 18:290
|
Russek-Blum, N., Gutnick, A., Nabel-Rosen, H., Blechman, J., Staudt, N., Dorsky, R.I., Houart, C., and Levkowitz, G. (2008) Dopaminergic neuronal cluster size is determined during early forebrain patterning. Development (Cambridge, England). 135(20):3401-3413
|
Ryu, J.H., Kong, H.J., Park, J.Y., Lim, K.E., An, C.M., Lee, J., Yeo, S.Y. (2015) Generation of Late-Born Neurons in the Ventral Spinal Cord requires the coordination of Retinoic Acid and Notch signaling. Neuroscience letters. 602:95-8
|
|
|
|
|
Ryu, S., Mahler, J., Acampora, D., Holzschuh, J., Erhardt, S., Omodei, D., Simeone, A., and Driever, W. (2007) Orthopedia Homeodomain Protein Is Essential for Diencephalic Dopaminergic Neuron Development. Current biology : CB. 17(10):873-880
|
Samarut, E., Gaudin, C., Hughes, S., Gillet, B., de Bernard, S., Jouve, P.E., Buffat, L., Allot, A., Lecompte, O., Berekelya, L., Rochette-Egly, C., and Laudet, V. (2014) Retinoic acid receptor subtype-specific transcriptotypes in the early zebrafish embryo. Molecular endocrinology (Baltimore, Md.). 28(2):260-272
|
Samarut, É., Swaminathan, A., Riché, R., Liao, M., Hassan-Abdi, R., Renault, S., Allard, M., Dufour, L., Cossette, P., Soussi-Yanicostas, N., Drapeau, P. (2018) γ-Aminobutyric acid receptor alpha 1 subunit loss of function causes genetic generalized epilepsy by impairing inhibitory network neurodevelopment. Epilepsia. 59(11):2061-2074
|
|
|
|
|
|
|
Saunders, L.M., Mishra, A.K., Aman, A.J., Lewis, V.M., Toomey, M.B., Packer, J.S., Qiu, X., McFaline-Figueroa, J.L., Corbo, J.C., Trapnell, C., Parichy, D.M. (2019) Thyroid hormone regulates distinct paths to maturation in pigment cell lineages. eLIFE. 8:
|
|
|
Seidl, M.J., Scharre, S., Posset, R., Druck, A.C., Epp, F., Okun, J.G., Dimitrov, B., Hoffmann, G.F., Kölker, S., Zielonka, M. (2023) ASS1 deficiency is associated with impaired neuronal differentiation in zebrafish larvae. Molecular genetics and metabolism. 141:108097108097
|
Seipold, S., Priller, F.C., Goldsmith, P., Harris, W.A., Baier, H., and Abdelilah-Seyfried, S. (2009) Non-SMC condensin I complex proteins control chromosome segregation and survival of proliferating cells in the zebrafish neural retina. BMC Developmental Biology. 9:40
|
|
|
Shen, D., Chen, J., Liu, D., Shen, M., Wang, X., Wu, Y., Ke, S., Macdonald, R.L., Zhang, Q. (2020) The GABRG2 F343L allele causes spontaneous seizures in a novel transgenic zebrafish model that can be treated with suberanilohydroxamic acid (SAHA). Annals of translational medicine. 8:1560
|
|
|
Shi, Q., Wang, M., Shi, F., Yang, L., Guo, Y., Feng, C., Liu, J., Zhou, B. (2018) Developmental neurotoxicity of triphenyl phosphate in zebrafish larvae. Aquatic toxicology (Amsterdam, Netherlands). 203:80-87
|
|
|
|
|
Shih, D.F., Hsiao, C.D., Min, M.Y., Lai, W.S., Yang, C.W., Lee, W.T., and Lee, S.J. (2013) Aromatic L-Amino Acid Decarboxylase (AADC) Is Crucial for Brain Development and Motor Functions. PLoS One. 8(8):e71741
|
Shin, U., Choi, Y., Ko, H.S., Myung, K., Lee, S., Cheon, C.K., Lee, Y. (2023) A heterozygous mutation in UBE2H in a patient with developmental delay leads to an aberrant brain development in zebrafish. Human genomics. 17:4444
|
|
|
|
|
