Abe, K., Shimada, A., Tayama, S., Nishikawa, H., Kaneko, T., Tsuda, S., Karaiwa, A., Matsui, T., Ishitani, T., Takeda, H. (2019) Horizontal Boundary Cells, a Special Group of Somitic Cells, Play Crucial Roles in the Formation of Dorsoventral Compartments in Teleost Somite. Cell Reports. 27:928-939.e4
|
|
|
Alexander, C., Zuniga, E., Blitz, I.L., Wada, N., Le Pabic, P., Javidan, Y., Zhang, T., Cho, K.W., Crump, J.G., and Schilling, T.F. (2011) Combinatorial roles for BMPs and Endothelin 1 in patterning the dorsal-ventral axis of the craniofacial skeleton. Development (Cambridge, England). 138(23):5135-5146
|
|
|
Anderson, R.A., Schwalbach, K.T., Mui, S.R., LeClair, E.E., Topczewska, J.M., Topczewski, J. (2020) Zebrafish models of skeletal dysplasia induced by cholesterol biosynthesis deficiency. Disease models & mechanisms. 13(6):
|
Anelli, V., Villefranc, J.A., Chhangawala, S., Martinez-McFaline, R., Riva, E., Nguyen, A., Verma, A., Bareja, R., Chen, Z., Scognamiglio, T., Elemento, O., Houvras, Y. (2017) Oncogenic BRAF disrupts thyroid morphogenesis and function via Twist expression. eLIFE. 6
|
Angueyra, J.M., Kunze, V.P., Patak, L.K., Kim, H., Kindt, K., Li, W. (2023) Transcription factors underlying photoreceptor diversity. eLIFE. 12:
|
Anguita-Salinas, C., Sánchez, M., Morales, R.A., Ceci, M.L., Rojas-Benítez, D., Allende, M.L. (2019) Cellular Dynamics during Spinal Cord Regeneration in Larval Zebrafish. Developmental neuroscience. 41(1-2):112-122
|
Antinucci, P., Dumitrescu, A., Deleuze, C., Morley, H.J., Leung, K., Hagley, T., Kubo, F., Baier, H., Bianco, I.H., Wyart, C. (2020) A calibrated optogenetic toolbox of stable zebrafish opsin lines. eLIFE. 9:
|
|
|
Arribat, Y., Grepper, D., Lagarrigue, S., Richard, J., Gachet, M., Gut, P., Amati, F. (2019) Mitochondria in Embryogenesis: An Organellogenesis Perspective. Frontiers in cell and developmental biology. 7:282
|
Arturo Gutierrez-Triana, J., Herget, U., Castillo-Ramirez, L.A., Lutz, M., Yeh, C.M., De Marco, R.J., Ryu, S. (2015) Manipulation of interrenal cell function in developing zebrafish using genetically targeted ablation and an optogenetic tool. Endocrinology. 156(9):3394-401
|
|
|
Athanasiadis, E.I., Botthof, J.G., Andres, H., Ferreira, L., Lio, P., Cvejic, A. (2017) Single-cell RNA-sequencing uncovers transcriptional states and fate decisions in haematopoiesis. Nature communications. 8:2045
|
Avagyan, S., Henninger, J.E., Mannherz, W.P., Mistry, M., Yoon, J., Yang, S., Weber, M.C., Moore, J.L., Zon, L.I. (2021) Resistance to inflammation underlies enhanced fitness in clonal hematopoiesis. Science (New York, N.Y.). 374:768-772
|
Avagyan, S., Weber, M.C., Ma, S., Prasad, M., Mannherz, W.P., Yang, S., Buenrostro, J.D., Zon, L.I. (2021) Single-cell ATAC-seq reveals GATA2-dependent priming defect in myeloid and a maturation bottleneck in lymphoid lineages. Blood advances. 5:2673-2686
|
|
|
Beerman, R.W., Matty, M.A., Au, G.G., Looger, L.L., Choudhury, K.R., Keller, P.J., Tobin, D.M. (2015) Direct In Vivo Manipulation and Imaging of Calcium Transients in Neutrophils Identify a Critical Role for Leading-Edge Calcium Flux. Cell Reports. 13(10):2107-17
|
Behra, M., Gallardo, V.E., Bradsher, J., Torrado, A., Elkahloun, A., Idol, J., Sheehy, J., Zonies, S., Xu, L., Shaw, K.M., Satou, C., Higashijima, S.I., Weinstein, B.M., and Burgess, S.M. (2012) Transcriptional signature of accessory cells in the lateral line, using the Tnk1bp1:EGFP transgenic zebrafish line. BMC Developmental Biology. 12(1):6
|
Berg, R.D., Levitte, S., O'Sullivan, M.P., O'Leary, S.M., Cambier, C.J., Cameron, J., Takaki, K.K., Moens, C.B., Tobin, D.M., Keane, J., Ramakrishnan, L. (2016) Lysosomal Disorders Drive Susceptibility to Tuberculosis by Compromising Macrophage Migration. Cell. 165:139-152
|
|
|
Bertozzi, A., Wu, C.C., Nguyen, P.D., Vasudevarao, M.D., Mulaw, M.A., Koopman, C.D., de Boer, T.P., Bakkers, J., Weidinger, G. (2020) Is zebrafish heart regeneration "complete"? Lineage-restricted cardiomyocytes proliferate to pre-injury numbers but some fail to differentiate in fibrotic hearts. Developmental Biology. 471:106-118
|
Black, H.D., Xu, W., Hortle, E., Roberston, S.I., Britton, W.J., Kaur, A., New, E.J., Witting, P.K., Chami, B., Oehlers, S.H. (2019) The cyclic nitroxide antioxidant 4-methoxy-TEMPO decreases mycobacterial burden in vivo through host and bacterial targets. Free radical biology & medicine. 135:157-166
|
Bogoch, Y., Jamieson-Lucy, A., Vejnar, C.E., Levy, K., Giraldez, A.J., Mullins, M.C., Elkouby, Y.M. (2022) Stage Specific Transcriptomic Analysis and Database for Zebrafish Oogenesis. Frontiers in cell and developmental biology. 10:826892
|
Born, L.I., Andree, T., Frank, S., Hübner, J., Link, S., Langheine, M., Charlet, A., Esser, J.S., Brehm, R., Moser, M. (2022) eif4ebp3l-A New Affector of Zebrafish Angiogenesis and Heart Regeneration?. International Journal of Molecular Sciences. 23(17)
|
Brewer, W.J., Xet-Mull, A.M., Yu, A., Sweeney, M.I., Walton, E.M., Tobin, D.M. (2022) Macrophage NFATC2 mediates angiogenic signaling during mycobacterial infection. Cell Reports. 41:111817111817
|
Cadiz Diaz, A., Schmidt, N.A., Yamazaki, M., Hsieh, C.J., Lisse, T.S., Rieger, S. (2022) Coordinated NADPH oxidase/hydrogen peroxide functions regulate cutaneous sensory axon de- and regeneration. Proceedings of the National Academy of Sciences of the United States of America. 119:e2115009119
|
|
|
|
|
Camiolo, G., Barbato, A., Giallongo, C., Vicario, N., Romano, A., Parrinello, N.L., Parenti, R., Sandoval, J.C., García-Moreno, D., Lazzarino, G., Avola, R., Palumbo, G.A., Mulero, V., Li Volti, G., Tibullo, D., Di Raimondo, F. (2020) Iron regulates myeloma cell/macrophage interaction and drives resistance to bortezomib. Redox Biology. 36:101611
|
|
|
Chen, A., Chiu, C.N., Mosser, E.A., Kahn, S., Spence, R., Prober, D.A. (2016) QRFP and Its Receptors Regulate Locomotor Activity and Sleep in Zebrafish. The Journal of neuroscience : the official journal of the Society for Neuroscience. 36(6):1823-40
|
Chen, C.H., Puliafito, A., Cox, B.D., Primo, L., Fang, Y., Di Talia, S., Poss, K.D. (2016) Multicolor Cell Barcoding Technology for Long-Term Surveillance of Epithelial Regeneration in Zebrafish. Developmental Cell. 36:668-80
|
|
|
|
|
Cholan, P.M., Han, A., Woodie, B.R., Watchon, M., Kurz, A.R., Laird, A.S., Britton, W.J., Ye, L., Holmes, Z.C., McCann, J.R., David, L.A., Rawls, J.F., Oehlers, S.H. (2020) Conserved anti-inflammatory effects and sensing of butyrate in zebrafish. Gut microbes. 12:1-11
|
Chow, D.M., Sinefeld, D., Kolkman, K.E., Ouzounov, D.G., Akbari, N., Tatarsky, R., Bass, A., Xu, C., Fetcho, J.R. (2020) Deep three-photon imaging of the brain in intact adult zebrafish. Nature Methods. 17(6):605-608
|
Cirrincione, A.M., Pellegrini, A.D., Dominy, J.R., Benjamin, M.E., Utkina-Sosunova, I., Lotti, F., Jergova, S., Sagen, J., Rieger, S. (2020) Paclitaxel-induced peripheral neuropathy is caused by epidermal ROS and mitochondrial damage through conserved MMP-13 activation. Scientific Reports. 10:3970
|
Compagnon, J., Barone, V., Rajshekar, S., Kottmeier, R., Pranjic-Ferscha, K., Behrndt, M., Heisenberg, C. (2014) The Notochord Breaks Bilateral Symmetry by Controlling Cell Shapes in the Zebrafish Laterality Organ. Developmental Cell. 31:774-783
|
Cook, Z.T., Brockway, N.L., Tobias, Z.J.C., Pajarla, J., Boardman, I.S., Ippolito, H., Nkombo-Nkoula, S., Weissman, T.A. (2018) Combining near-infrared fluorescence with Brainbow to visualize expression of specific genes within a multicolor context. Molecular biology of the cell. 30(4):491-505
|
Cronan, M.R., Beerman, R.W., Rosenberg, A.F., Saelens, J.W., Johnson, M.G., Oehlers, S.H., Sisk, D.M., Jurcic Smith, K.L., Medvitz, N.A., Miller, S.E., Trinh, L.A., Fraser, S.E., Madden, J.F., Turner, J., Stout, J.E., Lee, S., Tobin, D.M. (2016) Macrophage Epithelial Reprogramming Underlies Mycobacterial Granuloma Formation and Promotes Infection. Immunity. 45:861-876
|
Cronan, M.R., Hughes, E.J., Brewer, W.J., Viswanathan, G., Hunt, E.G., Singh, B., Mehra, S., Oehlers, S.H., Gregory, S.G., Kaushal, D., Tobin, D.M. (2021) A non-canonical type 2 immune response coordinates tuberculous granuloma formation and epithelialization. Cell. 184(7):1757-1774.e14
|
Cronan, M.R., Matty, M.A., Rosenberg, A.F., Blanc, L., Pyle, C.J., Espenschied, S.T., Rawls, J.F., Dartois, V., Tobin, D.M. (2018) An explant technique for high-resolution imaging and manipulation of mycobacterial granulomas. Nature Methods. 15:1098-1107
|
|
|
Cruz, I.A., Kappedal, R., Mackenzie, S.M., Hailey, D.W., Hoffman, T.L., Schilling, T.F., Raible, D.W. (2015) Robust regeneration of adult zebrafish lateral line hair cells reflects continued precursor pool maintenance. Developmental Biology. 402(2):229-38
|
Cutrale, F., Trivedi, V., Trinh, L.A., Chiu, C.L., Choi, J.M., Artiga, M.S., Fraser, S.E. (2017) Hyperspectral phasor analysis enables multiplexed 5D in vivo imaging. Nature Methods. 14(2):149-152
|
|
|
|
|
|
|
|
|
de Oliveira, S., Houseright, R.A., Graves, A.L., Golenberg, N., Korte, B.G., Miskolci, V., Huttenlocher, A. (2018) Metformin modulates innate immune-mediated inflammation and early progression of NAFLD-associated hepatocellular carcinoma in zebrafish. Journal of hepatology. 70(4):710-721
|
|
|
DeRossi, C., Vacaru, A., Rafiq, R., Cinaroglu, A., Imrie, D., Nayar, S., Baryshnikova, A., Milev, M.P., Stanga, D., Kadakia, D., Gao, N., Chu, J., Freeze, H.H., Lehrman, M.A., Sacher, M., Sadler, K.C. (2016) trappc11 is required for protein glycosylation in zebrafish and humans. Molecular biology of the cell. 27(8):1220-34
|
Deveau, C., Jiao, X., Suzuki, S.C., Krishnakumar, A., Yoshimatsu, T., Hejtmancik, J.F., Nelson, R.F. (2020) Thyroid hormone receptor beta mutations alter photoreceptor development and function in Danio rerio (zebrafish). PLoS Genetics. 16:e1008869
|
Di Donato, V., De Santis, F., Auer, T., Testa, N., Sánchez-Iranzo, H., Mercader, N., Concordet, J.P., Del Bene, F. (2016) 2C-Cas9: a versatile tool for clonal analysis of gene function. Genome research. 26(5):681-92
|
Dogra, D., Ahuja, S., Kim, H.T., Rasouli, S.J., Stainier, D.Y.R., Reischauer, S. (2017) Opposite effects of Activin type 2 receptor ligands on cardiomyocyte proliferation during development and repair. Nature communications. 8:1902
|
|
|
Donà, E., Barry, J.D., Valentin, G., Quirin, C., Khmelinskii, A., Kunze, A., Durdu, S., Newton, L.R., Fernandez-Minan, A., Huber, W., Knop, M., and Gilmour, D. (2013) Directional tissue migration through a self-generated chemokine gradient. Nature. 503(7475):285-9
|
Dray, N., Mancini, L., Binshtok, U., Cheysson, F., Supatto, W., Mahou, P., Bedu, S., Ortica, S., Than-Trong, E., Krecsmarik, M., Herbert, S., Masson, J.B., Tinevez, J.Y., Lang, G., Beaurepaire, E., Sprinzak, D., Bally-Cuif, L. (2021) Dynamic spatiotemporal coordination of neural stem cell fate decisions occurs through local feedback in the adult vertebrate brain. Cell Stem Cell. 28(8):1457-1472.e12
|
Durdu, S., Iskar, M., Revenu, C., Schieber, N., Kunze, A., Bork, P., Schwab, Y., Gilmour, D. (2014) Luminal signalling links cell communication to tissue architecture during organogenesis. Nature. 515(7525):120-4
|
|
|
Eckert, P., Knickmeyer, M.D., Schütz, L., Wittbrodt, J., Heermann, S. (2019) Morphogenesis and axis specification occur in parallel during optic cup and optic fissure formation, differentially modulated by BMP and Wnt. Open Biology. 9:180179
|
|
|
|
|
Espenschied, S.T., Cronan, M.R., Matty, M.A., Mueller, O., Redinbo, M.R., Tobin, D.M., Rawls, J.F. (2019) Epithelial delamination is protective during pharmaceutical-induced enteropathy. Proceedings of the National Academy of Sciences of the United States of America. 116(34):16961-16970
|
Esterberg, R., Linbo, T., Pickett, S.B., Wu, P., Ou, H.C., Rubel, E.W., Raible, D.W. (2016) Mitochondrial calcium uptake underlies ROS generation during aminoglycoside-induced hair cell death. The Journal of Clinical Investigation. 126(9):3556-66
|
Fan, J., Hale, V.L., Lelieveld, L.T., Whitworth, L.J., Busch-Nentwich, E.M., Troll, M., Edelstein, P.H., Cox, T.M., Roca, F.J., Aerts, J.M.F.G., Ramakrishnan, L. (2023) Gaucher disease protects against tuberculosis. Proceedings of the National Academy of Sciences of the United States of America. 120:e2217673120e2217673120
|
|
|
|
|
Feng, D., Chen, Z., Yang, K., Miao, S., Xu, B., Kang, Y., Xie, H., Zhao, C. (2017) The cytoplasmic tail of rhodopsin triggers rapid rod degeneration in kinesin-2 mutants. The Journal of biological chemistry. 292(42):17375-17386
|
Fischer, B., Metzger, M., Richardson, R., Knyphausen, P., Ramezani, T., Franzen, R., Schmelzer, E., Bloch, W., Carney, T.J., and Hammerschmidt, M. (2014) p53 and TAp63 promote keratinocyte proliferation and differentiation in breeding tubercles of the zebrafish. PLoS Genetics. 10(1):e1004048
|
|
|
Forner-Piquer, I., Faucherre, A., Byram, J., Blaquiere, M., de Bock, F., Gamet-Payrastre, L., Ellero-Simatos, S., Audinat, E., Jopling, C., Marchi, N. (2020) Differential impact of dose-range glyphosate on locomotor behavior, neuronal activity, glio-cerebrovascular structures, and transcript regulations in zebrafish larvae. Chemosphere. 267:128986
|
