ZFIN

ZFIN ID: ZDB-GENE-001103-1

ZFIN ID: ZDB-GENE-001103-1

CITATIONS (347 total)

Gene Name:	SRY-box transcription factor 9a
Gene Symbol:	sox9a

Breuer, M., Rummler, M., Singh, J., Maher, S., Zaouter, C., Jamadagni, P., Pilon, N., Willie, B.M., Patten, S.A. (2024) CHD7 regulates craniofacial cartilage development via controlling HTR2B expression. Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research. 39(4):498-512

Harboe, M., Kjaer-Sorensen, K., Füchtbauer, E.M., Fenton, R.A., Thomsen, J.S., Brüel, A., Oxvig, C. (2024) The metalloproteinase PAPP-A is required for IGF-dependent chondrocyte differentiation and organization. Scientific Reports. 14:2016120161

Jędrychowska, J., Vardanyan, V., Wieczor, M., Marciniak, A., Czub, J., Amini, R., Jain, R., Shen, H., Choi, H., Kuznicki, J., Korzh, V. (2024) Mutant analysis of Kcng4b reveals how the different functional states of the voltage-gated potassium channel regulate ear development. Developmental Biology. 513:50-62

Komiya, H., Sato, Y., Kimura, H., Kawakami, A. (2024) Independent mesenchymal progenitor pools respectively produce and maintain osteogenic and chondrogenic cells in zebrafish. Development, growth & differentiation. 66(2):161-171

Niu, X., Zhang, F., Gu, W., Zhang, B., Chen, X. (2024) FBLN2 is associated with Goldenhar syndrome and is essential for cranial neural crest cell development. Annals of the New York Academy of Sciences. 1537(1):113-128

Rani, R., Sri, N.S., Medishetti, R., Chatti, K., Sevilimedu, A. (2024) Loss of FMRP affects ovarian development and behaviour through multiple pathways in a zebrafish model of fragile X syndrome. Human molecular genetics. 33(16):1391-1405

Song, W., Xia, X., Fan, Y., Zhang, B., Chen, X. (2024) Functional and Genetic Analyses Unveil the Implication of CDC27 in Hemifacial Microsomia. International Journal of Molecular Sciences. 25(9):

Sun, L., Ping, L., Fan, X., Fan, Y., Zhang, B., Chen, X. (2024) amer1 Regulates Zebrafish Craniofacial Development by Interacting with the Wnt/β-Catenin Pathway. International Journal of Molecular Sciences. 25(2):

Zhu, M., Li, Y., Shen, Q., Gong, Z., Liu, D. (2024) Sex disparity in zebrafish liver cell proliferation after partial hepatectomy is regulated by sex hormone receptors and the S100A1-YAP signaling cascade. Disease models & mechanisms. 17(10):

Chen, H.J., Barske, L., Talbot, J.C., Dinwoodie, O.M., Roberts, R.R., Farmer, D.T., Jimenez, C., Merrill, A.E., Tucker, A.S., Crump, J.G. (2023) Nuclear receptor Nr5a2 promotes diverse connective tissue fates in the jaw. Developmental Cell. 58(6):461-473.e7

Dalle Carbonare, L., Minoia, A., Braggio, M., Bertacco, J., Piritore, F.C., Zouari, S., Vareschi, A., Elia, R., Vedovi, E., Scumà, C., Carlucci, M., Bhandary, L., Mottes, M., Romanelli, M.G., Valenti, M.T. (2023) Modulation of miR-146b Expression during Aging and the Impact of Physical Activity on Its Expression and Chondrogenic Progenitors. International Journal of Molecular Sciences. 24(17):

Daponte, V., Tonelli, F., Masiero, C., Syx, D., Exbrayat-Héritier, C., Biggiogera, M., Willaert, A., Rossi, A., Coucke, P.J., Ruggiero, F., Forlino, A. (2023) Cell differentiation and matrix organization are differentially affected during bone formation in osteogenesis imperfecta zebrafish models with different genetic defects impacting collagen type I structure. Matrix biology : journal of the International Society for Matrix Biology. 121:105-126

Dranow, D.B., Le Pabic, P., Schilling, T.F. (2023) The non-canonical Wnt receptor Ror2 is required for cartilage cell polarity and morphogenesis of the craniofacial skeleton in zebrafish. Development (Cambridge, England). 150(8):

Guillemyn, B., De Saffel, H., Bek, J.W., Tapaneeyaphan, P., De Clercq, A., Jarayseh, T., Debaenst, S., Willaert, A., De Rycke, R., Byers, P.H., Rosseel, T., Coucke, P., Blaumeiser, B., Syx, D., Malfait, F., Symoens, S. (2023) Syntaxin 18 Defects in Human and Zebrafish Unravel Key Roles in Early Cartilage and Bone Development. Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research. 38(11):1718-1730

Koosha, E., Brenna, C.T.A., Ashique, A.M., Jain, N., Ovens, K., Koike, T., Kitagawa, H., Eames, B.F. (2023) Proteoglycan inhibition of canonical BMP-dependent cartilage maturation delays endochondral ossification. Development (Cambridge, England). 151(2):

Niu, X., Zhang, F., Ping, L., Wang, Y., Zhang, B., Wang, J., Chen, X. (2023) vwa1 Knockout in Zebrafish Causes Abnormal Craniofacial Chondrogenesis by Regulating FGF Pathway. Genes. 14(4):

Raterman, S.T., Von Den Hoff, J.W., Dijkstra, S., De Vriend, C., Te Morsche, T., Broekman, S., Zethof, J., De Vrieze, E., Wagener, F.A.D.T.G., Metz, J.R. (2023) Disruption of the foxe1 gene in zebrafish reveals conserved functions in development of the craniofacial skeleton and the thyroid. Frontiers in cell and developmental biology. 11:11438441143844

Yang, S., Xu, X., Yin, Z., Liu, Y., Wang, H., Guo, J., Wang, F., Bao, Y., Zhang, T., Sun, S. (2023) nkx2.3 is responsible for posterior pharyngeal cartilage formation by inhibiting Fgf signaling. Heliyon. 9:e21915e21915

Yu, E.P.Y., Saxena, V., Perin, S., Ekker, M. (2023) Loss of dlx5a/dlx6a Locus Alters Non-Canonical Wnt Signaling and Meckel's Cartilage Morphology. Biomolecules. 13(9):

Zhang, J., Li, P., Sun, L., Jiang, N., Guo, W., Wang, J., Gao, F., Li, J., Li, H., Zhang, J., Mu, H., Hu, Y., Cui, X. (2023) Knockout of miR-184 in zebrafish leads to ocular abnormalities by elevating p21 levels. FASEB journal : official publication of the Federation of American Societies for Experimental Biology. 37:e22927e22927