Sifuentes-Dominguez, L.F., Li, H., Llano, E., Liu, Z., Singla, A., Patel, A.S., Kathania, M., Khoury, A., Norris, N., Rios, J.J., Starokadomskyy, P., Park, J.Y., Gopal, P., Liu, Q., Tan, S., Chan, L., Ross, T., Harrison, S., Venuprasad, K., Baker, L.A., Jia, D., Burstein, E. (2019) SCGN deficiency results in colitis susceptibility. eLIFE. 8:
|
Sohn, H., Kim, Y.S., Kim, H.T., Kim, C.H., Cho, E.W., Kang, H.Y., Kim, N.S., Kim, C.H., Ryu, S.E., Lee, J.H., and Ko, J.H. (2006) Ganglioside GM3 is involved in neuronal cell death. FASEB journal : official publication of the Federation of American Societies for Experimental Biology. 20(8):1248-1250
|
Soto, X., Biga, V., Kursawe, J., Lea, R., Doostdar, P., Thomas, R., Papalopulu, N. (2020) Dynamic properties of noise and Her6 levels are optimized by miR-9, allowing the decoding of the Her6 oscillator. The EMBO journal. 39(12):e103558
|
|
|
Stevenson, T.J., Trinh, T., Kogelschatz, C., Fujimoto, E., Lush, M.E., Piotrowski, T., Brimley, C.J., and Bonkowsky, J.L. (2012) Hypoxia Disruption of Vertebrate CNS Pathfinding through EphrinB2 Is Rescued by Magnesium. PLoS Genetics. 8(4):e1002638
|
Stewart, R.A., Arduini, B.L., Berghmans, S., George, R.E., Kanki, J.P., Henion, P.D., and Look, A.T. (2006) Zebrafish foxd3 is selectively required for neural crest specification, migration and survival. Developmental Biology. 292(1):174-188
|
Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J., and Marra,M.A. (2002) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proceedings of the National Academy of Sciences of the United States of America. 99(26):16899-903
|
Sugiyama, K., Nishide, K., Matsuo, H., Okigawa, S., Okano, M., Ishitani, T., Matsumoto, K., and Itoh, M. (2010) Delta1 family members are involved in filopodial actin formation and neuronal cell migration independent of Notch signaling. Biochemical and Biophysical Research Communications. 398(1):118-124
|
Sui, J., Zhan, L., Ji, S., Wu, W., Chen, Y., Yun, F., Liang, W., Wang, J., Cao, M., Shen, D., Zhang, Q. (2024) Differential inflammation responses determine the variable phenotypes of epilepsy induced by GABRG2 mutations. CNS neuroscience & therapeutics. 30:e14583e14583
|
Sun, F., Zeng, J., Jing, M., Zhou, J., Feng, J., Owen, S.F., Luo, Y., Li, F., Wang, H., Yamaguchi, T., Yong, Z., Gao, Y., Peng, W., Wang, L., Zhang, S., Du, J., Lin, D., Xu, M., Kreitzer, A.C., Cui, G., Li, Y. (2018) A Genetically Encoded Fluorescent Sensor Enables Rapid and Specific Detection of Dopamine in Flies, Fish, and Mice. Cell. 174:481-496.e19
|
Sun, L., Xu, W., Peng, T., Chen, H., Ren, L., Tan, H., Xiao, D., Qian, H., Fu, Z. (2016) Developmental exposure of zebrafish larvae to organophosphate flame retardants causes neurotoxicity. Neurotoxicology and teratology. 55:16-22
|
Sun, S., Liu, Z., Li, X., Jia, J., Zhang, G., Yang, C., Jiang, Q., Zou, Y. (2020) Characterization of a nap1l1 transgenic reporter in zebrafish. Gene. 735:144388
|
Suo, G., Cao, X., Zheng, Y., Li, H., Zhang, Q., Tang, J., Wu, Y. (2021) A de novo nonsense mutation of STXBP1 causes early-onset epileptic encephalopathy. Epilepsy & behavior : E&B. 123:108245
|
Suzuki, T., Hirai, Y., Uehara, T., Ohga, R., Kosaki, K., Kawahara, A. (2021) Involvement of the zebrafish trrap gene in craniofacial development. Scientific Reports. 11:24166
|