Forner-Piquer, I., Klement, W., Gangarossa, G., Zub, E., de Bock, F., Blaquiere, M., Maurice, T., Audinat, E., Faucherre, A., Lasserre, F., Ellero-Simatos, S., Gamet-Payrastre, L., Jopling, C., Marchi, N. (2021) Varying modalities of perinatal exposure to a pesticide cocktail elicit neurological adaptations in mice and zebrafish. Environmental pollution (Barking, Essex : 1987). 278:116755
|
Fowler, D.K., Stewart, S., Seredick, S., Eisen, J.S., Stankunas, K., Washbourne, P. (2016) A MultiSite Gateway Toolkit for Rapid Cloning of Vertebrate Expression Constructs with Diverse Research Applications. PLoS One. 11:e0159277
|
Frame, J.M., Kubaczka, C., Long, T.L., Esain, V., Soto, R.A., Hachimi, M., Jing, R., Shwartz, A., Goessling, W., Daley, G.Q., North, T.E. (2020) Metabolic Regulation of Inflammasome Activity Controls Embryonic Hematopoietic Stem and Progenitor Cell Production. Developmental Cell. 55(2):133-149.e6
|
Freifeld, L., Odstrcil, I., Förster, D., Ramirez, A., Gagnon, J.A., Randlett, O., Costa, E.K., Asano, S., Celiker, O.T., Gao, R., Martin-Alarcon, D.A., Reginato, P., Dick, C., Chen, L., Schoppik, D., Engert, F., Baier, H., Boyden, E.S. (2017) Expansion microscopy of zebrafish for neuroscience and developmental biology studies. Proceedings of the National Academy of Sciences of the United States of America. 114(50):E10799-E10808
|
Freudenblum, J., Iglesias, J.A., Hermann, M., Walsen, T., Wilfinger, A., Meyer, D., Kimmel, R.A. (2018) In vivo imaging of emerging endocrine cells reveals a requirement for PI3K-regulated motility in pancreatic islet morphogenesis.. Development (Cambridge, England). 145(3)
|
|
|
Fukuda, R., Aharonov, A., Ong, Y.T., Stone, O.A., El-Brolosy, M., Maischein, H.M., Potente, M., Tzahor, E., Stainier, D.Y. (2019) Metabolic modulation regulates cardiac wall morphogenesis in zebrafish. eLIFE. 8:
|
Fukuda, R., Gunawan, F., Beisaw, A., Jimenez-Amilburu, V., Maischein, H.M., Kostin, S., Kawakami, K., Stainier, D.Y. (2017) Proteolysis regulates cardiomyocyte maturation and tissue integration. Nature communications. 8:14495
|
Fukuda, R., Gunawan, F., Ramadass, R., Beisaw, A., Konzer, A., Mullapudi, S.T., Gentile, A., Maischein, H.M., Graumann, J., Stainier, D.Y.R. (2019) Mechanical Forces Regulate Cardiomyocyte Myofilament Maturation via the VCL-SSH1-CFL Axis. Developmental Cell. 51(1):62-77.e5
|
Förster, D., Arnold-Ammer, I., Laurell, E., Barker, A.J., Fernandes, A.M., Finger-Baier, K., Filosa, A., Helmbrecht, T.O., Kölsch, Y., Kühn, E., Robles, E., Slanchev, K., Thiele, T.R., Baier, H., Kubo, F. (2017) Genetic targeting and anatomical registration of neuronal populations in the zebrafish brain with a new set of BAC transgenic tools. Scientific Reports. 7:5230
|
|
|
Gauvrit, S., Villasenor, A., Strilic, B., Kitchen, P., Collins, M.M., Marín-Juez, R., Guenther, S., Maischein, H.M., Fukuda, N., Canham, M.A., Brickman, J.M., Bogue, C.W., Jayaraman, P.S., Stainier, D.Y.R. (2018) HHEX is a transcriptional regulator of the VEGFC/FLT4/PROX1 signaling axis during vascular development. Nature communications. 9:2704
|
Giovannone, D., Paul, S., Schindler, S., Arata, C., Farmer, D.T., Patel, P., Smeeton, J., Crump, J.G. (2019) Programmed conversion of hypertrophic chondrocytes into osteoblasts and marrow adipocytes within zebrafish bones. eLIFE. 8:
|
Guesmi, K., Abdeladim, L., Tozer, S., Mahou, P., Kumamoto, T., Jurkus, K., Rigaud, P., Loulier, K., Dray, N., Georges, P., Hanna, M., Livet, J., Supatto, W., Beaurepaire, E., Druon, F. (2018) Dual-color deep-tissue three-photon microscopy with a multiband infrared laser. Light, science & applications. 7:12
|
Han, B., Zhang, Y., Bi, X., Zhou, Y., Krueger, C.J., Hu, X., Zhu, Z., Tong, X., Zhang, B. (2020) Bi-FoRe: an efficient bidirectional knockin strategy to generate pairwise conditional alleles with fluorescent indicators. Protein & cell. 12(1):39-56
|
Hansen, J.N., Kaiser, F., Klausen, C., Stüven, B., Chong, R., Bönigk, W., Mick, D.U., Möglich, A., Jurisch-Yaksi, N., Schmidt, F.I., Wachten, D. (2020) Nanobody-directed targeting of optogenetic tools to study signaling in the primary cilium. eLIFE. 9:
|
Harrison, M.R., Feng, X., Mo, G., Aguayo, A., Villafuerte, J., Yoshida, T., Pearson, C.A., Schulte-Merker, S., Lien, C.L. (2019) Late developing cardiac lymphatic vasculature supports adult zebrafish heart function and regeneration. eLIFE. 8:
|
|
|
Hatzold, J., Wessendorf, H., Pogoda, H.M., Bloch, W., Hammerschmidt, M. (2021) The Kunitz-type serine protease inhibitor Spint2 is required for cellular cohesion, coordinated cell migration and cell survival during zebrafish hatching gland development. Developmental Biology. 476:148-170
|
|
|
|
|
Hortle, E., Johnson, K.E., Johansen, M.D., Nguyen, T., Shavit, J.A., Britton, W.J., Tobin, D.M., Oehlers, S.H. (2019) Thrombocyte inhibition restores protective immunity to mycobacterial infection in zebrafish. The Journal of infectious diseases. 220(3):524-534
|
|
|
|
|
Hu, B., Lelek, S., Spanjaard, B., El-Sammak, H., Simões, M.G., Mintcheva, J., Aliee, H., Schäfer, R., Meyer, A.M., Theis, F., Stainier, D.Y.R., Panáková, D., Junker, J.P. (2022) Origin and function of activated fibroblast states during zebrafish heart regeneration. Nature Genetics. 54(8):1227-1237
|
Hudson, A.M., Lockard, G.M., Namjoshi, O.A., Wilson, J.W., Kindt, K.S., Blough, B.E., Coffin, A.B. (2020) Berbamine Analogs Exhibit Differential Protective Effects From Aminoglycoside-Induced Hair Cell Death. Frontiers in Cellular Neuroscience. 14:234
|
Hughes, S.M., Escaleira, R.C., Wanders, K., Koth, J., Wilkinson, D.G., Xu, Q. (2022) Clonal behaviour of myogenic precursor cells throughout the vertebrate lifespan. Biology Open. 11(8):
|
|
|
Itoh, T., Takeuchi, M., Sakagami, M., Asakawa, K., Sumiyama, K., Kawakami, K., Shimizu, T., Hibi, M. (2020) Gsx2 is required for specification of neurons in the inferior olivary nuclei from Ptf1a-expressing neural progenitors in zebrafish. Development (Cambridge, England). 147(19):
|
|
|
|
|
Jiang, N., Rasmussen, J.P., Clanton, J.A., Rosenberg, M.F., Luedke, K.P., Cronan, M.R., Parker, E.D., Kim, H.J., Vaughan, J.C., Sagasti, A., Parrish, J.Z. (2019) A conserved morphogenetic mechanism for epidermal ensheathment of nociceptive sensory neurites. eLIFE. 8:
|
Jiao, Z.F., Shang, C.F., Wang, Y.F., Yang, Z., Yang, C., Li, F.N., Xie, J.Z., Pan, J.W., Fu, L., Du, J.L. (2018) All-optical imaging and manipulation of whole-brain neuronal activities in behaving larval zebrafish. Biomedical Optics Express. 9:6154-6169
|
Jin, M., Zhang, H., Xu, B., Li, Y., Qin, H., Yu, S., He, J. (2022) Jag2b-Notch3/1b-mediated neuron-to-glia crosstalk controls retinal gliogenesis. EMBO reports. 23(10):e54922
|
|
|
|
|
Kamenev, D., Sunadome, K., Shirokov, M., Chagin, A.S., Singh, A., Irion, U., Adameyko, I., Fried, K., Dyachuk, V. (2021) Schwann cell precursors generate sympathoadrenal system during zebrafish development. Journal of neuroscience research. 99(10):2540-2557
|
Kanow, M.A., Giarmarco, M.M., Jankowski, C.S., Tsantilas, K., Engel, A.L., Du, J., Linton, J.D., Farnsworth, C.C., Sloat, S.R., Rountree, A., Sweet, I.R., Lindsay, K.J., Parker, E.D., Brockerhoff, S.E., Sadilek, M., Chao, J.R., Hurley, J.B. (2017) Biochemical adaptations of the retina and retinal pigment epithelium support a metabolic ecosystem in the vertebrate eye. eLIFE. 6
|
|
|
|
|
Kochhan, E., Lenard, A., Ellertsdottir, E., Herwig, L., Affolter, M., Belting, H.G., and Siekmann, A.F. (2013) Blood Flow Changes Coincide with Cellular Rearrangements during Blood Vessel Pruning in Zebrafish Embryos. PLoS One. 8(10):e75060
|
|
|
Kuri, P., Ellwanger, K., Kufer, T.A., Leptin, M., Bajoghli, B. (2017) A high-sensitivity, bi-directional reporter to monitor NF-κB activity in cell culture and zebrafish in real-time. Journal of Cell Science. 130(3):648-657
|
Kuri, P., Schieber, N.L., Thumberger, T., Wittbrodt, J., Schwab, Y., Leptin, M. (2017) Dynamics of in vivo ASC speck formation. The Journal of cell biology. 216(9):2891-2909
|
|
|
Kölsch, Y., Hahn, J., Sappington, A., Stemmer, M., Fernandes, A.M., Helmbrecht, T.O., Lele, S., Butrus, S., Laurell, E., Arnold-Ammer, I., Shekhar, K., Sanes, J.R., Baier, H. (2020) Molecular classification of zebrafish retinal ganglion cells links genes to cell types to behavior. Neuron. 109(4):645-662.e9
|
|
|
Lai, J.K.H., Collins, M.M., Uribe, V., Jiménez-Amilburu, V., Günther, S., Maischein, H.M., Stainier, D.Y.R. (2018) The Hippo pathway effector Wwtr1 regulates cardiac wall maturation in zebrafish. Development (Cambridge, England). 145(10)
|
Laureano, A.S., Flaherty, K., Hinman, A.M., Jadali, A., Nakamura, T., Higashijima, S.I., Sabaawy, H.E., Kwan, K.Y. (2022) shox2 is required for vestibular statoacoustic neuron development. Biology Open. 11(12):
|
|
|
LeBert, D., Squirrell, J.M., Freisinger, C., Rindy, J., Golenberg, N., Frecentes, G., Gibson, A., Eliceiri, K.W., Huttenlocher, A. (2018) Damage-induced reactive oxygen species regulate vimentin and dynamic collagen-based projections to mediate wound repair.. eLIFE. 7:e30703
|
Lee, D.A., Liu, J., Hong, Y., Lane, J.M., Hill, A.J., Hou, S.L., Wang, H., Oikonomou, G., Pham, U., Engle, J., Saxena, R., Prober, D.A. (2019) Evolutionarily conserved regulation of sleep by epidermal growth factor receptor signaling. Science advances. 5:eaax4249
|
Lee, D.A., Oikonomou, G., Cammidge, T., Andreev, A., Hong, Y., Hurley, H., Prober, D.A. (2020) Neuropeptide VF neurons promote sleep via the serotonergic raphe. eLIFE. 9:
|
|
|
|
|
Levic, D.S., Yamaguchi, N., Wang, S., Knaut, H., Bagnat, M. (2021) Knock-in tagging in zebrafish facilitated by insertion into non-coding regions. Development (Cambridge, England). 148(19):
|
Li, H., Trager, L.E., Liu, X., Hastings, M.H., Xiao, C., Guerra, J., To, S., Li, G., Yeri, A., Rodosthenous, R., Silverman, M.G., Das, S., Ambardekar, A.V., Bristow, M.R., Gonzalez-Rosa, J.M., Rosenzweig, A. (2022) lncExACT1 and DCHS2 Regulate Physiological and Pathological Cardiac Growth. Circulation. 145(16):1218-1233
|
Li, W., Zhang, Y., Han, B., Li, L., Li, M., Lu, X., Chen, C., Lu, M., Zhang, Y., Jia, X., Zhu, Z., Tong, X., Zhang, B. (2019) One-step efficient generation of dual-function conditional knockout and geno-tagging alleles in zebrafish. eLIFE. 8:
|
Lin, X., Zhou, Q., Zhao, C., Lin, G., Xu, J., Wen, Z. (2019) An Ectoderm-Derived Myeloid-like Cell Population Functions as Antigen Transporters for Langerhans Cells in Zebrafish Epidermis. Developmental Cell. 49(4):605-617.e5
|
Lisse, T.S., Middleton, L.J., Pellegrini, A.D., Martin, P.B., Spaulding, E.L., Lopes, O., Brochu, E.A., Carter, E.V., Waldron, A., Rieger, S. (2016) Paclitaxel-induced epithelial damage and ectopic MMP-13 expression promotes neurotoxicity in zebrafish. Proceedings of the National Academy of Sciences of the United States of America. 113(15):E2189-98
|
Liu, H., Duncan, K., Helverson, A., Kumari, P., Mumm, C., Xiao, Y., Carlson, J.C., Darbellay, F., Visel, A., Leslie, E., Breheny, P., Erives, A.J., Cornell, R.A. (2020) Analysis of zebrafish periderm enhancers facilitates identification of a regulatory variant near human KRT8/18. eLIFE. 9:
|
Liu, T.L., Upadhyayula, S., Milkie, D.E., Singh, V., Wang, K., Swinburne, I.A., Mosaliganti, K.R., Collins, Z.M., Hiscock, T.W., Shea, J., Kohrman, A.Q., Medwig, T.N., Dambournet, D., Forster, R., Cunniff, B., Ruan, Y., Yashiro, H., Scholpp, S., Meyerowitz, E.M., Hockemeyer, D., Drubin, D.G., Martin, B.L., Matus, D.Q., Koyama, M., Megason, S.G., Kirchhausen, T., Betzig, E. (2018) Observing the cell in its native state: Imaging subcellular dynamics in multicellular organisms. Science (New York, N.Y.). 360(6386):
|
|
|
Lumaquin, D., Johns, E., Montal, E., Weiss, J.M., Ola, D., Abuhashem, A., White, R.M. (2021) An in vivo reporter for tracking lipid droplet dynamics in transparent zebrafish. eLIFE. 10:
|
Luo, K., Ogawa, M., Ayer, A., Britton, W.J., Stocker, R., Kikuchi, K., Oehlers, S.H. (2022) Zebrafish Heme Oxygenase 1a Is Necessary for Normal Development and Macrophage Migration. Zebrafish. 19(1):7-17
|
Ma, E.Y., Lewis, A., Barabas, P., Stearns, G., Suzuki, S., Krizaj, D., and Brockerhoff, S.E. (2013) Loss of Pde6 reduces cell body Ca2+ transients within photoreceptors. Cell Death & Disease. 4:e797
|
Ma, J., Scott, C.A., Ho, Y.N., Mahabaleshwar, H., Marsay, K.S., Zhang, C., Teow, C.K., Ng, S.S., Zhang, W., Tergaonkar, V., Partridge, L.J., Roy, S., Amaya, E., Carney, T.J. (2021) Matriptase activation of Gq drives epithelial disruption and inflammation via RSK and DUOX. eLIFE. 10:
|
MacDonald, R.B., Randlett, O., Oswald, J., Yoshimatsu, T., Franze, K., Harris, W.A. (2015) Müller glia provide essential tensile strength to the developing retina. The Journal of cell biology. 210:1075-83
|
Mackin, R.D., Frey, R.A., Gutierrez, C., Farre, A.A., Kawamura, S., Mitchell, D.M., Stenkamp, D.L. (2019) Endocrine regulation of multichromatic color vision. Proceedings of the National Academy of Sciences of the United States of America. 116(34):16882-16891
|
Madigan, C.A., Cambier, C.J., Kelly-Scumpia, K.M., Scumpia, P.O., Cheng, T.Y., Zailaa, J., Bloom, B.R., Moody, D.B., Smale, S.T., Sagasti, A., Modlin, R.L., Ramakrishnan, L. (2017) A Macrophage Response to Mycobacterium leprae Phenolic Glycolipid Initiates Nerve Damage in Leprosy. Cell. 170:973-985.e10
|
|
|