Dash, S., Trainor, P.A. (2022) Nucleolin loss of function leads to aberrant Fibroblast Growth Factor signaling and craniofacial anomalies. Development (Cambridge, England). 149(12)

Desvignes, T., Robbins, A.E., Carey, A.Z., Bailon-Zambrano, R., Nichols, J.T., Postlethwait, J.H., Stankunas, K. (2022) Coordinated patterning of zebrafish caudal fin symmetry by a central and two peripheral organizers. Developmental Dynamics : an official publication of the American Association of Anatomists. 251(8):1306-1321

Fabian, P., Tseng, K.C., Thiruppathy, M., Arata, C., Chen, H.J., Smeeton, J., Nelson, N., Crump, J.G. (2022) Lifelong single-cell profiling of cranial neural crest diversification in zebrafish. Nature communications. 13:13

Kraus, J.M., Giovannone, D., Rydzik, R., Balsbaugh, J.L., Moss, I.L., Schwedler, J.L., Bertrand, J.Y., Traver, D., Hankenson, K.D., Crump, J.G., Youngstrom, D.W. (2022) Notch signaling enhances bone regeneration in the zebrafish mandible. Development (Cambridge, England). 149(5)

Norcross, R.G., Abdelmoti, L., Rouchka, E.C., Andreeva, K., Tussey, O., Landestoy, D., Galperin, E. (2022) Shoc2 controls ERK1/2-driven neural crest development by balancing components of the extracellular matrix. Developmental Biology. 492:156-171

Okada, K., Aoki, K., Tabei, T., Sugio, K., Imai, K., Bonkohara, Y., Kamachi, Y. (2022) Key sequence features of CRISPR RNA for dual-guide CRISPR-Cas9 ribonucleoprotein complexes assembled with wild-type or HiFi Cas9. Nucleic acids research. 50(5):2854-2871

Okeke, C., Paulding, D., Riedel, A., Paudel, S., Phelan, C., Teng, C.S., Barske, L. (2022) Control of cranial ectomesenchyme fate by Nr2f nuclear receptors. Development (Cambridge, England). 149(23):

Paudel, S., Gjorcheska, S., Bump, P., Barske, L. (2022) Patterning of cartilaginous condensations in the developing facial skeleton. Developmental Biology. 486:44-55

Smeeton, J., Natarajan, N., Anderson, T., Tseng, K.C., Fabian, P., Crump, J.G. (2022) Regeneration of Jaw Joint Cartilage in Adult Zebrafish. Frontiers in cell and developmental biology. 9:777787

Tian, Y., Wang, W., Lautrup, S., Zhao, H., Li, X., Law, P.W.N., Dinh, N.D., Fang, E.F., Cheung, H.H., Chan, W.Y. (2022) WRN promotes bone development and growth by unwinding SHOX-G-quadruplexes via its helicase activity in Werner Syndrome. Nature communications. 13:5456

Wang, C., Zhang, X., Wang, X., Zhai, Y., Li, M., Pan, J., Bai, Y., Rong, X., Zhou, J. (2022) Genetic deletion of hspa8 leads to selective tissue malformations in zebrafish embryonic development. Journal of Cell Science. 135(21):

Yang, S., Ning, G., Hou, Y., Cao, Y., Xu, J., Wu, J., Zhang, T., Wang, Q. (2022) Myoneurin regulates BMP signaling by competing with Ppm1a for Smad binding. iScience. 25:104495

Allanki, S., Strilic, B., Scheinberger, L., Onderwater, Y.L., Marks, A., Günther, S., Preussner, J., Kikhi, K., Looso, M., Stainier, D.Y.R., Reischauer, S. (2021) Interleukin-11 signaling promotes cellular reprogramming and limits fibrotic scarring during tissue regeneration. Science advances. 7:eabg6497

Carbonare, L.D., Bertacco, J., Marchetto, G., Cheri, S., Deiana, M., Minoia, A., Tiso, N., Mottes, M., Valenti, M.T. (2021) Methylsulfonylmethane enhances MSC chondrogenic commitment and promotes pre-osteoblasts formation. Stem Cell Research & Therapy. 12:326

Garcia-Concejo, A., Larhammar, D. (2021) Protein kinase C family evolution in jawed vertebrates. Developmental Biology. 479:77-90

Han, J., Hu, Y., Qi, Y., Yuan, C., Naeem, S., Huang, D. (2021) High temperature induced masculinization of zebrafish by down-regulation of sox9b and esr1 via DNA methylation. Journal of environmental sciences (China). 107:160-170

Hoffmann, S., Roeth, R., Diebold, S., Gogel, J., Hassel, D., Just, S., Rappold, G.A. (2021) Identification and Tissue-Specific Characterization of Novel SHOX-Regulated Genes in Zebrafish Highlights SOX Family Members Among Other Genes. Frontiers in genetics. 12:688808

Hoyle, D.J., Dranow, D.B., Schilling, T.F. (2021) Pthlha and mechanical force control early patterning of growth zones in the zebrafish craniofacial skeleton. Development (Cambridge, England). 149(2):

Kramer, A., Astuti, Y., Elfstrum, A., Lehrke, M.J., Tolar, J., Blazar, B.R., Blake, A., Taisto, M., Furcich, J.W., Nolan, E.E., Durose, W.W., Webber, B.R., Geisness, A., Wood, D.K., Lund, T. (2021) An irradiated marrow niche reveals a small non-collagenous protein mediator of homing, dermatopontin. Blood advances. 5(18):3609-3622

Liu, X., Xie, X., Liu, H. (2021) Effects of Diethylstilbestrol on Zebrafish Gonad Development and Endocrine Disruption Mechanism. Biomolecules. 11(7):

Mitchell, J.M., Sucharov, J., Pulvino, A.T., Brooks, E.P., Gillen, A.E., Nichols, J.T. (2021) The alx3 gene shapes the zebrafish neurocranium by regulating frontonasal neural crest cell differentiation timing. Development (Cambridge, England). 148(7):

Peng, W., Zhang, W., Wu, Q., Cai, S., Jia, T., Sun, J., Lin, Z., Alitongbieke, G., Chen, Y., Su, Y., Lin, J., Cai, L., Sun, Y., Pan, Y., Xue, Y. (2021) Agaricus bisporus-Derived Glucosamine Hydrochloride Facilitates Skeletal Injury Repair through Bmp Signaling in Zebrafish Osteoporosis Model. Journal of natural products. 84(4):1294-1305

Postlethwait, J.H., Massaquoi, M.S., Farnsworth, D.R., Yan, Y.L., Guillemin, K., Miller, A.C. (2021) The SARS-CoV-2 receptor and other key components of the Renin-Angiotensin-Aldosterone System related to COVID-19 are expressed in enterocytes in larval zebrafish. Biology Open. 10(3):