Swaminathan, A., Bouffard, M., Liao, M., Ryan, S., Bennion Callister, J., Pickering-Brown, S.M., Armstrong, G.A.B., Drapeau, P. (2018) Expression of C9orf72-related dipeptides impairs motor function in a vertebrate model. Human molecular genetics. 27(10):1754-1762
|
|
|
|
|
|
|
|
|
Tao, B., Hu, H., Mitchell, K., Chen, J., Jia, H., Zhu, Z., Trudeau, V.L., Hu, W. (2018) Secretogranin-II plays a critical role in zebrafish neurovascular modeling. Journal of molecular cell biology. 10(5):388-401
|
Tao, L., Moreno-Smith, M., Ibarra-García-Padilla, R., Milazzo, G., Drolet, N.A., Hernandez, B.E., Oh, Y.S., Patel, I., Kim, J.J., Zorman, B., Patel, T., Kamal, A.H.M., Zhao, Y., Hicks, J., Vasudevan, S.A., Putluri, N., Coarfa, C., Sumazin, P., Perini, G., Parchem, R.J., Uribe, R.A., Barbieri, E. (2021) CHAF1A Blocks Neuronal Differentiation and Promotes Neuroblastoma Oncogenesis via Metabolic Reprogramming. Advanced science (Weinheim, Baden-Wurttemberg, Germany). 8(19):e2005047
|
Tao, T., Sondalle, S.B., Shi, H., Zhu, S., Perez-Atayde, A.R., Peng, J., Baserga, S.J., Look, A.T. (2017) The pre-rRNA processing factor DEF is rate limiting for the pathogenesis of MYCN-driven neuroblastoma. Oncogene. 36(27):3852-3867
|
|
|
Tiraboschi, E., Martina, S., van der Ent, W., Grzyb, K., Gawel, K., Cordero-Maldonado, M.L., Poovathingal, S.K., Heintz, S., Satheesh, S.V., Brattespe, J., Xu, J., Suster, M., Skupin, A., Esguerra, C.V. (2020) New insights into the early mechanisms of epileptogenesis in a zebrafish model of Dravet syndrome. Epilepsia. 61(3):549-560
|
|
|
|
|
Tse, W.K., Eisenhaber, B., Ho, S.H., Ng, Q., Eisenhaber, F., and Jiang, Y.J. (2009) Genome-wide loss-of-function analysis of deubiquitylating enzymes for zebrafish development. BMC Genomics. 10:637
|
|
|
|
|
Umeda, R., Teranishi, H., Hada, K., Shimizu, N., Shiraishi, H., Urushibata, H., Shaohong, L., Shide, M., Apolinario, M.E.C., Higa, R., Shikano, K., Shin, T., Mimata, H., Hikida, T., Hanada, T., Hanada, R. (2022) Vrk2 deficiency elicits aggressive behavior in female zebrafish. Genes to cells : devoted to molecular & cellular mechanisms. 27(4):254-265
|
Vandestadt, C., Vanwalleghem, G.C., Khabooshan, M.A., Douek, A.M., Castillo, H.A., Li, M., Schulze, K., Don, E., Stamatis, S.A., Ratnadiwakara, M., Änkö, M.L., Scott, E.K., Kaslin, J. (2021) RNA-induced inflammation and migration of precursor neurons initiates neuronal circuit regeneration in zebrafish. Developmental Cell. 56:2364-2380.e8
|
Veldman, M.B., Rios-Galdamez, Y., Lu, X.H., Gu, X., Qin, W., Li, S., Yang, X.W., Lin, S. (2015) The N17 domain mitigates nuclear toxicity in a novel zebrafish Huntington's disease model. Molecular neurodegeneration. 10:67
|
|
|
Vladimirov, N., Wang, C., Höckendorf, B., Pujala, A., Tanimoto, M., Mu, Y., Yang, C.T., Wittenbach, J.D., Freeman, J., Preibisch, S., Koyama, M., Keller, P.J., Ahrens, M.B. (2018) Brain-wide circuit interrogation at the cellular level guided by online analysis of neuronal function. Nature Methods. 15:1117-1125
|
Wagner, D.E., Weinreb, C., Collins, Z.M., Briggs, J.A., Megason, S.G., Klein, A.M. (2018) Single-cell mapping of gene expression landscapes and lineage in the zebrafish embryo. Science (New York, N.Y.). 360(6392):981-987
|
|
|
Wang, D., Xu, S., Pant, P., Redington, E., Soltanian-Zadeh, S., Farsiu, S., Gong, Y. (2019) Hybrid light-sheet and light-field microscope for high resolution and large volume neuroimaging. Biomedical Optics Express. 10:6595-6610