Marques, I.J., Ernst, A., Arora, P., Vianin, A., Hetke, T., Sanz-Morejón, A., Naumann, U., Odriozola, A., Langa, X., Andrés-Delgado, L., Zuber, B., Torroja, C., Osterwalder, M., Simões, F., Englert, C., Mercader, N. (2022) WT1 transcription factor impairs cardiomyocyte specification and drives a phenotypic switch from myocardium to epicardium. Development (Cambridge, England). 149(6):
|
Marvel, M., Levavi-Sivan, B., Wong, T.T., Zmora, N., Zohar, Y. (2021) Gnrh2 maintains reproduction in fasting zebrafish through dynamic neuronal projection changes and regulation of gonadotropin synthesis, oogenesis, and reproductive behaviors. Scientific Reports. 11:6657
|
Marín-Juez, R., El-Sammak, H., Helker, C.S.M., Kamezaki, A., Mullapuli, S.T., Bibli, S.I., Foglia, M.J., Fleming, I., Poss, K.D., Stainier, D.Y.R. (2019) Coronary Revascularization During Heart Regeneration Is Regulated by Epicardial and Endocardial Cues and Forms a Scaffold for Cardiomyocyte Repopulation. Developmental Cell. 51:503-515.e4
|
Matty, M.A., Knudsen, D.R., Walton, E.M., Beerman, R.W., Cronan, M.R., Pyle, C.J., Hernandez, R.E., Tobin, D.M. (2019) Potentiation of P2RX7 as a host-directed strategy for control of mycobacterial infection. eLIFE. 8:
|
|
|
McClymont, S.A., Hook, P.W., Soto, A.I., Reed, X., Law, W.D., Kerans, S.J., Waite, E.L., Briceno, N.J., Thole, J.F., Heckman, M.G., Diehl, N.N., Wszolek, Z.K., Moore, C.D., Zhu, H., Akiyama, J.A., Dickel, D.E., Visel, A., Pennacchio, L.A., Ross, O.A., Beer, M.A., McCallion, A.S. (2018) Parkinson-Associated SNCA Enhancer Variants Revealed by Open Chromatin in Mouse Dopamine Neurons. American journal of human genetics. 103(6):874-892
|
McGorty, R., Liu, H., Kamiyama, D., Dong, Z., Guo, S., Huang, B. (2015) Open-top selective plane illumination microscope for conventionally mounted specimens. Optics express. 23:16142-16153
|
Meinecke, L., Sharma, P.P., Du, H., Zhang, L., Nie, Q., Schilling, T.F. (2018) Modeling craniofacial development reveals spatiotemporal constraints on robust patterning of the mandibular arch. PLoS Computational Biology. 14:e1006569
|
|
|
Miyasaka, N., Arganda-Carreras, I., Wakisaka, N., Masuda, M., Sümbül, U., Seung, H.S., Yoshihara, Y. (2014) Olfactory projectome in the zebrafish forebrain revealed by genetic single-neuron labelling. Nature communications. 5:3639
|
Monroe, J.D., Manning, D.P., Uribe, P.M., Bhandiwad, A., Sisneros, J.A., Smith, M.E., Coffin, A.B. (2016) Hearing sensitivity differs between zebrafish lines used in auditory research. Hearing Research. 341:220-231
|
|
|
Morris, J.L., Cross, S.J., Lu, Y., Kadler, K.E., Lu, Y., Dallas, S.L., Martin, P. (2018) Live imaging of collagen deposition during skin development and repair in a collagen I - GFP fusion transgenic zebrafish line. Developmental Biology. 441(1):4-11
|
|
|
Mosaliganti, K.R., Swinburne, I.A., Chan, C.U., Obholzer, N.D., Green, A.A., Tanksale, S., Mahadevan, L., Megason, S.G. (2019) Size control of the inner ear via hydraulic feedback. eLIFE. 8:
|
Mu, Y., Bennett, D.V., Rubinov, M., Narayan, S., Yang, C.T., Tanimoto, M., Mensh, B.D., Looger, L.L., Ahrens, M.B. (2019) Glia Accumulate Evidence that Actions Are Futile and Suppress Unsuccessful Behavior. Cell. 178(1):27-43.e19
|
Mullapudi, S.T., Boezio, G.L.M., Rossi, A., Marass, M., Matsuoka, R.L., Matsuda, H., Helker, C.S.M., Yang, Y.H.C., Stainier, D.Y.R. (2019) Disruption of the pancreatic vasculature in zebrafish affects islet architecture and function. Development (Cambridge, England). 146(21):
|
|
|
Nelson, R.F., Balraj, A., Suresh, T., Elias, L.J., Yoshimatsu, T., Patterson, S.S. (2022) The developmental progression of eight opsin spectral signals recorded from the zebrafish retinal cone layer is altered by the timing and cell type expression of thyroxin receptor β2 (trβ2) gain-of-function transgenes. eNeuro. 9(6):
|
Nicolás-Pérez, M., Kuchling, F., Letelier, J., Polvillo, R., Wittbrodt, J.,Martínez-Morales, J.R. (2016) Analysis of cellular behavior and cytoskeletal dynamics reveal a constriction mechanism driving optic cup morphogenesis. eLIFE. 5
|
Nishiya, N., Murai, M., Hosoda, A., Yonezawa, H., Omori, N. (2019) Bucillamine Prevents Afatinib-Mediated Inhibition of Epidermal Growth Factor Receptor Signaling. Pharmaceuticals (Basel, Switzerland). 12(4):
|
|
|
Nunley, H., Nagashima, M., Martin, K., Lorenzo Gonzalez, A., Suzuki, S.C., Norton, D.A., Wong, R.O.L., Raymond, P.A., Lubensky, D.K. (2020) Defect patterns on the curved surface of fish retinae suggest a mechanism of cone mosaic formation. PLoS Computational Biology. 16:e1008437
|
Oehlers, S.H., Cronan, M.R., Scott, N.R., Thomas, M.I., Okuda, K.S., Walton, E.M., Beerman, R.W., Crosier, P.S., Tobin, D.M. (2015) Interception of host angiogenic signalling limits mycobacterial growth. Nature. 517(7536):612-5
|
Oel, A.P., Neil, G.J., Dong, E.M., Balay, S.D., Collett, K., Allison, W.T. (2020) Nrl Is Dispensable for Specification of Rod Photoreceptors in Adult Zebrafish Despite Its Deeply Conserved Requirement Earlier in Ontogeny. iScience. 23:101805
|
|
|
|
|
Oliveira, M.L., Veloso, A., Garcia, E.G., Iyer, S., Pereira, C., Barreto, V.M., Langenau, D.M., Barata, J.T. (2022) Mutant IL7R collaborates with MYC to induce T-cell acute lymphoblastic leukemia. Leukemia. 36(6):1533-1540
|
Pagán, A.J., Lee, L.J., Edwards-Hicks, J., Moens, C.B., Tobin, D.M., Busch-Nentwich, E.M., Pearce, E.L., Ramakrishnan, L. (2022) mTOR-regulated mitochondrial metabolism limits mycobacterium-induced cytotoxicity. Cell. 185(20):3720-3738.e13
|
Pagán, A.J., Yang, C.T., Cameron, J., Swaim, L.E., Ellett, F., Lieschke, G.J., Ramakrishnan, L. (2015) Myeloid Growth Factors Promote Resistance to Mycobacterial Infection by Curtailing Granuloma Necrosis through Macrophage Replenishment. Cell Host & Microbe. 18:15-26
|
Pan, Y.A., Freundlich, T., Weissman, T.A., Schoppik, D., Wang, X.C., Zimmerman, S., Ciruna, B., Sanes, J.R., Lichtman, J.W., and Schier, A.F. (2013) Zebrabow: multispectral cell labeling for cell tracing and lineage analysis in zebrafish. Development (Cambridge, England). 140(13):2835
|
Pei, W., Xu, L., Chen, Z., Slevin, C.C., Pettie, K.P., Wincovitch, S., NISC Comparative Sequencing Program, Burgess, S.M. (2020) A subset of SMN complex members have a specific role in tissue regeneration via ERBB pathway-mediated proliferation. NPJ Regenerative medicine. 5:6
|
Peloggia, J., Münch, D., Meneses-Giles, P., Romero-Carvajal, A., Lush, M.E., Lawson, N.D., McClain, M., Pan, Y.A., Piotrowski, T. (2021) Adaptive cell invasion maintains lateral line organ homeostasis in response to environmental changes. Developmental Cell. 56(9):1296-1312.e7
|
Pestel, J., Ramadass, R., Gauvrit, S., Helker, C., Herzog, W., Stainier, D.Y. (2016) Real-time 3D visualization of cellular rearrangements during cardiac valve formation. Development (Cambridge, England). 143:2217-27
|
Phelps, D.W., Fletcher, A.A., Rodriguez-Nunez, I., Balik-Meisner, M.R., Tokarz, D.A., Reif, D.M., Germolec, D.R., Yoder, J.A. (2020) In vivo assessment of respiratory burst inhibition by xenobiotic exposure using larval zebrafish. Journal of immunotoxicology. 17:94-104
|
Pinto-Teixeira, F., Muzzopappa, M., Swoger, J., Mineo, A., Sharpe, J., and López-Schier, H. (2013) Intravital imaging of hair-cell development and regeneration in the zebrafish. Frontiers in neuroscience. 7:33
|
Priya, R., Allanki, S., Gentile, A., Mansingh, S., Uribe, V., Maischein, H.M., Stainier, D.Y.R. (2020) Tension heterogeneity directs form and fate to pattern the myocardial wall. Nature. 588(7836):130-134
|
Pujol-Martí, J., Zecca, A., Baudoin, J.P., Faucherre, A., Asakawa, K., Kawakami, K., and Lopez-Schier, H. (2012) Neuronal birth order identifies a dimorphic sensorineural map. The Journal of neuroscience : the official journal of the Society for Neuroscience. 32(9):2976-2987
|
Qi, J., Rittershaus, A., Priya, R., Mansingh, S., Stainier, D.Y.R., Helker, C.S.M. (2022) Apelin signaling dependent endocardial protrusions promote cardiac trabeculation in zebrafish. eLIFE. 11:
|
|
|
|
|
Rasouli, S.J., El-Brolosy, M., Tsedeke, A.T., Bensimon-Brito, A., Ghanbari, P., Maischein, H.M., Kuenne, C., Stainier, D.Y. (2018) The flow responsive transcription factor Klf2 is required for myocardial wall integrity by modulating Fgf signaling. eLIFE. 7:
|
|
|
Raymond, P.A., Colvin, S.M., Jabeen, Z., Nagashima, M., Barthel, L.K., Hadidjojo, J., Popova, L., Pejaver, V.R., and Lubensky, D.K. (2014) Patterning the cone mosaic array in zebrafish retina requires specification of ultraviolet-sensitive cones. PLoS One. 9(1):e85325
|
Revenu, C., Streichan, S., Donà, E., Lecaudey, V., Hufnagel, L., Gilmour, D. (2014) Quantitative cell polarity imaging defines leader-to-follower transitions during collective migration and the key role of microtubule-dependent adherens junction formation. Development (Cambridge, England). 141:1282-91
|
Rissone, A., Jimenez, E., Bishop, K., Carrington, B., Slevin, C., Wincovitch, S.M., Sood, R., Candotti, F., Burgess, S.M. (2019) A model for reticular dysgenesis shows impaired sensory organ development and hair cell regeneration linked to cellular stress. Disease models & mechanisms. 12(12):
|
|
|
|
|
|
|
|
|
Roh-Johnson, M., Shah, A.N., Stonick, J.A., Poudel, K.R., Kargl, J., Yang, G.H., di Martino, J., Hernandez, R.E., Gast, C.E., Zarour, L.R., Antoku, S., Houghton, A.M., Bravo-Cordero, J.J., Wong, M.H., Condeelis, J., Moens, C.B. (2017) Macrophage-Dependent Cytoplasmic Transfer during Melanoma Invasion In Vivo. Developmental Cell. 43:549-562.e6
|
Romero-Carvajal, A., Navajas Acedo, J., Jiang, L., Kozlovskaja-Gumbrienė, A., Alexander, R., Li, H., Piotrowski, T. (2015) Regeneration of Sensory Hair Cells Requires Localized Interactions between the Notch and Wnt Pathways. Developmental Cell. 34(3):267-82
|
|
|
|
|
Rosowski, E.E., Raffa, N., Knox, B.P., Golenberg, N., Keller, N.P., Huttenlocher, A. (2018) Macrophages inhibit Aspergillus fumigatus germination and neutrophil-mediated fungal killing. PLoS pathogens. 14:e1007229
|
Saelens, J.W., Sweeney, M.I., Viswanathan, G., Xet-Mull, A.M., Jurcic Smith, K.L., Sisk, D.M., Hu, D.D., Cronin, R.M., Hughes, E.J., Brewer, W.J., Coers, J., Champion, M.M., Champion, P.A., Lowe, C.B., Smith, C.M., Lee, S., Stout, J.E., Tobin, D.M. (2022) An ancestral mycobacterial effector promotes dissemination of infection. Cell. 185(24):4507-4525.e18
|
Salem, V., Silva, L.D., Suba, K., Georgiadou, E., Neda Mousavy Gharavy, S., Akhtar, N., Martin-Alonso, A., Gaboriau, D.C.A., Rothery, S.M., Stylianides, T., Carrat, G., Pullen, T.J., Singh, S.P., Hodson, D.J., Leclerc, I., Shapiro, A.M.J., Marchetti, P., Briant, L.J.B., Distaso, W., Ninov, N., Rutter, G.A. (2019) Leader β-cells coordinate Ca2+ dynamics across pancreatic islets in vivo. Nature metabolism. 1:615-629
|
|
|
|
|
Sarvari, P., Rasouli, S.J., Allanki, S., Stone, O.A., Sokol, A., Graumann, J., Stainier, D.Y.R. (2021) The E3 ubiquitin-protein ligase Rbx1 regulates cardiac wall morphogenesis in zebrafish. Developmental Biology. 480:1-12
|
Sato, T., Sato, F., Kamezaki, A., Sakaguchi, K., Tanigome, R., Kawakami, K., Sehara-Fujisawa, A. (2015) Neuregulin 1 Type II-ErbB Signaling Promotes Cell Divisions Generating Neurons from Neural Progenitor Cells in the Developing Zebrafish Brain. PLoS One. 10:e0127360
|
|
|
Satou, C., Kimura, Y., Hirata, H., Suster, M.L., Kawakami, K., and Higashijima, S. (2013) Transgenic tools to characterize neuronal properties of discrete populations of zebrafish neurons. Development (Cambridge, England). 140(18):3927-3931
|
|
|
|
|
Schwayer, C., Shamipour, S., Pranjic-Ferscha, K., Schauer, A., Balda, M., Tada, M., Matter, K., Heisenberg, C.P. (2019) Mechanosensation of Tight Junctions Depends on ZO-1 Phase Separation and Flow. Cell. 179:937-952.e18
|
Schweitzer, J., Löhr, H., Bonkowsky, J.L., Hübscher, K., and Driever, W. (2013) Sim1a and Arnt2 contribute to hypothalamo-spinal axon guidance by regulating Robo2 activity via a Robo3-dependent mechanism. Development (Cambridge, England). 140(1):93-106
|
Seger, C., Hargrave, M., Wang, X., Chai, R.J., Elworthy, S., and Ingham, P.W. (2011) Analysis of Pax7 expressing myogenic cells in zebrafish muscle development, injury, and models of disease. Developmental Dynamics : an official publication of the American Association of Anatomists. 240(11):2440-51
|
Sharma, P., Ruel, T.D., Kocha, K.M., Liao, S., Huang, P. (2019) Single cell dynamics of embryonic muscle progenitor cells in zebrafish. Development (Cambridge, England). 146(14):
|
Shi, W., Koo, D.E.S., Kitano, M., Chiang, H.J., Trinh, L.A., Turcatel, G., Steventon, B., Arnesano, C., Warburton, D., Fraser, S.E., Cutrale, F. (2020) Pre-processing visualization of hyperspectral fluorescent data with Spectrally Encoded Enhanced Representations. Nature communications. 11:726
|
|
|
Shin, M., Beane, T., Quillien, A., Male, I., Zhu, L.J., Lawson, N.D. (2016) Vegfa signals through ERK to promote angiogenesis, but not artery differentiation. Development (Cambridge, England). 143(20):3796-3805
|
Shorey, M., Rao, K., Stone, M.C., Mattie, F.J., Sagasti, A., Rolls, M.M. (2021) Microtubule organization of vertebrate sensory neurons in vivo. Developmental Biology. 478:1-12
|
Singh, S.P., Chawla, P., Hnatiuk, A., Kamel, M., Silva, L.D., Spanjaard, B., Eski, S.E., Janjuha, S., Olivares-Chauvet, P., Kayisoglu, O., Rost, F., Bläsche, J., Kränkel, A., Petzold, A., Kurth, T., Reinhardt, S., Junker, J.P., Ninov, N. (2022) A single-cell atlas of de novo β-cell regeneration reveals the contribution of hybrid β/δ-cells to diabetes recovery in zebrafish. Development (Cambridge, England). 149(2)