Pradhan, S.J., Reddy, P.C., Smutny, M., Sharma, A., Sako, K., Oak, M.S., Shah, R., Pal, M., Deshpande, O., Dsilva, G., Tang, Y., Mishra, R., Deshpande, G., Giraldez, A.J., Sonawane, M., Heisenberg, C.P., Galande, S. (2021) Satb2 acts as a gatekeeper for major developmental transitions during early vertebrate embryogenesis. Nature communications. 12:6094

Scott, K., O'Rourke, R., Winkler, C.C., Kearns, C.A., Appel, B. (2021) Temporal single-cell transcriptomes of zebrafish spinal cord pMN progenitors reveal distinct neuronal and glial progenitor populations. Developmental Biology. 479:37-50

Steeman, T.J., Rubiolo, J.A., Sánchez, L.E., Calcaterra, N.B., Weiner, A.M.J. (2021) Conservation of Zebrafish MicroRNA-145 and Its Role during Neural Crest Cell Development. Genes. 12(7):

Xia, Z., Bi, X., Yang, S., Yang, X., Song, Z., Wei, J., Xu, P., Rink, L., Min, J., Wang, F. (2021) Metal transporter Slc30a1 controls pharyngeal neural crest differentiation via the zinc-Snai2-Jag1 cascade. MedComm. 2:778-797

Zafar, I., Iftikhar, R., Ahmad, S.U., Rather, M.A. (2021) Genome wide identification, phylogeny, and synteny analysis of sox gene family in common carp (Cyprinus carpio). Biotechnology reports (Amsterdam, Netherlands). 30:e00607

Ziegler, A., Duclaux-Loras, R., Revenu, C., Charbit-Henrion, F., Begue, B., Duroure, K., Grimaud, L., Guihot, A.L., Desquiret-Dumas, V., Zarhrate, M., Cagnard, N., Mas, E., Breton, A., Edouard, T., Billon, C., Frank, M., Colin, E., Lenaers, G., Henrion, D., Lyonnet, S., Faivre, L., Alembik, Y., Philippe, A., Moulin, B., Reinstein, E., Tzur, S., Attali, R., McGillivray, G., White, S.M., Gallacher, L., Kutsche, K., Schneeberger, P., Girisha, K.M., Nayak, S.S., Pais, L., Maroofian, R., Rad, A., Vona, B., Karimiani, E.G., Lekszas, C., Haaf, T., Martin, L., Ruemmele, F., Bonneau, D., Cerf-Bensussan, N., Del Bene, F., Parlato, M. (2021) Bi-allelic variants in IPO8 cause a connective tissue disorder associated with cardiovascular defects, skeletal abnormalities, and immune dysregulation. American journal of human genetics. 108(6):1126-1137

Barske, L., Fabian, P., Hirschberger, C., Jandzik, D., Square, T., Xu, P., Nelson, N., Yu, H.V., Medeiros, D.M., Gillis, J.A., Crump, J.G. (2020) Evolution of vertebrate gill covers via shifts in an ancient Pou3f3 enhancer. Proceedings of the National Academy of Sciences of the United States of America. 117(40):24876-24884

Chen, J.W., Niu, X., King, M.J., Noedl, M.T., Tabin, C.J., Galloway, J.L. (2020) The mevalonate pathway is a critical regulator of tendon cell specification. Development (Cambridge, England). 147(12):

Fan, X., Cui, L., Hou, T., Xue, X., Zhang, S., Wang, Z. (2020) Stress responses of testicular development, inflammatory and apoptotic activities in male zebrafish (Danio rerio) under starvation. Developmental and comparative immunology. 114:103833

Fan, X., Hou, T., Guan, Y., Li, X., Zhang, S., Wang, Z. (2020) Genomic responses of DNA methylation and transcript profiles in zebrafish cells upon nutrient deprivation stress. The Science of the total environment. 722:137980

Hu, J., Chen, L., Yin, J., Yin, H., Huang, Y., Tian, J. (2020) Hyperactivity, Memory Defects, and Craniofacial Abnormalities in Zebrafish fmr1 Mutant Larvae. Behavior Genetics. 50(3):152-160

Huang, X., Wu, C., Gong, K., Chen, Q., Gu, Q., Qin, H., Zhao, C., Yu, T., Yang, L., Fu, W., Wang, Y., Qin, Q., Liu, S. (2020) Sox Gene Family Revealed Genetic Variations in Autotetraploid Carassius auratus. Frontiers in genetics. 11:804

Iwasaki, M., Yokoi, H., Suzuki, T., Kawakami, K., Wada, H. (2020) Development of the anterior lateral line system through local tissue-tissue interactions in the zebrafish head. Developmental Dynamics : an official publication of the American Association of Anatomists. 249(12):1440-1454

King, A.C., Gut, M., Zenker, A.K. (2020) Shedding new light on early sex determination in zebrafish. Archives of toxicology. 94(12):4143-4158

Lawson, N.D., Li, R., Shin, M., Grosse, A., Yukselen, O., Stone, O.A., Kucukural, A., Zhu, L. (2020) An improved zebrafish transcriptome annotation for sensitive and comprehensive detection of cell type-specific genes. eLIFE. 9:

Li, X., Zhang, F., Wu, N., Ye, D., Wang, Y., Zhang, X., Sun, Y., Zhang, Y.A. (2020) A critical role of foxp3a-positive regulatory T cells in maintaining immune homeostasis in zebrafish testis development. Journal of genetics and genomics = Yi chuan xue bao. 47(9):547-561

Liu, S., Narumi, R., Ikeda, N., Morita, O., Tasaki, J. (2020) Chemical-induced craniofacial anomalies caused by disruption of neural crest cell development in a zebrafish model. Developmental Dynamics : an official publication of the American Association of Anatomists. 249(7):794-815

Lu, H., Zhao, C., Zhu, B., Zhang, Z., Ge, W. (2020) Loss of Inhibin Advances Follicle Activation and Female Puberty Onset but Blocks Oocyte Maturation in Zebrafish. Endocrinology. 161(12):

Meng, Q., Yeung, K., Kwok, M.L., Chung, C.T., Hu, X.L., Chan, K.M. (2020) Toxic effects and transcriptome analyses of zebrafish (Danio rerio) larvae exposed to benzophenones. Environmental pollution (Barking, Essex : 1987). 265:114857

Oakes, J.A., Barnard, L., Storbeck, K.H., Cunliffe, V.T., Krone, N.P. (2020) 11β-hydroxylase loss disrupts steroidogenesis and reproductive function in zebrafish. The Journal of endocrinology. 247(2):197-212

Postlethwait, J.H., Farnsworth, D.R., Miller, A.C. (2020) An intestinal cell type in zebrafish is the nexus for the SARS-CoV-2 receptor and the Renin-Angiotensin-Aldosterone System that contributes to COVID-19 comorbidities. ZFIN Direct Data Submission.