|
Wang, L., Wang, X., Wang, L., Yousaf, M., Li, J., Zuo, M., Yang, Z., Gou, D., Bao, B., Li, L., Xiang, N., Jia, H., Xu, C., Chen, Q., Wang, Q.K. (2017) Identification of a new adtrp1-tfpi regulatory axis for the specification of primitive myelopoiesis and definitive hematopoiesis.. FASEB journal : official publication of the Federation of American Societies for Experimental Biology. 32(1):183-194
|
Wang, L., Yan, R., Yang, Q., Li, H., Zhang, J., Shimoda, Y., Kato, K., Yamanaka, K., An, Y. (2020) Role of GH/IGF axis in arsenite-induced developmental toxicity in zebrafish embryos. Ecotoxicology and environmental safety. 201:110820
|
Wang, W., Yang, N., Wang, L., Zhu, Y., Chu, X., Xu, W., Li, Y., Xu, Y., Gao, L., Zhang, B., Zhang, G., Sun, Q., Wang, W., Wang, Q., Zhang, W., Chen, D. (2024) The TET-Sall4-BMP regulatory axis controls craniofacial cartilage development. Cell Reports. 43:113873113873
|
|
|
Watchon, M., Yuan, K.C., Mackovski, N., Svahn, A.J., Cole, N.J., Goldsbury, C., Rinkwitz, S., Becker, T.S., Nicholson, G.A., Laird, A.S. (2017) Calpain inhibition is protective in Machado-Joseph disease zebrafish due to induction of autophagy. The Journal of neuroscience : the official journal of the Society for Neuroscience. 37(32):7782-7794
|
|
|
Wen, H., Hubbard, J.M., Rakela, B., Linhoff, M.W., Mandel, G., and Brehm, P. (2013) Synchronous and asynchronous modes of synaptic transmission utilize different calcium sources. eLIFE. 2:e01206
|
Wild, R., Klems, A., Takamiya, M., Hayashi, Y., Strähle, U., Ando, K., Mochizuki, N., van Impel, A., Schulte-Merker, S., Krueger, J., Preau, L., le Noble, F. (2017) Neuronal sFlt1 and Vegfaa determine venous sprouting and spinal cord vascularization. Nature communications. 8:13991
|
Wilson, A.L., Shen, Y.C., Babb-Clendenon, S.G., Rostedt, J., Liu, B., Barald, K.F., Marrs, J.A., and Liu, Q. (2007) Cadherin-4 plays a role in the development of zebrafish cranial ganglia and lateral line system. Developmental Dynamics : an official publication of the American Association of Anatomists. 236(3):893-902
|
|
|
Woods, I.G., Wilson, C., Friedlander, B., Chang, P., Reyes, D.K., Nix, R., Kelly, P.D., Chu, F., Postlethwait, J.H., and Talbot, W.S. (2005) The zebrafish gene map defines ancestral vertebrate chromosomes. Genome research. 15(9):1307-1314
|
Wu, B.K., Yuan, R.Y., Chang, Y.P., Lien, H.W., Chen, T.S., Chien, H.C., Tong, T.S., Tsai, H.P., Fang, C.L., Liao, Y.F., Chang, C.C., Chen, R.P., Huang, C.J. (2016) Epicatechin isolated from Tripterygium wilfordii extract reduces tau-GFP-induced neurotoxicity in zebrafish embryo through the activation of Nrf2. Biochemical and Biophysical Research Communications. 477(2):283-9
|
Wu, B.K., Yuan, R.Y., Lien, H.W., Hung, C.C., Hwang, P.P., Chen, R.P., Chang, C.C., Liao, Y.F., Huang, C.J. (2016) Multiple signaling factors and drugs alleviate neuronal death induced by expression of human and zebrafish tau proteins in vivo. Journal of Biomedical Science. 23:25
|
Wu, Q., Yan, W., Cheng, H., Liu, C., Hung, T.C., Guo, X., Li, G. (2017) Parental transfer of microcystin-LR induced transgenerational effects of developmental neurotoxicity in zebrafish offspring. Environmental pollution (Barking, Essex : 1987). 231:471-478
|