|
Singh, S.P., Janjuha, S., Chaudhuri, S., Reinhardt, S., Kränkel, A., Dietz, S., Eugster, A., Bilgin, H., Korkmaz, S., Zararsız, G., Ninov, N., Reid, J.E. (2018) Machine learning based classification of cells into chronological stages using single-cell transcriptomics. Scientific Reports. 8:17156
|
Singh, S.P., Janjuha, S., Hartmann, T., Kayisoglu, Ö., Konantz, J., Birke, S., Murawala, P., Alfar, E.A., Murata, K., Eugster, A., Tsuji, N., Morrissey, E.R., Brand, M., Ninov, N. (2017) Different developmental histories of beta-cells generate functional and proliferative heterogeneity during islet growth. Nature communications. 8:664
|
Sloan, J.L., Achilly, N.P., Arnold, M.L., Catlett, J.L., Blake, T., Bishop, K., Jones, M., Harper, U., English, M.A., Anderson, S., Trivedi, N.S., Elkahloun, A., Hoffmann, V., Brooks, B.P., Sood, R., Venditti, C.P. (2020) The vitamin B12 processing enzyme, mmachc, is essential for zebrafish survival, growth and retinal morphology. Human molecular genetics. 29(13):2109-2123
|
|
|
Stegmaier, J., Amat, F., Lemon, W.C., McDole, K., Wan, Y., Teodoro, G., Mikut, R., Keller, P.J. (2016) Real-Time Three-Dimensional Cell Segmentation in Large-Scale Microscopy Data of Developing Embryos. Developmental Cell. 36:225-240
|
|
|
Suzuki, S.C., Bleckert, A., Williams, P.R., Takechi, M., Kawamura, S., and Wong, R.O. (2013) Cone photoreceptor types in zebrafish are generated by symmetric terminal divisions of dedicated precursors. Proceedings of the National Academy of Sciences of the United States of America. 110(37):15109-14
|
Swinburne, I.A., Mosaliganti, K.R., Upadhyayula, S., Liu, T.L., Hildebrand, D.G.C., Tsai, T.Y., Chen, A., Al-Obeidi, E., Fass, A.K., Malhotra, S., Engert, F., Lichtman, J.W., Kirchausen, T., Betzig, E., Megason, S.G. (2018) Lamellar projections in the endolymphatic sac act as a relief valve to regulate inner ear pressure. eLIFE. 7
|
Sánchez-Iranzo, H., Galardi-Castilla, M., Minguillón, C., Sanz-Morejón, A., González-Rosa, J.M., Felker, A., Ernst, A., Guzmán-Martínez, G., Mosimann, C., Mercader, N. (2018) Tbx5a lineage tracing shows cardiomyocyte plasticity during zebrafish heart regeneration. Nature communications. 9:428
|
|
|
|
|
Talbot, J.C., Teets, E.M., Ratnayake, D., Duy, P.Q., Currie, P.D., Amacher, S.L. (2019) Muscle precursor cell movements in zebrafish are dynamic and require six-family genes. Development (Cambridge, England). 146(10):
|
|
|
Tatarakis, D., Cang, Z., Wu, X., Sharma, P.P., Karikomi, M., MacLean, A.L., Nie, Q., Schilling, T.F. (2021) Single-cell transcriptomic analysis of zebrafish cranial neural crest reveals spatiotemporal regulation of lineage decisions during development. Cell Reports. 37:110140
|
|
|
Tay, H.G., Schulze, S.K., Compagnon, J., Foley, F.C., Heisenberg, C.P., Yost, H.J., Abdelilah-Seyfried, S., and Amack, J.D. (2013) Lethal giant larvae 2 regulates development of the ciliated organ Kupffer's vesicle. Development (Cambridge, England). 140(7):1550-1559
|
Teixeira Rosa, J., Oralová, V., Larionova, D., Eisenhoffer, G.T., Eckhard Witten, P., Huysseune, A. (2019) Periderm invasion contributes to epithelial formation in the teleost pharynx. Scientific Reports. 9:10082
|
Thambyrajah, R., Ucanok, D., Jalali, M., Hough, Y., Wilkinson, R.N., McMahon, K., Moore, C., Gering, M. (2016) A gene trap transposon eliminates haematopoietic expression of zebrafish Gfi1aa, but does not interfere with haematopoiesis. Developmental Biology. 417(1):25-39
|
Than-Trong, E., Kiani, B., Dray, N., Ortica, S., Simons, B., Rulands, S., Alunni, A., Bally-Cuif, L. (2020) Lineage hierarchies and stochasticity ensure the long-term maintenance of adult neural stem cells. Science advances. 6:eaaz5424
|
Toro, C., Trapani, J.G., Pacentine, I., Maeda, R., Sheets, L., Mo, W., Nicolson, T. (2015) Dopamine Modulates the Activity of Sensory Hair Cells. The Journal of neuroscience : the official journal of the Society for Neuroscience. 35(50):16494-16503
|
Travnickova, J., Muise, S., Wojciechowska, S., Brombin, A., Zeng, Z., Young, A.I.J., Wyatt, C., Patton, E.E. (2022) Fate mapping melanoma persister cells through regression and into recurrent disease in adult zebrafish. Disease models & mechanisms. 15(9):
|
Troll, J.V., Hamilton, M.K., Abel, M.L., Ganz, J., Bates, J.M., Stephens, W.Z., Melancon, E., van der Vaart, M., Meijer, A.H., Distel, M., Eisen, J.S., Guillemin, K. (2018) Microbiota promote secretory cell determination in the intestinal epithelium by modulating host Notch signaling. Development (Cambridge, England). 145(4)
|
Tsedeke, A.T., Allanki, S., Gentile, A., Jimenez-Amilburu, V., Rasouli, S.J., Guenther, S., Lai, S.L., Stainier, D.Y.R., Marín-Juez, R. (2021) Cardiomyocyte heterogeneity during zebrafish development and regeneration. Developmental Biology. 476:259-271
|
Turan, F., Yilmaz, Ö., Schünemann, L., Lindenberg, T.T., Kalanithy, J.C., Harder, A., Ahmadi, S., Duman, T., MacDonald, R.B., Winter, D., Liu, C., Odermatt, B. (2021) Effect of modulating glutamate signaling on myelinating oligodendrocytes and their development-A study in the zebrafish model. Journal of neuroscience research. 99(11):2774-2792
|
Tyrkalska, S.D., Pedoto, A., Martínez-López, A., Ros-Lucas, J.A., Mesa-Del-Castillo, P., Candel, S., Mulero, V. (2022) Silica crystals activate toll-like receptors and inflammasomes to promote local and systemic immune responses in zebrafish. Developmental and comparative immunology. 138:104523
|
Uribe, V., Ramadass, R., Dogra, D., Rasouli, S.J., Gunawan, F., Nakajima, H., Chiba, A., Reischauer, S., Mochizuki, N., Stainier, D.Y.R. (2018) In vivo analysis of cardiomyocyte proliferation during trabeculation.. Development (Cambridge, England). 145(14):
|
|
|
Vandestadt, C., Vanwalleghem, G.C., Khabooshan, M.A., Douek, A.M., Castillo, H.A., Li, M., Schulze, K., Don, E., Stamatis, S.A., Ratnadiwakara, M., Änkö, M.L., Scott, E.K., Kaslin, J. (2021) RNA-induced inflammation and migration of precursor neurons initiates neuronal circuit regeneration in zebrafish. Developmental Cell. 56:2364-2380.e8
|
Venturini, V., Pezzano, F., Català Castro, F., Häkkinen, H.M., Jiménez-Delgado, S., Colomer-Rosell, M., Marro, M., Tolosa-Ramon, Q., Paz-López, S., Valverde, M.A., Weghuber, J., Loza-Alvarez, P., Krieg, M., Wieser, S., Ruprecht, V. (2020) The nucleus measures shape changes for cellular proprioception to control dynamic cell behavior. Science (New York, N.Y.). 370(6514):
|
Volkov, L.I., Kim-Han, J.S., Saunders, L.M., Poria, D., Hughes, A.E.O., Kefalov, V.J., Parichy, D.M., Corbo, J.C. (2020) Thyroid hormone receptors mediate two distinct mechanisms of long-wavelength vision. Proceedings of the National Academy of Sciences of the United States of America. 117(26):15262-15269
|
|
|
|
|
Wada, H., Ghysen, A., Asakawa, K., Abe, G., Ishitani, T., and Kawakami, K. (2013) Wnt/Dkk Negative Feedback Regulates Sensory Organ Size in Zebrafish. Current biology : CB. 23(16):1559-65
|
Wada, H., Ghysen, A., Satou, C., Higashijima, S.I., Kawakami, K., Hamaguchi, S., and Sakaizumi, M. (2010) Dermal morphogenesis controls lateral line patterning during postembryonic development of teleost fish. Developmental Biology. 340(2):583-594
|
|
|
|
|
Wang, A., Zhang, Q., Han, Y., Megason, S., Hormoz, S., Mosaliganti, K.R., Lam, J.C.K., Li, V.O.K. (2022) A novel deep learning-based 3D cell segmentation framework for future image-based disease detection. Scientific Reports. 12:342
|
Wang, X., Ono, Y., Tan, S.C., Chai, R.J., Parkin, C., and Ingham, P.W. (2011) Prdm1a and miR-499 act sequentially to restrict Sox6 activity to the fast-twitch muscle lineage in the zebrafish embryo. Development (Cambridge, England). 138(20):4399-404
|
Wattrus, S.J., Smith, M.L., Rodrigues, C.P., Hagedorn, E.J., Kim, J.W., Budnik, B., Zon, L.I. (2022) Quality assurance of hematopoietic stem cells by macrophages determines stem cell clonality. Science (New York, N.Y.). 377:1413-1419
|
|
|
White, D.T., Sengupta, S., Saxena, M.T., Xu, Q., Hanes, J., Ding, D., Ji, H., Mumm, J.S. (2017) Immunomodulation-accelerated neuronal regeneration following selective rod photoreceptor cell ablation in the zebrafish retina. Proceedings of the National Academy of Sciences of the United States of America. 114(18):E3719-E3728
|
Wibowo, I., Pinto-Teixeira, F., Satou, C., Higashijima, S., and Lopez-Schier, H. (2011) Compartmentalized Notch signaling sustains epithelial mirror symmetry. Development (Cambridge, England). 138(6):1143-1152
|
|
|
|
|
|
|
Xie, M., Kamenev, D., Kaucka, M., Kastriti, M.E., Zhou, B., Artemov, A.V., Storer, M., Fried, K., Adameyko, I., Dyachuk, V., Chagin, A.S. (2019) Schwann cell precursors contribute to skeletal formation during embryonic development in mice and zebrafish. Proceedings of the National Academy of Sciences of the United States of America. 116(30):15068-15073
|
Xiong, F., Ma, W., Hiscock, T.W., Mosaliganti, K.R., Tentner, A.R., Brakke, K.A., Rannou, N., Gelas, A., Souhait, L., Swinburne, I.A., Obholzer, N.D., Megason, S.G. (2014) Interplay of Cell Shape and Division Orientation Promotes Robust Morphogenesis of Developing Epithelia. Cell. 159:415-427
|
Xiong, F., Tentner, A.R., Huang, P., Gelas, A., Mosaliganti, K.R., Souhait, L., Rannou, N., Swinburne, I.A., Obholzer, N.D., Cowgill, P.D., Schier, A.F., and Megason, S.G. (2013) Specified neural progenitors sort to form sharp domains after noisy shh signaling. Cell. 153(3):550-561
|
Yang, B., Lange, M., Millett-Sikking, A., Zhao, X., Bragantini, J., VijayKumar, S., Kamb, M., Gómez-Sjöberg, R., Solak, A.C., Wang, W., Kobayashi, H., McCarroll, M.N., Whitehead, L.W., Fiolka, R.P., Kornberg, T.B., York, A.G., Royer, L.A. (2022) DaXi-high-resolution, large imaging volume and multi-view single-objective light-sheet microscopy. Nature Methods. 19(4):461-469
|
Yang, B., Yang, L., Wang, Y., Maddison, L.A., Tang, Z., Haigh, S., Gong, Y., Zhang, Y., Covington, B.A., Bosma, K.J., Tong, X., Page-McCaw, P., Gannon, M., Deng, Q., Chen, W. (2022) Macrophages and neutrophils are necessary for ER stress-induced β cell loss. Cell Reports. 40:111255
|
Yang, L., Jiménez, J.A., Earley, A.M., Hamlin, V., Kwon, V., Dixon, C.T., Shiau, C.E. (2020) Drainage of inflammatory macromolecules from brain to periphery targets the liver for macrophage infiltration. eLIFE. 9:
|
Yao, S., Yuan, P., Ouellette, B., Zhou, T., Mortrud, M., Balaram, P., Chatterjee, S., Wang, Y., Daigle, T.L., Tasic, B., Kuang, X., Gong, H., Luo, Q., Zeng, S., Curtright, A., Dhaka, A., Kahan, A., Gradinaru, V., Chrapkiewicz, R., Schnitzer, M., Zeng, H., Cetin, A. (2020) RecV recombinase system for in vivo targeted optogenomic modifications of single cells or cell populations. Nature Methods. 17(4):422-429
|
Ye, L., Mueller, O., Bagwell, J., Bagnat, M., Liddle, R.A., Rawls, J.F. (2019) High fat diet induces microbiota-dependent silencing of enteroendocrine cells. eLIFE. 8:
|
Ye, Z., Su, Z., Xie, S., Liu, Y., Wang, Y., Xu, X., Zheng, Y., Zhao, M., Jiang, L. (2020) Yap-lin28a axis targets let7-Wnt pathway to restore progenitors for initiating regeneration. eLIFE. 9:
|
Yoshimatsu, T., Bartel, P., Schröder, C., Janiak, F.K., St-Pierre, F., Berens, P., Baden, T. (2021) Ancestral circuits for vertebrate color vision emerge at the first retinal synapse. Science advances. 7:eabj6815
|
Yu, D., Dong, Z., Gustafson, W.C., Ruiz-González, R., Signor, L., Marzocca, F., Borel, F., Klassen, M.P., Makhijani, K., Royant, A., Jan, Y.N., Weiss, W.A., Guo, S., Shu, X. (2016) Rational design of a monomeric and photostable far-red fluorescent protein for fluorescence imaging in vivo. Protein science : a publication of the Protein Society. 25(2):308-15
|
|
|
Zelina, P., Blockus, H., Zagar, Y., Péres, A., Friocourt, F., Wu, Z., Rama, N., Fouquet, C., Hohenester, E., Tessier-Lavigne, M., Schweitzer, J., Roest Crollius, H., Chédotal, A. (2014) Signaling switch of the axon guidance receptor Robo3 during vertebrate evolution. Neuron. 84:1258-72
|
|
|
Zhang, J., Zhou, Y., Li, S., Mo, D., Ma, J., Ni, R., Yang, Q., He, J., Luo, L. (2022) Tel2 regulates redifferentiation of bipotential progenitor cells via Hhex during zebrafish liver regeneration. Cell Reports. 39:110596
|
Zhang, M., Di Martino, J.S., Bowman, R.L., Campbell, N.R., Baksh, S.C., Simon-Vermot, T., Kim, I.S., Haldeman, P., Mondal, C., Yong-Gonzalez, V., Abu-Akeel, M., Merghoub, T., Jones, D.R., Zhu, X.G., Arora, A., Ariyan, C.E., Birsoy, K., Wolchok, J.D., Panageas, K.S., Hollmann, T.J., Bravo-Cordero, J.J., White, R.M. (2018) Adipocyte-derived lipids mediate melanoma progression via FATP proteins. Cancer discovery. 8(8):1006-1025
|
Zhang, W., Wu, C., Ni, R., Yang, Q., Luo, L., He, J. (2021) Formimidoyltransferase cyclodeaminase prevents the starvation-induced liver hepatomegaly and dysfunction through downregulating mTORC1. PLoS Genetics. 17:e1009980
|
Zhao, X., Garcia, J.Q., Tong, K., Chen, X., Yang, B., Li, Q., Dai, Z., Shi, X., Seiple, I.B., Huang, B., Guo, S. (2021) Polarized endosome dynamics engage cytoplasmic Par-3 that recruits dynein during asymmetric cell division. Science advances. 7(24)
|
|
|
Zimmermann, M.J.Y., Nevala, N.E., Yoshimatsu, T., Osorio, D., Nilsson, D.E., Berens, P., Baden, T. (2018) Zebrafish Differentially Process Color across Visual Space to Match Natural Scenes. Current biology : CB. 28(13):2018-2032.e5
|