Raja, D.A., Subramaniam, Y., Aggarwal, A., Gotherwal, V., Babu, A., Tanwar, J., Motiani, R.K., Sivasubbu, S., Gokhale, R.S., Natarajan, V.T. (2020) Histone variant dictates fate biasing of neural crest cells to melanocyte lineage. Development (Cambridge, England). 147(5):

Shull, L.C., Sen, R., Menzel, J., Goyama, S., Kurokawa, M., Artinger, K.B. (2020) The conserved and divergent roles of Prdm3 and Prdm16 in zebrafish and mouse craniofacial development. Developmental Biology. 461(2):132-144

Silic, M.R., Wu, Q., Kim, B.H., Golling, G., Chen, K.H., Freitas, R., Chubykin, A.A., Mittal, S.K., Zhang, G. (2020) Potassium Channel-Associated Bioelectricity of the Dermomyotome Determines Fin Patterning in Zebrafish. Genetics. 215(4):1067-1084

Takahashi, K., Ito, Y., Yoshimura, M., Nikaido, M., Yuikawa, T., Kawamura, A., Tsuda, S., Kage, D., Yamasu, K. (2020) A globin-family protein, cytoglobin 1, is involved in the development of neural crest-derived tissues and organs in zebrafish. Developmental Biology. 472:1-17

Wang, Y., Ping, L., Luan, X., Chen, Y., Fan, X., Li, L., Liu, Y., Wang, P., Zhang, S., Zhang, B., Chen, X. (2020) A Mutation in VWA1, Encoding von Willebrand Factor A Domain-Containing Protein 1, Is Associated With Hemifacial Microsomia. Frontiers in cell and developmental biology. 8:571004

Xiong, Y., Sun, R., Li, J., Wu, Y., Zhang, J. (2020) Latent TGF-beta binding protein-1 plays an important role in craniofacial development. Journal of applied oral science : revista FOB. 28:e20200262

Zhu, F., Wang, J., Jiao, J., Zhang, Y. (2020) Exposure to acrylamide induces skeletal developmental toxicity in zebrafish and rat embryos. Environmental pollution (Barking, Essex : 1987). 271:116395

Zhu, Z., Liu, Y., Xu, W., Liu, T., Xie, Y., Sham, K.W.Y., Sha, O., Cheng, C.H.K. (2020) Functional Characterization and Expression Analyses Show Differential Roles of Maternal and Zygotic Dgcr8 in Early Embryonic Development. Frontiers in genetics. 11:299

Zinck, N.W., Jeradi, S., Franz-Odendaal, T.A. (2020) Elucidating the early signaling cues involved in zebrafish chondrogenesis and cartilage morphology. Journal of experimental zoology. Part B, Molecular and developmental evolution. 336(1):18-31

Asad, Z., Sachidanandan, C. (2019) Chemical screens in a zebrafish model of CHARGE syndrome identifies small molecules that ameliorates disease like phenotypes in embryo. European Journal of Medical Genetics. 63(2):103661

Chen, Y., Tang, H., Wang, L., Wei, T., Liu, X., Lin, H. (2019) New insights into the role of mTORC1 in male fertility in zebrafish. General and comparative endocrinology. 286:113306

DeLaurier, A., Alvarez, C.L., Wiggins, K.J. (2019) hdac4 mediates perichondral ossification and pharyngeal skeleton development in the zebrafish. PeerJ. 7:e6167

Feng, K., Cui, X., Song, Y., Tao, B., Chen, J., Wang, J., Liu, S., Sun, Y., Zhu, Z., Trudeau, V.L., Hu, W. (2019) Gnrh3 regulates PGC proliferation and sex differentiation in developing zebrafish. Endocrinology. 161(1):

Granadeiro, L., Dirks, R.P., Ortiz-Delgado, J.B., Gavaia, P.J., Sarasquete, C., Laizé, V., Cancela, M.L., Fernández, I. (2019) Warfarin-exposed zebrafish embryos resembles human warfarin embryopathy in a dose and developmental-time dependent manner - From molecular mechanisms to environmental concerns. Ecotoxicology and environmental safety. 181:559-571

Guo, H., Du, X., Zhang, Y., Wu, J., Wang, C., Li, M., Hua, X., Zhang, X.A., Yan, J. (2019) Specific miRNA-GPCR networks regulate Sox9a/Sox9b activities to promote gonadal rejuvenation in zebrafish. Stem cells (Dayton, Ohio). 37(9):1189-1199

Jiao, F., Qiao, K., Jiang, Y., Li, S., Zhao, J., Gui, W. (2019) Integrated thyroid endocrine disrupting effect on zebrafish (Danio rario) larvae via simultaneously repressing type II iodothyronine deiodinase and activating thyroid receptor-mediated signaling following waterborne exposure to trace azocyclotin. Environmental pollution (Barking, Essex : 1987). 255:113328

Kague, E., Hughes, S.M., A Lawrence, E., Cross, S., Martin-Silverstone, E., Hammond, C.L., Hinits, Y. (2019) Scleraxis genes are required for normal musculoskeletal development and for rib growth and mineralization in zebrafish. FASEB journal : official publication of the Federation of American Societies for Experimental Biology. 33(8):9116-9130

Li, N., Oakes, J.A., Storbeck, K., Cunliffe, V.T., Krone, N. (2019) The P450 side chain cleavage enzyme Cyp11a2 facilitates steroidogenesis in zebrafish. The Journal of endocrinology. 244(2):309-321

Oakes, J.A., Li, N., Wistow, B.R.C., Griffin, A., Barnard, L., Storbeck, K.H., Cunliffe, V.T., Krone, N.P. (2019) Ferredoxin 1b deficiency leads to testis disorganization, impaired spermatogenesis and feminization in zebrafish. Endocrinology. 160(10):2401-2416

Ohgo, S., Ichinose, S., Yokota, H., Sato-Maeda, M., Shoji, W., Wada, N. (2019) Tissue regeneration during lower jaw restoration in zebrafish shows some features of epimorphic regeneration. Development, growth & differentiation. 61(7-8):419-430

Sun, X., Zhang, R., Liu, M., Chen, H., Chen, L., Luo, F., Zhang, D., Huang, J., Li, F., Ni, Z., Qi, H., Su, N., Jin, M., Yang, J., Tan, Q., Du, X., Chen, B., Huang, H., Chen, S., Yin, L., Xu, X., Deng, C., Luo, L., Xie, Y., Chen, L. (2019) Rmrp mutation disrupts chondrogenesis and bone ossification in zebrafish model of cartilage-hair hypoplasia via enhanced Wnt/β-catenin signaling. Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research. 34(11):2101-2116