Wu, T.S., Cheng, Y.C., Chen, P.J., Huang, Y.T., Yu, F.Y., Liu, B.H. (2018) Exposure to aflatoxin B1 interferes with locomotion and neural development in zebrafish embryos and larvae. Chemosphere. 217:905-913
|
|
|
Xi, J., Zhang, Z., Wang, Z., Wu, Q., He, Y., Xu, Y., Ding, Z., Zhao, H., Da, H., Zhang, F., Zhao, H., Fang, J. (2022) Hinokitiol functions as a ferroptosis inhibitor to confer neuroprotection. Free radical biology & medicine. 190:202-215
|
Xia, J., Kang, Z., Xue, Y., Ding, Y., Gao, S., Zhang, Y., Lv, P., Wang, X., Ma, D., Wang, L., Han, J.J., Liu, F. (2021) A single-cell resolution developmental atlas of hematopoietic stem and progenitor cell expansion in zebrafish. Proceedings of the National Academy of Sciences of the United States of America. 118(14):
|
|
|
Xiao, Y., Hu, M., Lin, Q., Zhang, T., Li, S., Shu, L., Song, X., Xu, X., Meng, W., Li, X., Xu, H., Mo, X. (2023) Dopey2 and Pcdh7 orchestrate the development of embryonic neural stem cells/ progenitors in zebrafish. iScience. 26:106273106273
|
|
|
|
|
Xu, B., Tang, X., Jin, M., Zhang, H., Du, L., Yu, S., He, J. (2020) Unifying Developmental Programs for Embryonic and Post-Embryonic Neurogenesis in the Zebrafish Retina. Development (Cambridge, England). 147(12):
|
Xu, H., Shao, X., Zhang, Z., Zou, Y., Chen, Y., Han, S., Wang, S., Wu, X., Yang, L., and Chen, Z. (2013) Effects of Di-n-butyl Phthalate and Diethyl Phthalate on Acetylcholinesterase Activity and Neurotoxicity Related Gene Expression in Embryonic Zebrafish. Bulletin of environmental contamination and toxicology. 91(6):635-9
|
Xu, Y., Liu, J., Tian, Y., Wang, Z., Song, Z., Li, K., Zhang, S., Zhao, H. (2022) Wnt/β-Catenin Signaling Pathway Is Strongly Implicated in Cadmium-Induced Developmental Neurotoxicity and Neuroinflammation: Clues from Zebrafish Neurobehavior and In Vivo Neuroimaging. International Journal of Molecular Sciences. 23(19):
|
Yang, E., Zwart, M.F., James, B., Rubinov, M., Wei, Z., Narayan, S., Vladimirov, N., Mensh, B.D., Fitzgerald, J.E., Ahrens, M.B. (2022) A brainstem integrator for self-location memory and positional homeostasis in zebrafish. Cell. 185:50115027.e205011-5027.e20
|
Yang, Y.H.C., Briant, L.J.B., Raab, C.A., Mullapudi, S.T., Maischein, H.M., Kawakami, K., Stainier, D.Y.R. (2022) Innervation modulates the functional connectivity between pancreatic endocrine cells. eLIFE. 11:
|
Yang, Z., Mei, L., Xia, F., Luo, Q., Fu, L., Gong, H. (2015) Dual-slit confocal light sheet microscopy for in vivo whole-brain imaging of zebrafish. Biomedical Optics Express. 6:1797-1811
|
Yao, X., Liu, X., Zhang, Y., Li, Y., Zhao, C., Yao, S., Wei, Y.Q. (2017) Gene Therapy of Adult Neuronal Ceroid Lipofuscinoses with CRISPR/Cas9 in Zebrafish. Human gene therapy. 28(7):588-597
|
Yao, Y., Baronio, D., Chen, Y.C., Jin, C., Panula, P. (2023) The Roles of Histamine Receptor 1 (hrh1) in Neurotransmitter System Regulation, Behavior, and Neurogenesis in Zebrafish. Molecular neurobiology. 60(11):6660-6675
|
Yin, W., Liu, D., Liu, N., Xu, L., Li, S., Lin, S., Shu, X., Pei, D. (2012) SNX17 regulates Notch pathway and pancreas development through the retromer-dependent recycling of Jag1. Cell regeneration (London, England). 1:4
|