Angueyra, J.M., Kunze, V.P., Patak, L.K., Kim, H., Kindt, K., Li, W. (2023) Transcription factors underlying photoreceptor diversity. eLIFE. 12:
|
Fan, J., Hale, V.L., Lelieveld, L.T., Whitworth, L.J., Busch-Nentwich, E.M., Troll, M., Edelstein, P.H., Cox, T.M., Roca, F.J., Aerts, J.M.F.G., Ramakrishnan, L. (2023) Gaucher disease protects against tuberculosis. Proceedings of the National Academy of Sciences of the United States of America. 120:e2217673120e2217673120
|
Bogoch, Y., Jamieson-Lucy, A., Vejnar, C.E., Levy, K., Giraldez, A.J., Mullins, M.C., Elkouby, Y.M. (2022) Stage Specific Transcriptomic Analysis and Database for Zebrafish Oogenesis. Frontiers in cell and developmental biology. 10:826892
|
Born, L.I., Andree, T., Frank, S., Hübner, J., Link, S., Langheine, M., Charlet, A., Esser, J.S., Brehm, R., Moser, M. (2022) eif4ebp3l-A New Affector of Zebrafish Angiogenesis and Heart Regeneration?. International Journal of Molecular Sciences. 23(17)
|
Brewer, W.J., Xet-Mull, A.M., Yu, A., Sweeney, M.I., Walton, E.M., Tobin, D.M. (2022) Macrophage NFATC2 mediates angiogenic signaling during mycobacterial infection. Cell Reports. 41:111817111817
|
Cadiz Diaz, A., Schmidt, N.A., Yamazaki, M., Hsieh, C.J., Lisse, T.S., Rieger, S. (2022) Coordinated NADPH oxidase/hydrogen peroxide functions regulate cutaneous sensory axon de- and regeneration. Proceedings of the National Academy of Sciences of the United States of America. 119:e2115009119
|
Hu, B., Lelek, S., Spanjaard, B., El-Sammak, H., Simões, M.G., Mintcheva, J., Aliee, H., Schäfer, R., Meyer, A.M., Theis, F., Stainier, D.Y.R., Panáková, D., Junker, J.P. (2022) Origin and function of activated fibroblast states during zebrafish heart regeneration. Nature Genetics. 54(8):1227-1237
|
Hughes, S.M., Escaleira, R.C., Wanders, K., Koth, J., Wilkinson, D.G., Xu, Q. (2022) Clonal behaviour of myogenic precursor cells throughout the vertebrate lifespan. Biology Open. 11(8):
|
|
|
Jin, M., Zhang, H., Xu, B., Li, Y., Qin, H., Yu, S., He, J. (2022) Jag2b-Notch3/1b-mediated neuron-to-glia crosstalk controls retinal gliogenesis. EMBO reports. 23(10):e54922
|
|
|
Laureano, A.S., Flaherty, K., Hinman, A.M., Jadali, A., Nakamura, T., Higashijima, S.I., Sabaawy, H.E., Kwan, K.Y. (2022) shox2 is required for vestibular statoacoustic neuron development. Biology Open. 11(12):
|
Li, H., Trager, L.E., Liu, X., Hastings, M.H., Xiao, C., Guerra, J., To, S., Li, G., Yeri, A., Rodosthenous, R., Silverman, M.G., Das, S., Ambardekar, A.V., Bristow, M.R., Gonzalez-Rosa, J.M., Rosenzweig, A. (2022) lncExACT1 and DCHS2 Regulate Physiological and Pathological Cardiac Growth. Circulation. 145(16):1218-1233
|
Luo, K., Ogawa, M., Ayer, A., Britton, W.J., Stocker, R., Kikuchi, K., Oehlers, S.H. (2022) Zebrafish Heme Oxygenase 1a Is Necessary for Normal Development and Macrophage Migration. Zebrafish. 19(1):7-17
|
Marques, I.J., Ernst, A., Arora, P., Vianin, A., Hetke, T., Sanz-Morejón, A., Naumann, U., Odriozola, A., Langa, X., Andrés-Delgado, L., Zuber, B., Torroja, C., Osterwalder, M., Simões, F., Englert, C., Mercader, N. (2022) WT1 transcription factor impairs cardiomyocyte specification and drives a phenotypic switch from myocardium to epicardium. Development (Cambridge, England). 149(6):
|
|
|
Nelson, R.F., Balraj, A., Suresh, T., Elias, L.J., Yoshimatsu, T., Patterson, S.S. (2022) The developmental progression of eight opsin spectral signals recorded from the zebrafish retinal cone layer is altered by the timing and cell type expression of thyroxin receptor β2 (trβ2) gain-of-function transgenes. eNeuro. 9(6):
|
Oliveira, M.L., Veloso, A., Garcia, E.G., Iyer, S., Pereira, C., Barreto, V.M., Langenau, D.M., Barata, J.T. (2022) Mutant IL7R collaborates with MYC to induce T-cell acute lymphoblastic leukemia. Leukemia. 36(6):1533-1540
|
Pagán, A.J., Lee, L.J., Edwards-Hicks, J., Moens, C.B., Tobin, D.M., Busch-Nentwich, E.M., Pearce, E.L., Ramakrishnan, L. (2022) mTOR-regulated mitochondrial metabolism limits mycobacterium-induced cytotoxicity. Cell. 185(20):3720-3738.e13
|
Qi, J., Rittershaus, A., Priya, R., Mansingh, S., Stainier, D.Y.R., Helker, C.S.M. (2022) Apelin signaling dependent endocardial protrusions promote cardiac trabeculation in zebrafish. eLIFE. 11:
|
|
|
Saelens, J.W., Sweeney, M.I., Viswanathan, G., Xet-Mull, A.M., Jurcic Smith, K.L., Sisk, D.M., Hu, D.D., Cronin, R.M., Hughes, E.J., Brewer, W.J., Coers, J., Champion, M.M., Champion, P.A., Lowe, C.B., Smith, C.M., Lee, S., Stout, J.E., Tobin, D.M. (2022) An ancestral mycobacterial effector promotes dissemination of infection. Cell. 185(24):4507-4525.e18
|
Singh, S.P., Chawla, P., Hnatiuk, A., Kamel, M., Silva, L.D., Spanjaard, B., Eski, S.E., Janjuha, S., Olivares-Chauvet, P., Kayisoglu, O., Rost, F., Bläsche, J., Kränkel, A., Petzold, A., Kurth, T., Reinhardt, S., Junker, J.P., Ninov, N. (2022) A single-cell atlas of de novo β-cell regeneration reveals the contribution of hybrid β/δ-cells to diabetes recovery in zebrafish. Development (Cambridge, England). 149(2)
|
|
|
|
|
Travnickova, J., Muise, S., Wojciechowska, S., Brombin, A., Zeng, Z., Young, A.I.J., Wyatt, C., Patton, E.E. (2022) Fate mapping melanoma persister cells through regression and into recurrent disease in adult zebrafish. Disease models & mechanisms. 15(9):
|
Tyrkalska, S.D., Pedoto, A., Martínez-López, A., Ros-Lucas, J.A., Mesa-Del-Castillo, P., Candel, S., Mulero, V. (2022) Silica crystals activate toll-like receptors and inflammasomes to promote local and systemic immune responses in zebrafish. Developmental and comparative immunology. 138:104523
|
Wang, A., Zhang, Q., Han, Y., Megason, S., Hormoz, S., Mosaliganti, K.R., Lam, J.C.K., Li, V.O.K. (2022) A novel deep learning-based 3D cell segmentation framework for future image-based disease detection. Scientific Reports. 12:342
|
Wattrus, S.J., Smith, M.L., Rodrigues, C.P., Hagedorn, E.J., Kim, J.W., Budnik, B., Zon, L.I. (2022) Quality assurance of hematopoietic stem cells by macrophages determines stem cell clonality. Science (New York, N.Y.). 377:1413-1419
|
Yang, B., Lange, M., Millett-Sikking, A., Zhao, X., Bragantini, J., VijayKumar, S., Kamb, M., Gómez-Sjöberg, R., Solak, A.C., Wang, W., Kobayashi, H., McCarroll, M.N., Whitehead, L.W., Fiolka, R.P., Kornberg, T.B., York, A.G., Royer, L.A. (2022) DaXi-high-resolution, large imaging volume and multi-view single-objective light-sheet microscopy. Nature Methods. 19(4):461-469
|
Yang, B., Yang, L., Wang, Y., Maddison, L.A., Tang, Z., Haigh, S., Gong, Y., Zhang, Y., Covington, B.A., Bosma, K.J., Tong, X., Page-McCaw, P., Gannon, M., Deng, Q., Chen, W. (2022) Macrophages and neutrophils are necessary for ER stress-induced β cell loss. Cell Reports. 40:111255
|
Zhang, J., Zhou, Y., Li, S., Mo, D., Ma, J., Ni, R., Yang, Q., He, J., Luo, L. (2022) Tel2 regulates redifferentiation of bipotential progenitor cells via Hhex during zebrafish liver regeneration. Cell Reports. 39:110596
|
|
|
Avagyan, S., Henninger, J.E., Mannherz, W.P., Mistry, M., Yoon, J., Yang, S., Weber, M.C., Moore, J.L., Zon, L.I. (2021) Resistance to inflammation underlies enhanced fitness in clonal hematopoiesis. Science (New York, N.Y.). 374:768-772
|
Avagyan, S., Weber, M.C., Ma, S., Prasad, M., Mannherz, W.P., Yang, S., Buenrostro, J.D., Zon, L.I. (2021) Single-cell ATAC-seq reveals GATA2-dependent priming defect in myeloid and a maturation bottleneck in lymphoid lineages. Blood advances. 5:2673-2686
|
|
|
Cronan, M.R., Hughes, E.J., Brewer, W.J., Viswanathan, G., Hunt, E.G., Singh, B., Mehra, S., Oehlers, S.H., Gregory, S.G., Kaushal, D., Tobin, D.M. (2021) A non-canonical type 2 immune response coordinates tuberculous granuloma formation and epithelialization. Cell. 184(7):1757-1774.e14
|
Dray, N., Mancini, L., Binshtok, U., Cheysson, F., Supatto, W., Mahou, P., Bedu, S., Ortica, S., Than-Trong, E., Krecsmarik, M., Herbert, S., Masson, J.B., Tinevez, J.Y., Lang, G., Beaurepaire, E., Sprinzak, D., Bally-Cuif, L. (2021) Dynamic spatiotemporal coordination of neural stem cell fate decisions occurs through local feedback in the adult vertebrate brain. Cell Stem Cell. 28(8):1457-1472.e12
|
|
|
Forner-Piquer, I., Klement, W., Gangarossa, G., Zub, E., de Bock, F., Blaquiere, M., Maurice, T., Audinat, E., Faucherre, A., Lasserre, F., Ellero-Simatos, S., Gamet-Payrastre, L., Jopling, C., Marchi, N. (2021) Varying modalities of perinatal exposure to a pesticide cocktail elicit neurological adaptations in mice and zebrafish. Environmental pollution (Barking, Essex : 1987). 278:116755
|
Hatzold, J., Wessendorf, H., Pogoda, H.M., Bloch, W., Hammerschmidt, M. (2021) The Kunitz-type serine protease inhibitor Spint2 is required for cellular cohesion, coordinated cell migration and cell survival during zebrafish hatching gland development. Developmental Biology. 476:148-170
|
|
|
|
|
Kamenev, D., Sunadome, K., Shirokov, M., Chagin, A.S., Singh, A., Irion, U., Adameyko, I., Fried, K., Dyachuk, V. (2021) Schwann cell precursors generate sympathoadrenal system during zebrafish development. Journal of neuroscience research. 99(10):2540-2557
|
|
|
Levic, D.S., Yamaguchi, N., Wang, S., Knaut, H., Bagnat, M. (2021) Knock-in tagging in zebrafish facilitated by insertion into non-coding regions. Development (Cambridge, England). 148(19):
|
Lumaquin, D., Johns, E., Montal, E., Weiss, J.M., Ola, D., Abuhashem, A., White, R.M. (2021) An in vivo reporter for tracking lipid droplet dynamics in transparent zebrafish. eLIFE. 10:
|
Ma, J., Scott, C.A., Ho, Y.N., Mahabaleshwar, H., Marsay, K.S., Zhang, C., Teow, C.K., Ng, S.S., Zhang, W., Tergaonkar, V., Partridge, L.J., Roy, S., Amaya, E., Carney, T.J. (2021) Matriptase activation of Gq drives epithelial disruption and inflammation via RSK and DUOX. eLIFE. 10:
|
|
|
Marvel, M., Levavi-Sivan, B., Wong, T.T., Zmora, N., Zohar, Y. (2021) Gnrh2 maintains reproduction in fasting zebrafish through dynamic neuronal projection changes and regulation of gonadotropin synthesis, oogenesis, and reproductive behaviors. Scientific Reports. 11:6657
|
|
|
|
|
Peloggia, J., Münch, D., Meneses-Giles, P., Romero-Carvajal, A., Lush, M.E., Lawson, N.D., McClain, M., Pan, Y.A., Piotrowski, T. (2021) Adaptive cell invasion maintains lateral line organ homeostasis in response to environmental changes. Developmental Cell. 56(9):1296-1312.e7
|
|
|
|
|
|
|
Sarvari, P., Rasouli, S.J., Allanki, S., Stone, O.A., Sokol, A., Graumann, J., Stainier, D.Y.R. (2021) The E3 ubiquitin-protein ligase Rbx1 regulates cardiac wall morphogenesis in zebrafish. Developmental Biology. 480:1-12
|
Shorey, M., Rao, K., Stone, M.C., Mattie, F.J., Sagasti, A., Rolls, M.M. (2021) Microtubule organization of vertebrate sensory neurons in vivo. Developmental Biology. 478:1-12
|
Tatarakis, D., Cang, Z., Wu, X., Sharma, P.P., Karikomi, M., MacLean, A.L., Nie, Q., Schilling, T.F. (2021) Single-cell transcriptomic analysis of zebrafish cranial neural crest reveals spatiotemporal regulation of lineage decisions during development. Cell Reports. 37:110140
|
Tsedeke, A.T., Allanki, S., Gentile, A., Jimenez-Amilburu, V., Rasouli, S.J., Guenther, S., Lai, S.L., Stainier, D.Y.R., Marín-Juez, R. (2021) Cardiomyocyte heterogeneity during zebrafish development and regeneration. Developmental Biology. 476:259-271
|
Turan, F., Yilmaz, Ö., Schünemann, L., Lindenberg, T.T., Kalanithy, J.C., Harder, A., Ahmadi, S., Duman, T., MacDonald, R.B., Winter, D., Liu, C., Odermatt, B. (2021) Effect of modulating glutamate signaling on myelinating oligodendrocytes and their development-A study in the zebrafish model. Journal of neuroscience research. 99(11):2774-2792
|
Vandestadt, C., Vanwalleghem, G.C., Khabooshan, M.A., Douek, A.M., Castillo, H.A., Li, M., Schulze, K., Don, E., Stamatis, S.A., Ratnadiwakara, M., Änkö, M.L., Scott, E.K., Kaslin, J. (2021) RNA-induced inflammation and migration of precursor neurons initiates neuronal circuit regeneration in zebrafish. Developmental Cell. 56:2364-2380.e8
|
Yoshimatsu, T., Bartel, P., Schröder, C., Janiak, F.K., St-Pierre, F., Berens, P., Baden, T. (2021) Ancestral circuits for vertebrate color vision emerge at the first retinal synapse. Science advances. 7:eabj6815
|
|
|
|
|
Zhang, W., Wu, C., Ni, R., Yang, Q., Luo, L., He, J. (2021) Formimidoyltransferase cyclodeaminase prevents the starvation-induced liver hepatomegaly and dysfunction through downregulating mTORC1. PLoS Genetics. 17:e1009980
|
Zhao, X., Garcia, J.Q., Tong, K., Chen, X., Yang, B., Li, Q., Dai, Z., Shi, X., Seiple, I.B., Huang, B., Guo, S. (2021) Polarized endosome dynamics engage cytoplasmic Par-3 that recruits dynein during asymmetric cell division. Science advances. 7(24)
|
|
|
Anderson, R.A., Schwalbach, K.T., Mui, S.R., LeClair, E.E., Topczewska, J.M., Topczewski, J. (2020) Zebrafish models of skeletal dysplasia induced by cholesterol biosynthesis deficiency. Disease models & mechanisms. 13(6):
|
Antinucci, P., Dumitrescu, A., Deleuze, C., Morley, H.J., Leung, K., Hagley, T., Kubo, F., Baier, H., Bianco, I.H., Wyart, C. (2020) A calibrated optogenetic toolbox of stable zebrafish opsin lines. eLIFE. 9:
|
Bertozzi, A., Wu, C.C., Nguyen, P.D., Vasudevarao, M.D., Mulaw, M.A., Koopman, C.D., de Boer, T.P., Bakkers, J., Weidinger, G. (2020) Is zebrafish heart regeneration "complete"? Lineage-restricted cardiomyocytes proliferate to pre-injury numbers but some fail to differentiate in fibrotic hearts. Developmental Biology. 471:106-118