Yang, X., Li, X., Gu, Q., Li, Q., Cui, Z. (2019) Nucleoporin 62-Like Protein is Required for the Development of Pharyngeal Arches through Regulation of Wnt/β-Catenin Signaling and Apoptotic Homeostasis in Zebrafish. Cells. 8(9):

Yuan, C., Zhang, C., Qi, Y., Li, D., Hu, Y., Huang, D. (2019) 2,4-Dichlorophenol induced feminization of zebrafish by down-regulating male-related genes through DNA methylation. Ecotoxicology and environmental safety. 189:110042

Zang, L., Shimada, Y., Nakayama, H., Kim, Y., Chu, D.C., Juneja, L.R., Kuroyanagi, J., Nishimura, N. (2019) RNA-seq Based Transcriptome Analysis of the Anti-Obesity Effect of Green Tea Extract Using Zebrafish Obesity Models. Molecules. 24(18)

Zhang, C., Li, D., Ge, T., Han, J., Qi, Y., Huang, D. (2019) 2,4-Dichlorophenol induces feminization of zebrafish (Danio rerio) via DNA methylation. The Science of the total environment. 708:135084

Zhang, H., Chen, Z.F., Qi, Z., Yan, S.C., Wei, W.W., Liu, G., Cai, Z. (2019) ANALYSIS OF TRANSCRIPTIONAL RESPONSE IN ZEBRAFISH ELEUTHEROEMBRYOS EXPOSED TO CLIMBAZOLE: SIGNALING PATHWAYS AND POTENTIAL BIOMARKERS. Environmental toxicology and chemistry. 38(4):794-805

Zhang, J., Qian, L., Wang, C., Teng, M., Duan, M., Zhou, Y., Chen, X., Bo, R., Wang, C., Li, X. (2019) Dysregulation of endocrine disruption, apoptosis and the transgenerational toxicity induced by spirotetramat. Chemosphere. 240:124900

Zhu, J., Zhang, D., Liu, X., Yu, G., Cai, X., Xu, C., Rong, F., Ouyang, G., Wang, J., Xiao, W. (2019) Zebrafish prmt5 arginine methyltransferase is essential for germ cell development. Development (Cambridge, England). 146(20):

Babu, A., Kamaraj, M., Basu, M., Mukherjee, D., Kapoor, S., Ranjan, S., Swamy, M.M., Kaypee, S., Scaria, V., Kundu, T.K., Sachidanandan, C. (2018) Chemical and genetic rescue of an ep300 knockdown model for Rubinstein Taybi syndrome in zebrafish. Biochimica et biophysica acta. 1864(4 Pt A):1203-1215

Barske, L., Rataud, P., Behizad, K., Del Rio, L., Cox, S.G., Crump, J.G. (2018) Essential Role of Nr2f Nuclear Receptors in Patterning the Vertebrate Upper Jaw. Developmental Cell. 44(3):337-347.e5

Cao, L., Li, L., Li, Y., Zhuang, J., Chen, Y., Luo, S., Wang, Y., Shi, Y., Chen, J., Gao, J., Zhu, X., Wan, Y., Li, F., Yuan, W., Mo, X., Ye, X., Wang, X., Zhou, Z., Dai, G., Jiang, Z., Zhu, P., Wu, X., Fan, X. (2018) Loss of the Nodal modulator Nomo results in chondrodysplasia in zebrafish. Current Molecular Medicine. 18(7):448-458

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Reyhanian Caspillo, N., Volkova, K., Hallgren, S., Olsson, P.E., Porsch-Hällström, I. (2014) Short-term treatment of adult male zebrafish (Danio Rerio) with 17alpha-ethinyl estradiol affects the transcription of genes involved in development and male sex differentiation. Comparative biochemistry and physiology. Toxicology & pharmacology : CBP. 164C:35-42

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Armas, P., Margarit, E., Mouguelar, V.S., Allende, M.L., and Calcaterra, N.B. (2013) Beyond the Binding Site: In Vivo Identification of tbx2, smarca5 and wnt5b as Molecular Targets of CNBP during Embryonic Development. PLoS One. 8(5):e63234

Dougherty, M., Kamel, G., Grimaldi, M., Gfrerer, L., Shubinets, V., Ethier, R., Hickey, G., Cornell, R.A., and Liao, E.C. (2013) Distinct requirements for wnt9a and irf6 in extension and integration mechanisms during zebrafish palate morphogenesis. Development (Cambridge, England). 140(1):76-81

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Hofsteen, P., Plavicki, J., Johnson, S.D., Peterson, R.E., and Heideman, W. (2013) Sox9b is Required for Epicardium Formation and Plays a Role in TCDD-induced Heart Malformation in Zebrafish. Molecular pharmacology. 84(3):353-60

Ignatius, M.S., Unal Eroglu, A., Malireddy, S., Gallagher, G., Nambiar, R.M., and Henion, P.D. (2013) Distinct Functional and Temporal Requirements for Zebrafish Hdac1 during Neural Crest-Derived Craniofacial and Peripheral Neuron Development. PLoS One. 8(5):e63218

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Kamel, G., Hoyos, T., Rochard, L., Dougherty, M., Tse, W., Shubinets, V., Grimaldi, M., and Liao, E.C. (2013) Requirement for frzb and fzd7a in cranial neural crest convergence and extension mechanisms during zebrafish palate and jaw morphogenesis. Developmental Biology. 381(2):423-33

Lam, P.Y., Kamei, C.N., Mangos, S., Mudumana, S., Liu, Y., and Drummond, I.A. (2013) odd-skipped related 2 is required for fin chondrogenesis in zebrafish. Developmental Dynamics : an official publication of the American Association of Anatomists. 242(11):1284-92

Larbuisson, A., Dalcq, J., Martial, J.A., and Muller, M. (2013) Fgf receptors Fgfr1a and Fgfr2 control the function of pharyngeal endoderm in late cranial cartilage development. Differentiation; research in biological diversity. 86(4-5):192-206

Lien, H.W., Yang, C.H., Cheng, C.H., Liao, Y.F., Han, Y.S., and Huang, C.J. (2013) Zinc finger protein 219-like (ZNF219L) and Sox9a regulate synuclein-gamma2 (sncgb) expression in the developing notochord of zebrafish. Biochemical and Biophysical Research Communications. 442(3-4):189-194

Lin, C.Y., Lee, H.C., Chen, H.C., Hsieh, C.C., and Tsai, H.J. (2013) Normal Function of Myf5 During Gastrulation Is Required for Pharyngeal Arch Cartilage Development in Zebrafish Embryos. Zebrafish. 10(4):486-99