Yoo, K.W., Thiruvarangan, M., Jeong, Y.M., Lee, M.S., Maddirevula, S., Rhee, M., Bae, Y.K., Kim, H.G., Kim, C.H. (2017) Mind Bomb-Binding Partner RanBP9 Plays a Contributory Role in Retinal Development. Molecules and cells. 40(4):271-279
|
|
|
|
|
Zarowny, L., Aggarwal, A., Rutten, V.M.S., Kolb, I., Project, T.G., Patel, R., Huang, H.Y., Chang, Y.F., Phan, T., Kanyo, R., Ahrens, M.B., Allison, W.T., Podgorski, K., Campbell, R.E. (2020) A bright and high-performance genetically encoded Ca2+ indicator based on mNeonGreen fluorescent protein. ACS sensors. 5(7):1959-1968
|
|
|
|
|
Zhang, Q., Li, F., Li, T., Lin, J., Jian, J., Zhang, Y., Chen, X., Liu, T., Gou, S., Zhang, Y., Liu, X., Ji, Y., Wang, X., Li, Q. (2024) Nomo1 deficiency causes autism-like behavior in zebrafish. EMBO reports. 25(2):570-592
|
Zhang, Q., Yang, X., Liu, J., Song, J., Zhang, S., Chen, L., Zhang, M. (2023) 20S-Protopanaxatriol improves cognitive function of Alzheimer's disease by promoting endogenous neurogenesis. Food & function. 14(9):4191-4203
|
Zhang, Y., Vanmeert, M., Siekierska, A., Ny, A., John, J., Callewaert, G., Lescrinier, E., Dehaen, W., de Witte, P.A.M., Kaminski, R.M. (2017) Inhibition of glutamate decarboxylase (GAD) by ethyl ketopentenoate (EKP) induces treatment-resistant epileptic seizures in zebrafish. Scientific Reports. 7:7195
|
Zhang, Y., Wang, L., Zhou, W., Wang, H., Zhang, J., Deng, S., Li, W., Li, H., Mao, Z., and Ma, D. (2013) Tissue factor pathway inhibitor-2: A novel gene involved in zebrafish central nervous system development. Developmental Biology. 381(1):38-49
|
|
|
Zhou, J., Liang, W., Wang, J., Chen, J., Liu, D., Wang, X., Wu, Y., Zhang, Q., Shen, D. (2021) An epileptic encephalopathy associated GABRG2 missense mutation leads to pre- and postsynaptic defects in zebrafish. Human molecular genetics. 31(19):3216-3230
|
Zhou, W., Ghersi, J.J., Ristori, E., Semanchik, N., Prendergast, A., Zhang, R., Carneiro, P., Baldissera, G., Sessa, W.C., Nicoli, S. (2024) Akt is a mediator of artery specification during zebrafish development. Development (Cambridge, England). 151(17):
|
Zhou, X., Xiao, C., Li, Y., Shang, Y., Yin, D., Li, S., Xiang, B., Lu, R., Ji, Y., Wu, Y., Meng, W., Zhu, H., Liu, J., Hu, H., Mo, X., Xu, H. (2018) Mid1ip1b modulates apical reorientation of non-centrosomal microtubule organizing center in epithelial cells. Journal of genetics and genomics = Yi chuan xue bao. 45(8):433-442
|
Zhou, Z., Peng, X., Chen, J., Wu, X., Wang, Y., Hong, Y. (2016) Identification of zebrafish magnetoreceptor and cryptochrome homologs. Science China. Life sciences. 59(12):1324-1331
|
Zhu, P., Narita, Y., Bundschuh, S.T., Fajardo, O., Schärer, Y.P., Chattopadhyaya, B., Bouldoires, E.A., Stepien, A.E., Deisseroth, K., Arber, S., Sprengel, R., Rijli, F.M., and Friedrich, R.W. (2009) Optogenetic Dissection of Neuronal Circuits in Zebrafish using Viral Gene Transfer and the Tet System. Frontiers in neural circuits. 3:21
|
Zhu, W., Yao, X., Liang, Y., Liang, D., Song, L., Jing, N., Li, J., Wang, G. (2015) Mediator Med23 deficiency enhances neural differentiation of murine embryonic stem cells through modulating BMP signaling. Development (Cambridge, England). 142(3):465-76
|
Zhu, X.Y., Wu, Y.Y., Xia, B., Dai, M.Z., Huang, Y.F., Yang, H., Li, C.Q., Li, P. (2020) Fenobucarb-induced developmental neurotoxicity and mechanisms in zebrafish. Neurotoxicology. 79:11-19
|
|
|