|
|
|
Camiolo, G., Barbato, A., Giallongo, C., Vicario, N., Romano, A., Parrinello, N.L., Parenti, R., Sandoval, J.C., García-Moreno, D., Lazzarino, G., Avola, R., Palumbo, G.A., Mulero, V., Li Volti, G., Tibullo, D., Di Raimondo, F. (2020) Iron regulates myeloma cell/macrophage interaction and drives resistance to bortezomib. Redox Biology. 36:101611
|
Cholan, P.M., Han, A., Woodie, B.R., Watchon, M., Kurz, A.R., Laird, A.S., Britton, W.J., Ye, L., Holmes, Z.C., McCann, J.R., David, L.A., Rawls, J.F., Oehlers, S.H. (2020) Conserved anti-inflammatory effects and sensing of butyrate in zebrafish. Gut microbes. 12:1-11
|
Chow, D.M., Sinefeld, D., Kolkman, K.E., Ouzounov, D.G., Akbari, N., Tatarsky, R., Bass, A., Xu, C., Fetcho, J.R. (2020) Deep three-photon imaging of the brain in intact adult zebrafish. Nature Methods. 17(6):605-608
|
Cirrincione, A.M., Pellegrini, A.D., Dominy, J.R., Benjamin, M.E., Utkina-Sosunova, I., Lotti, F., Jergova, S., Sagen, J., Rieger, S. (2020) Paclitaxel-induced peripheral neuropathy is caused by epidermal ROS and mitochondrial damage through conserved MMP-13 activation. Scientific Reports. 10:3970
|
|
|
|
|
Deveau, C., Jiao, X., Suzuki, S.C., Krishnakumar, A., Yoshimatsu, T., Hejtmancik, J.F., Nelson, R.F. (2020) Thyroid hormone receptor beta mutations alter photoreceptor development and function in Danio rerio (zebrafish). PLoS Genetics. 16:e1008869
|
|
|
Forner-Piquer, I., Faucherre, A., Byram, J., Blaquiere, M., de Bock, F., Gamet-Payrastre, L., Ellero-Simatos, S., Audinat, E., Jopling, C., Marchi, N. (2020) Differential impact of dose-range glyphosate on locomotor behavior, neuronal activity, glio-cerebrovascular structures, and transcript regulations in zebrafish larvae. Chemosphere. 267:128986
|
Frame, J.M., Kubaczka, C., Long, T.L., Esain, V., Soto, R.A., Hachimi, M., Jing, R., Shwartz, A., Goessling, W., Daley, G.Q., North, T.E. (2020) Metabolic Regulation of Inflammasome Activity Controls Embryonic Hematopoietic Stem and Progenitor Cell Production. Developmental Cell. 55(2):133-149.e6
|
|
|
Han, B., Zhang, Y., Bi, X., Zhou, Y., Krueger, C.J., Hu, X., Zhu, Z., Tong, X., Zhang, B. (2020) Bi-FoRe: an efficient bidirectional knockin strategy to generate pairwise conditional alleles with fluorescent indicators. Protein & cell. 12(1):39-56
|
Hansen, J.N., Kaiser, F., Klausen, C., Stüven, B., Chong, R., Bönigk, W., Mick, D.U., Möglich, A., Jurisch-Yaksi, N., Schmidt, F.I., Wachten, D. (2020) Nanobody-directed targeting of optogenetic tools to study signaling in the primary cilium. eLIFE. 9:
|
|
|
|
|
Hudson, A.M., Lockard, G.M., Namjoshi, O.A., Wilson, J.W., Kindt, K.S., Blough, B.E., Coffin, A.B. (2020) Berbamine Analogs Exhibit Differential Protective Effects From Aminoglycoside-Induced Hair Cell Death. Frontiers in Cellular Neuroscience. 14:234
|
Itoh, T., Takeuchi, M., Sakagami, M., Asakawa, K., Sumiyama, K., Kawakami, K., Shimizu, T., Hibi, M. (2020) Gsx2 is required for specification of neurons in the inferior olivary nuclei from Ptf1a-expressing neural progenitors in zebrafish. Development (Cambridge, England). 147(19):
|
|
|
|
|
|
|
Kölsch, Y., Hahn, J., Sappington, A., Stemmer, M., Fernandes, A.M., Helmbrecht, T.O., Lele, S., Butrus, S., Laurell, E., Arnold-Ammer, I., Shekhar, K., Sanes, J.R., Baier, H. (2020) Molecular classification of zebrafish retinal ganglion cells links genes to cell types to behavior. Neuron. 109(4):645-662.e9
|
Lee, D.A., Oikonomou, G., Cammidge, T., Andreev, A., Hong, Y., Hurley, H., Prober, D.A. (2020) Neuropeptide VF neurons promote sleep via the serotonergic raphe. eLIFE. 9:
|
Liu, H., Duncan, K., Helverson, A., Kumari, P., Mumm, C., Xiao, Y., Carlson, J.C., Darbellay, F., Visel, A., Leslie, E., Breheny, P., Erives, A.J., Cornell, R.A. (2020) Analysis of zebrafish periderm enhancers facilitates identification of a regulatory variant near human KRT8/18. eLIFE. 9:
|
|
|
|
|
Nunley, H., Nagashima, M., Martin, K., Lorenzo Gonzalez, A., Suzuki, S.C., Norton, D.A., Wong, R.O.L., Raymond, P.A., Lubensky, D.K. (2020) Defect patterns on the curved surface of fish retinae suggest a mechanism of cone mosaic formation. PLoS Computational Biology. 16:e1008437
|
Oel, A.P., Neil, G.J., Dong, E.M., Balay, S.D., Collett, K., Allison, W.T. (2020) Nrl Is Dispensable for Specification of Rod Photoreceptors in Adult Zebrafish Despite Its Deeply Conserved Requirement Earlier in Ontogeny. iScience. 23:101805
|
|
|
Pei, W., Xu, L., Chen, Z., Slevin, C.C., Pettie, K.P., Wincovitch, S., NISC Comparative Sequencing Program, Burgess, S.M. (2020) A subset of SMN complex members have a specific role in tissue regeneration via ERBB pathway-mediated proliferation. NPJ Regenerative medicine. 5:6
|
Phelps, D.W., Fletcher, A.A., Rodriguez-Nunez, I., Balik-Meisner, M.R., Tokarz, D.A., Reif, D.M., Germolec, D.R., Yoder, J.A. (2020) In vivo assessment of respiratory burst inhibition by xenobiotic exposure using larval zebrafish. Journal of immunotoxicology. 17:94-104
|
Priya, R., Allanki, S., Gentile, A., Mansingh, S., Uribe, V., Maischein, H.M., Stainier, D.Y.R. (2020) Tension heterogeneity directs form and fate to pattern the myocardial wall. Nature. 588(7836):130-134
|
|
|
|
|
Shi, W., Koo, D.E.S., Kitano, M., Chiang, H.J., Trinh, L.A., Turcatel, G., Steventon, B., Arnesano, C., Warburton, D., Fraser, S.E., Cutrale, F. (2020) Pre-processing visualization of hyperspectral fluorescent data with Spectrally Encoded Enhanced Representations. Nature communications. 11:726
|
Sloan, J.L., Achilly, N.P., Arnold, M.L., Catlett, J.L., Blake, T., Bishop, K., Jones, M., Harper, U., English, M.A., Anderson, S., Trivedi, N.S., Elkahloun, A., Hoffmann, V., Brooks, B.P., Sood, R., Venditti, C.P. (2020) The vitamin B12 processing enzyme, mmachc, is essential for zebrafish survival, growth and retinal morphology. Human molecular genetics. 29(13):2109-2123
|
|
|
Than-Trong, E., Kiani, B., Dray, N., Ortica, S., Simons, B., Rulands, S., Alunni, A., Bally-Cuif, L. (2020) Lineage hierarchies and stochasticity ensure the long-term maintenance of adult neural stem cells. Science advances. 6:eaaz5424
|
Venturini, V., Pezzano, F., Català Castro, F., Häkkinen, H.M., Jiménez-Delgado, S., Colomer-Rosell, M., Marro, M., Tolosa-Ramon, Q., Paz-López, S., Valverde, M.A., Weghuber, J., Loza-Alvarez, P., Krieg, M., Wieser, S., Ruprecht, V. (2020) The nucleus measures shape changes for cellular proprioception to control dynamic cell behavior. Science (New York, N.Y.). 370(6514):
|
Volkov, L.I., Kim-Han, J.S., Saunders, L.M., Poria, D., Hughes, A.E.O., Kefalov, V.J., Parichy, D.M., Corbo, J.C. (2020) Thyroid hormone receptors mediate two distinct mechanisms of long-wavelength vision. Proceedings of the National Academy of Sciences of the United States of America. 117(26):15262-15269
|
|
|
|
|
|
|
Yang, L., Jiménez, J.A., Earley, A.M., Hamlin, V., Kwon, V., Dixon, C.T., Shiau, C.E. (2020) Drainage of inflammatory macromolecules from brain to periphery targets the liver for macrophage infiltration. eLIFE. 9:
|
Yao, S., Yuan, P., Ouellette, B., Zhou, T., Mortrud, M., Balaram, P., Chatterjee, S., Wang, Y., Daigle, T.L., Tasic, B., Kuang, X., Gong, H., Luo, Q., Zeng, S., Curtright, A., Dhaka, A., Kahan, A., Gradinaru, V., Chrapkiewicz, R., Schnitzer, M., Zeng, H., Cetin, A. (2020) RecV recombinase system for in vivo targeted optogenomic modifications of single cells or cell populations. Nature Methods. 17(4):422-429
|
Ye, Z., Su, Z., Xie, S., Liu, Y., Wang, Y., Xu, X., Zheng, Y., Zhao, M., Jiang, L. (2020) Yap-lin28a axis targets let7-Wnt pathway to restore progenitors for initiating regeneration. eLIFE. 9:
|
Abe, K., Shimada, A., Tayama, S., Nishikawa, H., Kaneko, T., Tsuda, S., Karaiwa, A., Matsui, T., Ishitani, T., Takeda, H. (2019) Horizontal Boundary Cells, a Special Group of Somitic Cells, Play Crucial Roles in the Formation of Dorsoventral Compartments in Teleost Somite. Cell Reports. 27:928-939.e4
|
Anguita-Salinas, C., Sánchez, M., Morales, R.A., Ceci, M.L., Rojas-Benítez, D., Allende, M.L. (2019) Cellular Dynamics during Spinal Cord Regeneration in Larval Zebrafish. Developmental neuroscience. 41(1-2):112-122
|
|
|
Arribat, Y., Grepper, D., Lagarrigue, S., Richard, J., Gachet, M., Gut, P., Amati, F. (2019) Mitochondria in Embryogenesis: An Organellogenesis Perspective. Frontiers in cell and developmental biology. 7:282
|
Black, H.D., Xu, W., Hortle, E., Roberston, S.I., Britton, W.J., Kaur, A., New, E.J., Witting, P.K., Chami, B., Oehlers, S.H. (2019) The cyclic nitroxide antioxidant 4-methoxy-TEMPO decreases mycobacterial burden in vivo through host and bacterial targets. Free radical biology & medicine. 135:157-166
|
|
|
|
|
Eckert, P., Knickmeyer, M.D., Schütz, L., Wittbrodt, J., Heermann, S. (2019) Morphogenesis and axis specification occur in parallel during optic cup and optic fissure formation, differentially modulated by BMP and Wnt. Open Biology. 9:180179
|
|
|
Espenschied, S.T., Cronan, M.R., Matty, M.A., Mueller, O., Redinbo, M.R., Tobin, D.M., Rawls, J.F. (2019) Epithelial delamination is protective during pharmaceutical-induced enteropathy. Proceedings of the National Academy of Sciences of the United States of America. 116(34):16961-16970
|
Fukuda, R., Aharonov, A., Ong, Y.T., Stone, O.A., El-Brolosy, M., Maischein, H.M., Potente, M., Tzahor, E., Stainier, D.Y. (2019) Metabolic modulation regulates cardiac wall morphogenesis in zebrafish. eLIFE. 8:
|
Fukuda, R., Gunawan, F., Ramadass, R., Beisaw, A., Konzer, A., Mullapudi, S.T., Gentile, A., Maischein, H.M., Graumann, J., Stainier, D.Y.R. (2019) Mechanical Forces Regulate Cardiomyocyte Myofilament Maturation via the VCL-SSH1-CFL Axis. Developmental Cell. 51(1):62-77.e5
|
Giovannone, D., Paul, S., Schindler, S., Arata, C., Farmer, D.T., Patel, P., Smeeton, J., Crump, J.G. (2019) Programmed conversion of hypertrophic chondrocytes into osteoblasts and marrow adipocytes within zebrafish bones. eLIFE. 8:
|
Harrison, M.R., Feng, X., Mo, G., Aguayo, A., Villafuerte, J., Yoshida, T., Pearson, C.A., Schulte-Merker, S., Lien, C.L. (2019) Late developing cardiac lymphatic vasculature supports adult zebrafish heart function and regeneration. eLIFE. 8:
|
Hortle, E., Johnson, K.E., Johansen, M.D., Nguyen, T., Shavit, J.A., Britton, W.J., Tobin, D.M., Oehlers, S.H. (2019) Thrombocyte inhibition restores protective immunity to mycobacterial infection in zebrafish. The Journal of infectious diseases. 220(3):524-534
|
Jiang, N., Rasmussen, J.P., Clanton, J.A., Rosenberg, M.F., Luedke, K.P., Cronan, M.R., Parker, E.D., Kim, H.J., Vaughan, J.C., Sagasti, A., Parrish, J.Z. (2019) A conserved morphogenetic mechanism for epidermal ensheathment of nociceptive sensory neurites. eLIFE. 8:
|
|
|
Lee, D.A., Liu, J., Hong, Y., Lane, J.M., Hill, A.J., Hou, S.L., Wang, H., Oikonomou, G., Pham, U., Engle, J., Saxena, R., Prober, D.A. (2019) Evolutionarily conserved regulation of sleep by epidermal growth factor receptor signaling. Science advances. 5:eaax4249
|
Li, W., Zhang, Y., Han, B., Li, L., Li, M., Lu, X., Chen, C., Lu, M., Zhang, Y., Jia, X., Zhu, Z., Tong, X., Zhang, B. (2019) One-step efficient generation of dual-function conditional knockout and geno-tagging alleles in zebrafish. eLIFE. 8:
|
Lin, X., Zhou, Q., Zhao, C., Lin, G., Xu, J., Wen, Z. (2019) An Ectoderm-Derived Myeloid-like Cell Population Functions as Antigen Transporters for Langerhans Cells in Zebrafish Epidermis. Developmental Cell. 49(4):605-617.e5
|
Mackin, R.D., Frey, R.A., Gutierrez, C., Farre, A.A., Kawamura, S., Mitchell, D.M., Stenkamp, D.L. (2019) Endocrine regulation of multichromatic color vision. Proceedings of the National Academy of Sciences of the United States of America. 116(34):16882-16891
|
Marín-Juez, R., El-Sammak, H., Helker, C.S.M., Kamezaki, A., Mullapuli, S.T., Bibli, S.I., Foglia, M.J., Fleming, I., Poss, K.D., Stainier, D.Y.R. (2019) Coronary Revascularization During Heart Regeneration Is Regulated by Epicardial and Endocardial Cues and Forms a Scaffold for Cardiomyocyte Repopulation. Developmental Cell. 51:503-515.e4
|
Matty, M.A., Knudsen, D.R., Walton, E.M., Beerman, R.W., Cronan, M.R., Pyle, C.J., Hernandez, R.E., Tobin, D.M. (2019) Potentiation of P2RX7 as a host-directed strategy for control of mycobacterial infection. eLIFE. 8:
|
Mosaliganti, K.R., Swinburne, I.A., Chan, C.U., Obholzer, N.D., Green, A.A., Tanksale, S., Mahadevan, L., Megason, S.G. (2019) Size control of the inner ear via hydraulic feedback. eLIFE. 8:
|
Mu, Y., Bennett, D.V., Rubinov, M., Narayan, S., Yang, C.T., Tanimoto, M., Mensh, B.D., Looger, L.L., Ahrens, M.B. (2019) Glia Accumulate Evidence that Actions Are Futile and Suppress Unsuccessful Behavior. Cell. 178(1):27-43.e19
|
Mullapudi, S.T., Boezio, G.L.M., Rossi, A., Marass, M., Matsuoka, R.L., Matsuda, H., Helker, C.S.M., Yang, Y.H.C., Stainier, D.Y.R. (2019) Disruption of the pancreatic vasculature in zebrafish affects islet architecture and function. Development (Cambridge, England). 146(21):
|
Nishiya, N., Murai, M., Hosoda, A., Yonezawa, H., Omori, N. (2019) Bucillamine Prevents Afatinib-Mediated Inhibition of Epidermal Growth Factor Receptor Signaling. Pharmaceuticals (Basel, Switzerland). 12(4):
|