Nichols, J.T., Pan, L., Moens, C.B., and Kimmel, C.B. (2013) barx1 represses joints and promotes cartilage in the craniofacial skeleton. Development (Cambridge, England). 140(13):2765-2775

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Xia, Z., Tong, X., Liang, F., Zhang, Y., Kuok, C., Zhang, Y., Liu, X., Zhu, Z., Lin, S., and Zhang, B. (2013) Eif3ba regulates cranial neural crest development by modulating p53 in zebrafish. Developmental Biology. 381(1):83-96

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Hsu, S.Y., Cheng, Y.C., Shih, H.Y., and Ouyang, P. (2012) Dissection of the role of Pinin in the development of zebrafish posterior pharyngeal cartilages. Histochemistry and cell biology. 138(1):127-140

Huitema, L.F., Apschner, A., Logister, I., Spoorendonk, K.M., Bussmann, J., Hammond, C.L., and Schulte-Merker, S. (2012) Entpd5 is essential for skeletal mineralization and regulates phosphate homeostasis in zebrafish. Proceedings of the National Academy of Sciences of the United States of America. 109(52):21372-21377

Huitema, L.F., Renn, J., Logister, I., Gray, J.K., Waltz, S.E., Flik, G., and Schulte-Merker, S. (2012) Macrophage-stimulating protein and calcium homeostasis in zebrafish. FASEB journal : official publication of the Federation of American Societies for Experimental Biology. 26(10):4092-4101

Jayasena, C.S., and Bronner, M.E. (2012) Rbms3 functions in craniofacial development by posttranscriptionally modulating TGF-β signaling. The Journal of cell biology. 199(3):453-466

Manfroid, I., Ghaye, A., Naye, F., Detry, N., Palm, S., Pan, L., Ma, T.P., Huang, W., Rovira, M., Martial, J.A., Parsons, M.J., Moens, C.B., Voz, M.L., and Peers, B. (2012) Zebrafish sox9b is crucial for hepatopancreatic duct development and pancreatic endocrine cell regeneration. Developmental Biology. 366(2):268-278

Milligan, B., Harris, N., Franz-Odendaal, T. A. (2012) Understanding morphology: a comparative study on the lower jaw in two teleost species. Zeitschrift fur angewandte Ichthyologie = Journal of applied ichthyology. 28(3):346-352

Nakamura, Y., He, X., Kato, H., Wakitani, S., Kobayashi, T., Watanabe, S., Iida, A., Tahara, H., Warman, M.L., Watanapokasin, R., and Postlethwait, J.H. (2012) Sox9 Is Upstream of MicroRNA-140 in Cartilage. Applied Biochemistry and Biotechnology. 166(1):64-71

Pradhan, A., Khalaf, H., Ochsner, S.A., Sreenivasan, R., Koskinen, J., Karlsson, M., Karlsson, J., McKenna, N.J., Orban, L., and Olsson, P.E. (2012) Activation of NF-kappaB prevents the transition from juvenile ovary to testis and promotes ovarian development in zebrafish. The Journal of biological chemistry. 287(45):37926-37938

Seritrakul, P., Samarut, E., Lama, T.T., Gibert, Y., Laudet, V., and Jackman, W.R. (2012) Retinoic acid expands the evolutionarily reduced dentition of zebrafish. FASEB journal : official publication of the Federation of American Societies for Experimental Biology. 26(12):5014-5024

Shwartz, Y., Farkas, Z., Stern, T., Aszódi, A., and Zelzer, E. (2012) Muscle contraction controls skeletal morphogenesis through regulation of chondrocyte convergent extension. Developmental Biology. 370(1):154-163

Talbot, J.C., Walker, M.B., Carney, T.J., Huycke, T.R., Yan, Y.L., Bremiller, R.A., Gai, L., Delaurier, A., Postlethwait, J.H., Hammerschmidt, M., and Kimmel, C.B. (2012) fras1 shapes endodermal pouch 1 and stabilizes zebrafish pharyngeal skeletal development. Development (Cambridge, England). 139(15):2804-2813

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Yan, Y.L., Bhattacharya, P., He, X., Ponugoti, B., Marquardt, B., Layman, J., Grunloh, M., Postlethwait, J.H., and Rubin, D. (2012) Duplicated zebrafish co-orthologs of parathyroid hormone-related peptide (PTHrP, Pthlh) play different roles in craniofacial skeletogenesis. The Journal of endocrinology. 214(3):421-435

Zheng, X., Yang, S., Han, Y., Zhao, X., Zhao, L., Tian, T., Tong, J., Xu, P., Xiong, C., and Meng, A. (2012) Loss of zygotic NUP107 protein causes missing of pharyngeal skeleton and other tissue defects with impaired nuclear pore function in zebrafish embryos. The Journal of biological chemistry. 287(45):38254-38264

Curtin, E., Hickey, G., Kamel, G., Davidson, A.J., and Liao, E.C. (2011) Zebrafish wnt9a is expressed in pharyngeal ectoderm and is required for palate and lower jaw development. Mechanisms of Development. 128(1-2):104-115

Dale, R.M., and Topczewski, J. (2011) Identification of an evolutionarily conserved regulatory element of the zebrafish col2a1a gene. Developmental Biology. 357(2):518-31

Ghassibe-Sabbagh, M., Desmyter, L., Langenberg, T., Claes, F., Boute, O., Bayet, B., Pellerin, P., Hermans, K., Backx, L., Mansilla, M.A., Imoehl, S., Nowak, S., Ludwig, K.U., Baluardo, C., Ferrian, M., Mossey, P.A., Noethen, M., Dewerchin, M., François, G., Revencu, N., Vanwijck, R., Hecht, J., Mangold, E., Murray, J., Rubini, M., Vermeesch, J.R., Poirel, H.A., Carmeliet, P., and Vikkula, M. (2011) FAF1, a Gene that Is Disrupted in Cleft Palate and Has Conserved Function in Zebrafish. American journal of human genetics. 88(2):150-161

Greenhill, E.R., Rocco, A., Vibert, L., Nikaido, M., and Kelsh, R.N. (2011) An iterative genetic and dynamical modelling approach identifies novel features of the gene regulatory network underlying melanocyte development. PLoS Genetics. 7(9):e1002265

He, X., Yan, Y.L., Delaurier, A., and Postlethwait, J.H. (2011) Observation of miRNA Gene Expression in Zebrafish Embryos by In Situ Hybridization to MicroRNA Primary Transcripts. Zebrafish. 8(1):1-8

Johnson, C.W., Hernandez-Lagunas, L., Feng, W., Melvin, V.S., Williams, T., and Artinger, K.B. (2011) Vgll2a is required for neural crest cell survival during zebrafish craniofacial development. Developmental Biology. 357(1):269-81

Laue, K., Pogoda, H.M., Daniel, P.B., van Haeringen, A., Alanay, Y., von Ameln, S., Rachwalski, M., Morgan, T., Gray, M.J., Breuning, M.H., Sawyer, G.M., Sutherland-Smith, A.J., Nikkels, P.G., Kubisch, C., Bloch, W., Wollnik, B, Hammerschmidt, M., and Robertson, S.P. (2011) Craniosynostosis and Multiple Skeletal Anomalies in Humans and Zebrafish Result from a Defect in the Localized Degradation of Retinoic Acid. American journal of human genetics. 89(5):595-606

Nakamura, Y., Yamamoto, K., He, X., Otsuki, B., Kim, Y., Murao, H., Soeda, T., Tsumaki, N., Deng, J.M., Zhang, Z., Behringer, R.R., Crombrugghe, B., Postlethwait, J.H., Warman, M.L., Nakamura, T., and Akiyama, H. (2011) Wwp2 is essential for palatogenesis mediated by the interaction between Sox9 and mediator subunit 25. Nature communications. 2:251

Rouleau, M., Saxena, V., Rodrigue, A., Paquet, E.R., Gagnon, A., Hendzel, M.J., Masson, J.Y., Ekker, M., and Poirier, G.G. (2011) A Key Role for Poly(ADP-Ribose) Polymerase 3 in Ectodermal Specification and Neural Crest Development. PLoS One. 6(1):e15834

Sousa, S., Afonso, N., Bensimon-Brito, A., Fonseca, M., Simões, M., Leon, J., Roehl, H., Cancela, M.L., and Jacinto, A. (2011) Differentiated skeletal cells contribute to blastema formation during zebrafish fin regeneration. Development (Cambridge, England). 138(18):3897-3905

Swartz, M.E., Sheehan-Rooney, K., Dixon, M.J., and Eberhart, J.K. (2011) Examination of a palatogenic gene program in zebrafish. Developmental Dynamics : an official publication of the American Association of Anatomists. 240(9):2204-2220

van Boxtel, A.L., Gansner, J.M., Hakvoort, H.W., Snell, H., Legler, J., and Gitlin, J.D. (2011) Lysyl oxidase-like 3b is Critical for Cartilage Maturation During Zebrafish Craniofacial Development. Matrix biology : journal of the International Society for Matrix Biology. 30(3):178-87

Cheah, F.S., Winkler, C., Jabs, E.W., and Chong, S.S. (2010) tgfbeta3 Regulation of Chondrogenesis and Osteogenesis in Zebrafish is Mediated Through Formation and Survival of a Subpopulation of the Cranial Neural Crest. Mechanisms of Development. 128(7-8):329-344

Chuang, H.N., Cheng, H.Y., Hsiao, K.M., Lin, C.W., Lin, M.L., and Pan, H. (2010) The zebrafish homeobox gene irxl1 is required for brain and pharyngeal arch morphogenesis. Developmental Dynamics : an official publication of the American Association of Anatomists. 239(2):639-650

Eames, B.F., Singer, A., Smith, G.A., Wood, Z.A., Yan, Y.L., He, X., Polizzi, S.J., Catchen, J.M., Rodriguez-Mari, A., Linbo, T., Raible, D.W., and Postlethwait, J.H. (2010) UDP xylose synthase 1 is required for morphogenesis and histogenesis of the craniofacial skeleton. Developmental Biology. 341(2):400-415

Esain, V., Postlethwait, J.H., Charnay, P., and Ghislain, J. (2010) FGF-receptor signalling controls neural cell diversity in the zebrafish hindbrain by regulating olig2 and sox9. Development (Cambridge, England). 137(1):33-42

Gill, J.A., Lowe, L., Nguyen, J., Liu, P.P., Blake, T., Venkatesh, B., and Aplan, P.D. (2010) Enforced expression of simian virus 40 large T-antigen leads to testicular germ cell tumors in zebrafish. Zebrafish. 7(4):333-341

Li, N., Kelsh, R.N., Croucher, P., and Roehl, H.H. (2010) Regulation of neural crest cell fate by the retinoic acid and Pparg signalling pathways. Development (Cambridge, England). 137(3):389-394

Li, Y., Laue, K., Temtamy, S., Aglan, M., Kotan, L.D., Yigit, G., Canan, H., Pawlik, B., Nürnberg, G., Wakeling, E.L., Quarrell, O.W., Baessmann, I., Lanktree, M.B., Yilmaz, M., Hegele, R.A., Amr, K., May, K.W., Nürnberg, P., Topaloglu, A.K., Hammerschmidt, M., and Wollnik, B. (2010) Temtamy Preaxial Brachydactyly Syndrome Is Caused by Loss-of-Function Mutations in Chondroitin Synthase 1, a Potential Target of BMP Signaling. American journal of human genetics. 87(6):757-767

Reed, N.P., and Mortlock, D.P. (2010) Identification of a distant cis-regulatory element controlling pharyngeal arch-specific expression of zebrafish gdf6a/radar. Developmental Dynamics : an official publication of the American Association of Anatomists. 239(4):1047-1060

Sarmah, S., Barrallo-Gimeno, A., Melville, D.B., Topczewski, J., Solnica-Krezel, L., and Knapik, E.W. (2010) Sec24D-dependent transport of extracellular matrix proteins is required for zebrafish skeletal morphogenesis. PLoS One. 5(4):e10367

Schwend, T., Loucks, E.J., and Ahlgren, S.C. (2010) Visualization of gli activity in craniofacial tissues of hedgehog-pathway reporter transgenic zebrafish. PLoS One. 5(12):e14396

Talbot, J.C., Johnson, S.L., and Kimmel, C.B. (2010) hand2 and Dlx genes specify dorsal, intermediate and ventral domains within zebrafish pharyngeal arches. Development (Cambridge, England). 137(15):2507-2517

Tong, S.K., Hsu, H.J., and Chung, B.C. (2010) Zebrafish monosex population reveals female dominance in sex determination and earliest events of gonad differentiation. Developmental Biology. 344(2):849-856

van Boxtel, A.L., Pieterse, B., Cenijn, P., Kamstra, J.H., Brouwer, A., van Wieringen, W., de Boer, J., and Legler, J. (2010) Dithiocarbamates Induce Craniofacial Abnormalities and Downregulate sox9a during Zebrafish Development. Toxicological sciences : an official journal of the Society of Toxicology. 117(1):209-217

Arduini, B.L., Bosse, K.M., and Henion, P.D. (2009) Genetic ablation of neural crest cell diversification. Development (Cambridge, England). 136(12):1987-1994