Rissone, A., Jimenez, E., Bishop, K., Carrington, B., Slevin, C., Wincovitch, S.M., Sood, R., Candotti, F., Burgess, S.M. (2019) A model for reticular dysgenesis shows impaired sensory organ development and hair cell regeneration linked to cellular stress. Disease models & mechanisms. 12(12):
|
|
|
|
|
Salem, V., Silva, L.D., Suba, K., Georgiadou, E., Neda Mousavy Gharavy, S., Akhtar, N., Martin-Alonso, A., Gaboriau, D.C.A., Rothery, S.M., Stylianides, T., Carrat, G., Pullen, T.J., Singh, S.P., Hodson, D.J., Leclerc, I., Shapiro, A.M.J., Marchetti, P., Briant, L.J.B., Distaso, W., Ninov, N., Rutter, G.A. (2019) Leader β-cells coordinate Ca2+ dynamics across pancreatic islets in vivo. Nature metabolism. 1:615-629
|
Schwayer, C., Shamipour, S., Pranjic-Ferscha, K., Schauer, A., Balda, M., Tada, M., Matter, K., Heisenberg, C.P. (2019) Mechanosensation of Tight Junctions Depends on ZO-1 Phase Separation and Flow. Cell. 179:937-952.e18
|
Sharma, P., Ruel, T.D., Kocha, K.M., Liao, S., Huang, P. (2019) Single cell dynamics of embryonic muscle progenitor cells in zebrafish. Development (Cambridge, England). 146(14):
|
Talbot, J.C., Teets, E.M., Ratnayake, D., Duy, P.Q., Currie, P.D., Amacher, S.L. (2019) Muscle precursor cell movements in zebrafish are dynamic and require six-family genes. Development (Cambridge, England). 146(10):
|
Teixeira Rosa, J., Oralová, V., Larionova, D., Eisenhoffer, G.T., Eckhard Witten, P., Huysseune, A. (2019) Periderm invasion contributes to epithelial formation in the teleost pharynx. Scientific Reports. 9:10082
|
Xie, M., Kamenev, D., Kaucka, M., Kastriti, M.E., Zhou, B., Artemov, A.V., Storer, M., Fried, K., Adameyko, I., Dyachuk, V., Chagin, A.S. (2019) Schwann cell precursors contribute to skeletal formation during embryonic development in mice and zebrafish. Proceedings of the National Academy of Sciences of the United States of America. 116(30):15068-15073
|
Ye, L., Mueller, O., Bagwell, J., Bagnat, M., Liddle, R.A., Rawls, J.F. (2019) High fat diet induces microbiota-dependent silencing of enteroendocrine cells. eLIFE. 8:
|
|
|
Cook, Z.T., Brockway, N.L., Tobias, Z.J.C., Pajarla, J., Boardman, I.S., Ippolito, H., Nkombo-Nkoula, S., Weissman, T.A. (2018) Combining near-infrared fluorescence with Brainbow to visualize expression of specific genes within a multicolor context. Molecular biology of the cell. 30(4):491-505
|
Cronan, M.R., Matty, M.A., Rosenberg, A.F., Blanc, L., Pyle, C.J., Espenschied, S.T., Rawls, J.F., Dartois, V., Tobin, D.M. (2018) An explant technique for high-resolution imaging and manipulation of mycobacterial granulomas. Nature Methods. 15:1098-1107
|
de Oliveira, S., Houseright, R.A., Graves, A.L., Golenberg, N., Korte, B.G., Miskolci, V., Huttenlocher, A. (2018) Metformin modulates innate immune-mediated inflammation and early progression of NAFLD-associated hepatocellular carcinoma in zebrafish. Journal of hepatology. 70(4):710-721
|
|
|
Freudenblum, J., Iglesias, J.A., Hermann, M., Walsen, T., Wilfinger, A., Meyer, D., Kimmel, R.A. (2018) In vivo imaging of emerging endocrine cells reveals a requirement for PI3K-regulated motility in pancreatic islet morphogenesis.. Development (Cambridge, England). 145(3)
|
Gauvrit, S., Villasenor, A., Strilic, B., Kitchen, P., Collins, M.M., Marín-Juez, R., Guenther, S., Maischein, H.M., Fukuda, N., Canham, M.A., Brickman, J.M., Bogue, C.W., Jayaraman, P.S., Stainier, D.Y.R. (2018) HHEX is a transcriptional regulator of the VEGFC/FLT4/PROX1 signaling axis during vascular development. Nature communications. 9:2704
|
Guesmi, K., Abdeladim, L., Tozer, S., Mahou, P., Kumamoto, T., Jurkus, K., Rigaud, P., Loulier, K., Dray, N., Georges, P., Hanna, M., Livet, J., Supatto, W., Beaurepaire, E., Druon, F. (2018) Dual-color deep-tissue three-photon microscopy with a multiband infrared laser. Light, science & applications. 7:12
|
|
|
Jiao, Z.F., Shang, C.F., Wang, Y.F., Yang, Z., Yang, C., Li, F.N., Xie, J.Z., Pan, J.W., Fu, L., Du, J.L. (2018) All-optical imaging and manipulation of whole-brain neuronal activities in behaving larval zebrafish. Biomedical Optics Express. 9:6154-6169
|
|
|
Lai, J.K.H., Collins, M.M., Uribe, V., Jiménez-Amilburu, V., Günther, S., Maischein, H.M., Stainier, D.Y.R. (2018) The Hippo pathway effector Wwtr1 regulates cardiac wall maturation in zebrafish. Development (Cambridge, England). 145(10)
|
LeBert, D., Squirrell, J.M., Freisinger, C., Rindy, J., Golenberg, N., Frecentes, G., Gibson, A., Eliceiri, K.W., Huttenlocher, A. (2018) Damage-induced reactive oxygen species regulate vimentin and dynamic collagen-based projections to mediate wound repair.. eLIFE. 7:e30703
|
Liu, T.L., Upadhyayula, S., Milkie, D.E., Singh, V., Wang, K., Swinburne, I.A., Mosaliganti, K.R., Collins, Z.M., Hiscock, T.W., Shea, J., Kohrman, A.Q., Medwig, T.N., Dambournet, D., Forster, R., Cunniff, B., Ruan, Y., Yashiro, H., Scholpp, S., Meyerowitz, E.M., Hockemeyer, D., Drubin, D.G., Martin, B.L., Matus, D.Q., Koyama, M., Megason, S.G., Kirchhausen, T., Betzig, E. (2018) Observing the cell in its native state: Imaging subcellular dynamics in multicellular organisms. Science (New York, N.Y.). 360(6386):
|
McClymont, S.A., Hook, P.W., Soto, A.I., Reed, X., Law, W.D., Kerans, S.J., Waite, E.L., Briceno, N.J., Thole, J.F., Heckman, M.G., Diehl, N.N., Wszolek, Z.K., Moore, C.D., Zhu, H., Akiyama, J.A., Dickel, D.E., Visel, A., Pennacchio, L.A., Ross, O.A., Beer, M.A., McCallion, A.S. (2018) Parkinson-Associated SNCA Enhancer Variants Revealed by Open Chromatin in Mouse Dopamine Neurons. American journal of human genetics. 103(6):874-892
|
Meinecke, L., Sharma, P.P., Du, H., Zhang, L., Nie, Q., Schilling, T.F. (2018) Modeling craniofacial development reveals spatiotemporal constraints on robust patterning of the mandibular arch. PLoS Computational Biology. 14:e1006569
|
Morris, J.L., Cross, S.J., Lu, Y., Kadler, K.E., Lu, Y., Dallas, S.L., Martin, P. (2018) Live imaging of collagen deposition during skin development and repair in a collagen I - GFP fusion transgenic zebrafish line. Developmental Biology. 441(1):4-11
|
Rasouli, S.J., El-Brolosy, M., Tsedeke, A.T., Bensimon-Brito, A., Ghanbari, P., Maischein, H.M., Kuenne, C., Stainier, D.Y. (2018) The flow responsive transcription factor Klf2 is required for myocardial wall integrity by modulating Fgf signaling. eLIFE. 7:
|
Rosowski, E.E., Raffa, N., Knox, B.P., Golenberg, N., Keller, N.P., Huttenlocher, A. (2018) Macrophages inhibit Aspergillus fumigatus germination and neutrophil-mediated fungal killing. PLoS pathogens. 14:e1007229
|
Singh, S.P., Janjuha, S., Chaudhuri, S., Reinhardt, S., Kränkel, A., Dietz, S., Eugster, A., Bilgin, H., Korkmaz, S., Zararsız, G., Ninov, N., Reid, J.E. (2018) Machine learning based classification of cells into chronological stages using single-cell transcriptomics. Scientific Reports. 8:17156
|
|
|
Swinburne, I.A., Mosaliganti, K.R., Upadhyayula, S., Liu, T.L., Hildebrand, D.G.C., Tsai, T.Y., Chen, A., Al-Obeidi, E., Fass, A.K., Malhotra, S., Engert, F., Lichtman, J.W., Kirchausen, T., Betzig, E., Megason, S.G. (2018) Lamellar projections in the endolymphatic sac act as a relief valve to regulate inner ear pressure. eLIFE. 7
|
Sánchez-Iranzo, H., Galardi-Castilla, M., Minguillón, C., Sanz-Morejón, A., González-Rosa, J.M., Felker, A., Ernst, A., Guzmán-Martínez, G., Mosimann, C., Mercader, N. (2018) Tbx5a lineage tracing shows cardiomyocyte plasticity during zebrafish heart regeneration. Nature communications. 9:428
|
|
|
Troll, J.V., Hamilton, M.K., Abel, M.L., Ganz, J., Bates, J.M., Stephens, W.Z., Melancon, E., van der Vaart, M., Meijer, A.H., Distel, M., Eisen, J.S., Guillemin, K. (2018) Microbiota promote secretory cell determination in the intestinal epithelium by modulating host Notch signaling. Development (Cambridge, England). 145(4)
|
Uribe, V., Ramadass, R., Dogra, D., Rasouli, S.J., Gunawan, F., Nakajima, H., Chiba, A., Reischauer, S., Mochizuki, N., Stainier, D.Y.R. (2018) In vivo analysis of cardiomyocyte proliferation during trabeculation.. Development (Cambridge, England). 145(14):
|
Zhang, M., Di Martino, J.S., Bowman, R.L., Campbell, N.R., Baksh, S.C., Simon-Vermot, T., Kim, I.S., Haldeman, P., Mondal, C., Yong-Gonzalez, V., Abu-Akeel, M., Merghoub, T., Jones, D.R., Zhu, X.G., Arora, A., Ariyan, C.E., Birsoy, K., Wolchok, J.D., Panageas, K.S., Hollmann, T.J., Bravo-Cordero, J.J., White, R.M. (2018) Adipocyte-derived lipids mediate melanoma progression via FATP proteins. Cancer discovery. 8(8):1006-1025
|
Zimmermann, M.J.Y., Nevala, N.E., Yoshimatsu, T., Osorio, D., Nilsson, D.E., Berens, P., Baden, T. (2018) Zebrafish Differentially Process Color across Visual Space to Match Natural Scenes. Current biology : CB. 28(13):2018-2032.e5
|
Anelli, V., Villefranc, J.A., Chhangawala, S., Martinez-McFaline, R., Riva, E., Nguyen, A., Verma, A., Bareja, R., Chen, Z., Scognamiglio, T., Elemento, O., Houvras, Y. (2017) Oncogenic BRAF disrupts thyroid morphogenesis and function via Twist expression. eLIFE. 6
|
Athanasiadis, E.I., Botthof, J.G., Andres, H., Ferreira, L., Lio, P., Cvejic, A. (2017) Single-cell RNA-sequencing uncovers transcriptional states and fate decisions in haematopoiesis. Nature communications. 8:2045
|
|
|
Cutrale, F., Trivedi, V., Trinh, L.A., Chiu, C.L., Choi, J.M., Artiga, M.S., Fraser, S.E. (2017) Hyperspectral phasor analysis enables multiplexed 5D in vivo imaging. Nature Methods. 14(2):149-152
|
Dogra, D., Ahuja, S., Kim, H.T., Rasouli, S.J., Stainier, D.Y.R., Reischauer, S. (2017) Opposite effects of Activin type 2 receptor ligands on cardiomyocyte proliferation during development and repair. Nature communications. 8:1902
|
|
|
Feng, D., Chen, Z., Yang, K., Miao, S., Xu, B., Kang, Y., Xie, H., Zhao, C. (2017) The cytoplasmic tail of rhodopsin triggers rapid rod degeneration in kinesin-2 mutants. The Journal of biological chemistry. 292(42):17375-17386
|
Freifeld, L., Odstrcil, I., Förster, D., Ramirez, A., Gagnon, J.A., Randlett, O., Costa, E.K., Asano, S., Celiker, O.T., Gao, R., Martin-Alarcon, D.A., Reginato, P., Dick, C., Chen, L., Schoppik, D., Engert, F., Baier, H., Boyden, E.S. (2017) Expansion microscopy of zebrafish for neuroscience and developmental biology studies. Proceedings of the National Academy of Sciences of the United States of America. 114(50):E10799-E10808
|
Fukuda, R., Gunawan, F., Beisaw, A., Jimenez-Amilburu, V., Maischein, H.M., Kostin, S., Kawakami, K., Stainier, D.Y. (2017) Proteolysis regulates cardiomyocyte maturation and tissue integration. Nature communications. 8:14495
|
Förster, D., Arnold-Ammer, I., Laurell, E., Barker, A.J., Fernandes, A.M., Finger-Baier, K., Filosa, A., Helmbrecht, T.O., Kölsch, Y., Kühn, E., Robles, E., Slanchev, K., Thiele, T.R., Baier, H., Kubo, F. (2017) Genetic targeting and anatomical registration of neuronal populations in the zebrafish brain with a new set of BAC transgenic tools. Scientific Reports. 7:5230
|
|
|
Kanow, M.A., Giarmarco, M.M., Jankowski, C.S., Tsantilas, K., Engel, A.L., Du, J., Linton, J.D., Farnsworth, C.C., Sloat, S.R., Rountree, A., Sweet, I.R., Lindsay, K.J., Parker, E.D., Brockerhoff, S.E., Sadilek, M., Chao, J.R., Hurley, J.B. (2017) Biochemical adaptations of the retina and retinal pigment epithelium support a metabolic ecosystem in the vertebrate eye. eLIFE. 6
|
Kuri, P., Ellwanger, K., Kufer, T.A., Leptin, M., Bajoghli, B. (2017) A high-sensitivity, bi-directional reporter to monitor NF-κB activity in cell culture and zebrafish in real-time. Journal of Cell Science. 130(3):648-657
|
Kuri, P., Schieber, N.L., Thumberger, T., Wittbrodt, J., Schwab, Y., Leptin, M. (2017) Dynamics of in vivo ASC speck formation. The Journal of cell biology. 216(9):2891-2909
|
Madigan, C.A., Cambier, C.J., Kelly-Scumpia, K.M., Scumpia, P.O., Cheng, T.Y., Zailaa, J., Bloom, B.R., Moody, D.B., Smale, S.T., Sagasti, A., Modlin, R.L., Ramakrishnan, L. (2017) A Macrophage Response to Mycobacterium leprae Phenolic Glycolipid Initiates Nerve Damage in Leprosy. Cell. 170:973-985.e10
|
|
|
|
|
|
|
Roh-Johnson, M., Shah, A.N., Stonick, J.A., Poudel, K.R., Kargl, J., Yang, G.H., di Martino, J., Hernandez, R.E., Gast, C.E., Zarour, L.R., Antoku, S., Houghton, A.M., Bravo-Cordero, J.J., Wong, M.H., Condeelis, J., Moens, C.B. (2017) Macrophage-Dependent Cytoplasmic Transfer during Melanoma Invasion In Vivo. Developmental Cell. 43:549-562.e6
|
Singh, S.P., Janjuha, S., Hartmann, T., Kayisoglu, Ö., Konantz, J., Birke, S., Murawala, P., Alfar, E.A., Murata, K., Eugster, A., Tsuji, N., Morrissey, E.R., Brand, M., Ninov, N. (2017) Different developmental histories of beta-cells generate functional and proliferative heterogeneity during islet growth. Nature communications. 8:664
|
White, D.T., Sengupta, S., Saxena, M.T., Xu, Q., Hanes, J., Ding, D., Ji, H., Mumm, J.S. (2017) Immunomodulation-accelerated neuronal regeneration following selective rod photoreceptor cell ablation in the zebrafish retina. Proceedings of the National Academy of Sciences of the United States of America. 114(18):E3719-E3728
|
|
|
Berg, R.D., Levitte, S., O'Sullivan, M.P., O'Leary, S.M., Cambier, C.J., Cameron, J., Takaki, K.K., Moens, C.B., Tobin, D.M., Keane, J., Ramakrishnan, L. (2016) Lysosomal Disorders Drive Susceptibility to Tuberculosis by Compromising Macrophage Migration. Cell. 165:139-152
|
Chen, A., Chiu, C.N., Mosser, E.A., Kahn, S., Spence, R., Prober, D.A. (2016) QRFP and Its Receptors Regulate Locomotor Activity and Sleep in Zebrafish. The Journal of neuroscience : the official journal of the Society for Neuroscience. 36(6):1823-40
|
Chen, C.H., Puliafito, A., Cox, B.D., Primo, L., Fang, Y., Di Talia, S., Poss, K.D. (2016) Multicolor Cell Barcoding Technology for Long-Term Surveillance of Epithelial Regeneration in Zebrafish. Developmental Cell. 36:668-80
|
|
|
Cronan, M.R., Beerman, R.W., Rosenberg, A.F., Saelens, J.W., Johnson, M.G., Oehlers, S.H., Sisk, D.M., Jurcic Smith, K.L., Medvitz, N.A., Miller, S.E., Trinh, L.A., Fraser, S.E., Madden, J.F., Turner, J., Stout, J.E., Lee, S., Tobin, D.M. (2016) Macrophage Epithelial Reprogramming Underlies Mycobacterial Granuloma Formation and Promotes Infection. Immunity. 45:861-876
|
|
|
|
|
DeRossi, C., Vacaru, A., Rafiq, R., Cinaroglu, A., Imrie, D., Nayar, S., Baryshnikova, A., Milev, M.P., Stanga, D., Kadakia, D., Gao, N., Chu, J., Freeze, H.H., Lehrman, M.A., Sacher, M., Sadler, K.C. (2016) trappc11 is required for protein glycosylation in zebrafish and humans. Molecular biology of the cell. 27(8):1220-34
|
Di Donato, V., De Santis, F., Auer, T., Testa, N., Sánchez-Iranzo, H., Mercader, N., Concordet, J.P., Del Bene, F. (2016) 2C-Cas9: a versatile tool for clonal analysis of gene function. Genome research. 26(5):681-92
|
Esterberg, R., Linbo, T., Pickett, S.B., Wu, P., Ou, H.C., Rubel, E.W., Raible, D.W. (2016) Mitochondrial calcium uptake underlies ROS generation during aminoglycoside-induced hair cell death. The Journal of Clinical Investigation. 126(9):3556-66
|
Fowler, D.K., Stewart, S., Seredick, S., Eisen, J.S., Stankunas, K., Washbourne, P. (2016) A MultiSite Gateway Toolkit for Rapid Cloning of Vertebrate Expression Constructs with Diverse Research Applications. PLoS One. 11:e0159277
|
Lisse, T.S., Middleton, L.J., Pellegrini, A.D., Martin, P.B., Spaulding, E.L., Lopes, O., Brochu, E.A., Carter, E.V., Waldron, A., Rieger, S. (2016) Paclitaxel-induced epithelial damage and ectopic MMP-13 expression promotes neurotoxicity in zebrafish. Proceedings of the National Academy of Sciences of the United States of America. 113(15):E2189-98
|
Monroe, J.D., Manning, D.P., Uribe, P.M., Bhandiwad, A., Sisneros, J.A., Smith, M.E., Coffin, A.B. (2016) Hearing sensitivity differs between zebrafish lines used in auditory research. Hearing Research. 341:220-231
|
Nicolás-Pérez, M., Kuchling, F., Letelier, J., Polvillo, R., Wittbrodt, J.,Martínez-Morales, J.R. (2016) Analysis of cellular behavior and cytoskeletal dynamics reveal a constriction mechanism driving optic cup morphogenesis. eLIFE. 5
|
Pestel, J., Ramadass, R., Gauvrit, S., Helker, C., Herzog, W., Stainier, D.Y. (2016) Real-time 3D visualization of cellular rearrangements during cardiac valve formation. Development (Cambridge, England). 143:2217-27
|
Shin, M., Beane, T., Quillien, A., Male, I., Zhu, L.J., Lawson, N.D. (2016) Vegfa signals through ERK to promote angiogenesis, but not artery differentiation. Development (Cambridge, England). 143(20):3796-3805
|
|
|
Stegmaier, J., Amat, F., Lemon, W.C., McDole, K., Wan, Y., Teodoro, G., Mikut, R., Keller, P.J. (2016) Real-Time Three-Dimensional Cell Segmentation in Large-Scale Microscopy Data of Developing Embryos. Developmental Cell. 36:225-240
|
Thambyrajah, R., Ucanok, D., Jalali, M., Hough, Y., Wilkinson, R.N., McMahon, K., Moore, C., Gering, M. (2016) A gene trap transposon eliminates haematopoietic expression of zebrafish Gfi1aa, but does not interfere with haematopoiesis. Developmental Biology. 417(1):25-39
|
Yu, D., Dong, Z., Gustafson, W.C., Ruiz-González, R., Signor, L., Marzocca, F., Borel, F., Klassen, M.P., Makhijani, K., Royant, A., Jan, Y.N., Weiss, W.A., Guo, S., Shu, X. (2016) Rational design of a monomeric and photostable far-red fluorescent protein for fluorescence imaging in vivo. Protein science : a publication of the Protein Society. 25(2):308-15
|
Arturo Gutierrez-Triana, J., Herget, U., Castillo-Ramirez, L.A., Lutz, M., Yeh, C.M., De Marco, R.J., Ryu, S. (2015) Manipulation of interrenal cell function in developing zebrafish using genetically targeted ablation and an optogenetic tool. Endocrinology. 156(9):3394-401
|
Beerman, R.W., Matty, M.A., Au, G.G., Looger, L.L., Choudhury, K.R., Keller, P.J., Tobin, D.M. (2015) Direct In Vivo Manipulation and Imaging of Calcium Transients in Neutrophils Identify a Critical Role for Leading-Edge Calcium Flux. Cell Reports. 13(10):2107-17
|
Cruz, I.A., Kappedal, R., Mackenzie, S.M., Hailey, D.W., Hoffman, T.L., Schilling, T.F., Raible, D.W. (2015) Robust regeneration of adult zebrafish lateral line hair cells reflects continued precursor pool maintenance. Developmental Biology. 402(2):229-38
|
MacDonald, R.B., Randlett, O., Oswald, J., Yoshimatsu, T., Franze, K., Harris, W.A. (2015) Müller glia provide essential tensile strength to the developing retina. The Journal of cell biology. 210:1075-83
|
McGorty, R., Liu, H., Kamiyama, D., Dong, Z., Guo, S., Huang, B. (2015) Open-top selective plane illumination microscope for conventionally mounted specimens. Optics express. 23:16142-16153
|
Oehlers, S.H., Cronan, M.R., Scott, N.R., Thomas, M.I., Okuda, K.S., Walton, E.M., Beerman, R.W., Crosier, P.S., Tobin, D.M. (2015) Interception of host angiogenic signalling limits mycobacterial growth. Nature. 517(7536):612-5
|
Pagán, A.J., Yang, C.T., Cameron, J., Swaim, L.E., Ellett, F., Lieschke, G.J., Ramakrishnan, L. (2015) Myeloid Growth Factors Promote Resistance to Mycobacterial Infection by Curtailing Granuloma Necrosis through Macrophage Replenishment. Cell Host & Microbe. 18:15-26
|
|
|
Romero-Carvajal, A., Navajas Acedo, J., Jiang, L., Kozlovskaja-Gumbrienė, A., Alexander, R., Li, H., Piotrowski, T. (2015) Regeneration of Sensory Hair Cells Requires Localized Interactions between the Notch and Wnt Pathways. Developmental Cell. 34(3):267-82
|
Sato, T., Sato, F., Kamezaki, A., Sakaguchi, K., Tanigome, R., Kawakami, K., Sehara-Fujisawa, A. (2015) Neuregulin 1 Type II-ErbB Signaling Promotes Cell Divisions Generating Neurons from Neural Progenitor Cells in the Developing Zebrafish Brain. PLoS One. 10:e0127360
|
Toro, C., Trapani, J.G., Pacentine, I., Maeda, R., Sheets, L., Mo, W., Nicolson, T. (2015) Dopamine Modulates the Activity of Sensory Hair Cells. The Journal of neuroscience : the official journal of the Society for Neuroscience. 35(50):16494-16503
|
|
|
|
|
Compagnon, J., Barone, V., Rajshekar, S., Kottmeier, R., Pranjic-Ferscha, K., Behrndt, M., Heisenberg, C. (2014) The Notochord Breaks Bilateral Symmetry by Controlling Cell Shapes in the Zebrafish Laterality Organ. Developmental Cell. 31:774-783
|
Durdu, S., Iskar, M., Revenu, C., Schieber, N., Kunze, A., Bork, P., Schwab, Y., Gilmour, D. (2014) Luminal signalling links cell communication to tissue architecture during organogenesis. Nature. 515(7525):120-4
|
Fischer, B., Metzger, M., Richardson, R., Knyphausen, P., Ramezani, T., Franzen, R., Schmelzer, E., Bloch, W., Carney, T.J., and Hammerschmidt, M. (2014) p53 and TAp63 promote keratinocyte proliferation and differentiation in breeding tubercles of the zebrafish. PLoS Genetics. 10(1):e1004048
|
|
|
|
|
|
|
Miyasaka, N., Arganda-Carreras, I., Wakisaka, N., Masuda, M., Sümbül, U., Seung, H.S., Yoshihara, Y. (2014) Olfactory projectome in the zebrafish forebrain revealed by genetic single-neuron labelling. Nature communications. 5:3639
|
Raymond, P.A., Colvin, S.M., Jabeen, Z., Nagashima, M., Barthel, L.K., Hadidjojo, J., Popova, L., Pejaver, V.R., and Lubensky, D.K. (2014) Patterning the cone mosaic array in zebrafish retina requires specification of ultraviolet-sensitive cones. PLoS One. 9(1):e85325
|
Revenu, C., Streichan, S., Donà, E., Lecaudey, V., Hufnagel, L., Gilmour, D. (2014) Quantitative cell polarity imaging defines leader-to-follower transitions during collective migration and the key role of microtubule-dependent adherens junction formation. Development (Cambridge, England). 141:1282-91
|
|
|
|
|
|
|
|
|
Xiong, F., Ma, W., Hiscock, T.W., Mosaliganti, K.R., Tentner, A.R., Brakke, K.A., Rannou, N., Gelas, A., Souhait, L., Swinburne, I.A., Obholzer, N.D., Megason, S.G. (2014) Interplay of Cell Shape and Division Orientation Promotes Robust Morphogenesis of Developing Epithelia. Cell. 159:415-427
|
Zelina, P., Blockus, H., Zagar, Y., Péres, A., Friocourt, F., Wu, Z., Rama, N., Fouquet, C., Hohenester, E., Tessier-Lavigne, M., Schweitzer, J., Roest Crollius, H., Chédotal, A. (2014) Signaling switch of the axon guidance receptor Robo3 during vertebrate evolution. Neuron. 84:1258-72
|
|
|
|
|
Donà, E., Barry, J.D., Valentin, G., Quirin, C., Khmelinskii, A., Kunze, A., Durdu, S., Newton, L.R., Fernandez-Minan, A., Huber, W., Knop, M., and Gilmour, D. (2013) Directional tissue migration through a self-generated chemokine gradient. Nature. 503(7475):285-9
|
Kochhan, E., Lenard, A., Ellertsdottir, E., Herwig, L., Affolter, M., Belting, H.G., and Siekmann, A.F. (2013) Blood Flow Changes Coincide with Cellular Rearrangements during Blood Vessel Pruning in Zebrafish Embryos. PLoS One. 8(10):e75060
|
|
|
Ma, E.Y., Lewis, A., Barabas, P., Stearns, G., Suzuki, S., Krizaj, D., and Brockerhoff, S.E. (2013) Loss of Pde6 reduces cell body Ca2+ transients within photoreceptors. Cell Death & Disease. 4:e797
|
Pan, Y.A., Freundlich, T., Weissman, T.A., Schoppik, D., Wang, X.C., Zimmerman, S., Ciruna, B., Sanes, J.R., Lichtman, J.W., and Schier, A.F. (2013) Zebrabow: multispectral cell labeling for cell tracing and lineage analysis in zebrafish. Development (Cambridge, England). 140(13):2835
|
Pinto-Teixeira, F., Muzzopappa, M., Swoger, J., Mineo, A., Sharpe, J., and López-Schier, H. (2013) Intravital imaging of hair-cell development and regeneration in the zebrafish. Frontiers in neuroscience. 7:33
|
|
|
Satou, C., Kimura, Y., Hirata, H., Suster, M.L., Kawakami, K., and Higashijima, S. (2013) Transgenic tools to characterize neuronal properties of discrete populations of zebrafish neurons. Development (Cambridge, England). 140(18):3927-3931
|
Schweitzer, J., Löhr, H., Bonkowsky, J.L., Hübscher, K., and Driever, W. (2013) Sim1a and Arnt2 contribute to hypothalamo-spinal axon guidance by regulating Robo2 activity via a Robo3-dependent mechanism. Development (Cambridge, England). 140(1):93-106
|
Suzuki, S.C., Bleckert, A., Williams, P.R., Takechi, M., Kawamura, S., and Wong, R.O. (2013) Cone photoreceptor types in zebrafish are generated by symmetric terminal divisions of dedicated precursors. Proceedings of the National Academy of Sciences of the United States of America. 110(37):15109-14
|
Tay, H.G., Schulze, S.K., Compagnon, J., Foley, F.C., Heisenberg, C.P., Yost, H.J., Abdelilah-Seyfried, S., and Amack, J.D. (2013) Lethal giant larvae 2 regulates development of the ciliated organ Kupffer's vesicle. Development (Cambridge, England). 140(7):1550-1559
|
|
|
Wada, H., Ghysen, A., Asakawa, K., Abe, G., Ishitani, T., and Kawakami, K. (2013) Wnt/Dkk Negative Feedback Regulates Sensory Organ Size in Zebrafish. Current biology : CB. 23(16):1559-65
|
|
|
Xiong, F., Tentner, A.R., Huang, P., Gelas, A., Mosaliganti, K.R., Souhait, L., Rannou, N., Swinburne, I.A., Obholzer, N.D., Cowgill, P.D., Schier, A.F., and Megason, S.G. (2013) Specified neural progenitors sort to form sharp domains after noisy shh signaling. Cell. 153(3):550-561
|
Behra, M., Gallardo, V.E., Bradsher, J., Torrado, A., Elkahloun, A., Idol, J., Sheehy, J., Zonies, S., Xu, L., Shaw, K.M., Satou, C., Higashijima, S.I., Weinstein, B.M., and Burgess, S.M. (2012) Transcriptional signature of accessory cells in the lateral line, using the Tnk1bp1:EGFP transgenic zebrafish line. BMC Developmental Biology. 12(1):6
|
|
|
|
|
Pujol-Martí, J., Zecca, A., Baudoin, J.P., Faucherre, A., Asakawa, K., Kawakami, K., and Lopez-Schier, H. (2012) Neuronal birth order identifies a dimorphic sensorineural map. The Journal of neuroscience : the official journal of the Society for Neuroscience. 32(9):2976-2987
|
|
|
Alexander, C., Zuniga, E., Blitz, I.L., Wada, N., Le Pabic, P., Javidan, Y., Zhang, T., Cho, K.W., Crump, J.G., and Schilling, T.F. (2011) Combinatorial roles for BMPs and Endothelin 1 in patterning the dorsal-ventral axis of the craniofacial skeleton. Development (Cambridge, England). 138(23):5135-5146
|
|
|
|
|
Seger, C., Hargrave, M., Wang, X., Chai, R.J., Elworthy, S., and Ingham, P.W. (2011) Analysis of Pax7 expressing myogenic cells in zebrafish muscle development, injury, and models of disease. Developmental Dynamics : an official publication of the American Association of Anatomists. 240(11):2440-51
|
Wang, X., Ono, Y., Tan, S.C., Chai, R.J., Parkin, C., and Ingham, P.W. (2011) Prdm1a and miR-499 act sequentially to restrict Sox6 activity to the fast-twitch muscle lineage in the zebrafish embryo. Development (Cambridge, England). 138(20):4399-404
|
Wibowo, I., Pinto-Teixeira, F., Satou, C., Higashijima, S., and Lopez-Schier, H. (2011) Compartmentalized Notch signaling sustains epithelial mirror symmetry. Development (Cambridge, England). 138(6):1143-1152
|
|
|
Wada, H., Ghysen, A., Satou, C., Higashijima, S.I., Kawakami, K., Hamaguchi, S., and Sakaizumi, M. (2010) Dermal morphogenesis controls lateral line patterning during postembryonic development of teleost fish. Developmental Biology. 340(2):583-594
|
|
|