Baas, D., Malbouyres, M., Haftek-Terreau, Z., Le Guellec, D., and Ruggiero, F. (2009) Craniofacial cartilage morphogenesis requires zebrafish col11a1 activity. Matrix biology : journal of the International Society for Matrix Biology. 28(8):490-502

Birkholz, D.A., Killian, E.C., George, K.M., and Artinger, K.B. (2009) Prdm1a is necessary for posterior pharyngeal arch development in zebrafish. Developmental Dynamics : an official publication of the American Association of Anatomists. 238(10):2575-2587

Braasch, I., Brunet, F., Volff, J.N., and Schartl, M. (2009) Pigmentation pathway evolution after whole-genome duplication in fish. Genome biology and evolution. 1:479-493

Chen, Y.H., Lin, Y.T., and Lee, G.H. (2009) Novel and unexpected functions of zebrafish CCAAT box binding transcription factor (NF-Y) B subunit during cartilages development. Bone. 44(5):777-784

Dutton, K., Abbas, L., Spencer, J., Brannon, C., Mowbray, C., Nikaido, M., Kelsh, R.N., and Whitfield, T.T. (2009) A zebrafish model for Waardenburg syndrome type IV reveals diverse roles for Sox10 in the otic vesicle. Disease models & mechanisms. 2(1-2):68-83

Flanagan-Steet, H., Sias, C., and Steet, R. (2009) Altered Chondrocyte Differentiation and Extracellular Matrix Homeostasis in a Zebrafish Model for Mucolipidosis II. The American journal of pathology. 175(5):2063-2075

Koskinen, J., Karlsson, J., and Olsson, P.E. (2009) Sox9a regulation of ff1a in zebrafish (Danio rerio) suggests an involvement of ff1a in cartilage development. Comparative biochemistry and physiology. Part A, Molecular & integrative physiology. 153(1):39-43

Nakada, C., Iida, A., Tabata, Y., and Watanabe, S. (2009) Forkhead transcription factor foxe1 regulates chondrogenesis in zebrafish. Journal of experimental zoology. Part B, Molecular and developmental evolution. 312(8):827-840

Schwend, T., and Ahlgren, S.C. (2009) Zebrafish con/disp1 reveals multiple spatiotemporal requirements for Hedgehog-signaling in craniofacial development. BMC Developmental Biology. 9:59

Webb, K.J., Norton, W.H.J., Trumbach, D., Meijer, A.H., Ninkovic, J., Topp, S., Heck, D., Marr, C., Wurst, W., Theis, F.J., Spaink, H.P., and Bally-Cuif, L. (2009) Zebrafish reward mutants reveal novel transcripts mediating the behavioral effects of amphetamine. Genome biology. 10(7):R81

Yokoi, H., Yan, Y.L., Miller, M.R., Bremiller, R.A., Catchen, J.M., Johnson, E.A., and Postlethwait, J.H. (2009) Expression profiling of zebrafish sox9 mutants reveals that Sox9 is required for retinal differentiation. Developmental Biology. 329(1):1-15

Clément, A., Wiweger, M., von der Hardt, S., Rusch, M.A., Selleck, S.B., Chien, C.B., and Roehl, H.H. (2008) Regulation of zebrafish skeletogenesis by ext2/dackel and papst1/pinscher. PLoS Genetics. 4(7):e1000136

Jorgensen, A., Morthorst, J.E., Andersen, O., Juul Rasmussen, L., and Bjerregaard, P. (2008) Expression profiles for six zebrafish genes during gonadal sex differentiation. Reproductive Biology and Endocrinolgy. 6:25

Laue, K., Daujat, S., Crump, J.G., Plaster, N., Roehl, H.H., Tübingen 2000 Screen Consortium, Kimmel, C.B., Schneider, R., and Hammerschmidt, M. (2008) The multidomain protein Brpf1 binds histones and is required for Hox gene expression and segmental identity. Development (Cambridge, England). 135(11):1935-1946

Laue, K., Jänicke, M., Plaster, N., Sonntag, C., and Hammerschmidt, M. (2008) Restriction of retinoic acid activity by Cyp26b1 is required for proper timing and patterning of osteogenesis during zebrafish development. Development (Cambridge, England). 135(22):3775-3787

Rastegar, S., Hess, I., Dickmeis, T., Nicod, J.C., Ertzer, R., Hadzhiev, Y., Thies, W.G., Scherer, G., and Strähle, U. (2008) The words of the regulatory code are arranged in a variable manner in highly conserved enhancers. Developmental Biology. 318(2):366-377

Rotllant, J., Liu, D., Yan, Y.L., Postlethwait, J.H., Westerfield, M., and Du, S.J. (2008) Sparc (Osteonectin) functions in morphogenesis of the pharyngeal skeleton and inner ear. Matrix biology : journal of the International Society for Matrix Biology. 27(6):561-572

Siegfried, K.R., and Nüsslein-Volhard, C. (2008) Germ line control of female sex determination in zebrafish. Developmental Biology. 324(2):277-287

Sperber, S.M., and Dawid, I.B. (2008) barx1 is necessary for ectomesenchyme proliferation and osteochondroprogenitor condensation in the zebrafish pharyngeal arches. Developmental Biology. 321(1):101-110

Sperber, S.M., Saxena, V., Hatch, G., and Ekker, M. (2008) Zebrafish dlx2a contributes to hindbrain neural crest survival, is necessary for differentiation of sensory ganglia and functions with dlx1a in maturation of the arch cartilage elements. Developmental Biology. 314(1):59-70

Crotwell, P.L., and Mabee, P.M. (2007) Gene expression patterns underlying proximal-distal skeletal segmentation in late-stage zebrafish, Danio rerio. Developmental Dynamics : an official publication of the American Association of Anatomists. 236(11):3111-3128

Hans, S., Christison, J., Liu, D., and Westerfield, M. (2007) Fgf-dependent otic induction requires competence provided by Foxi1 and Dlx3b. BMC Developmental Biology. 7(1):5

Khut, P.Y., Tucker, B., Lardelli, M., and Wood, S.A. (2007) Evolutionary and Expression Analysis of the Zebrafish Deubiquitylating Enzyme, Usp9. Zebrafish. 4(2):95-101

Nair, S., Li, W., Cornell, R., and Schilling, T.F. (2007) Requirements for Endothelin type-A receptors and Endothelin-1 signaling in the facial ectoderm for the patterning of skeletogenic neural crest cells in zebrafish. Development (Cambridge, England). 134(2):335-345

Walker, M.B., Miller, C.T., Swartz, M.E., Eberhart, J.K., and Kimmel, C.B. (2007) phospholipase C, beta 3 is required for Endothelin1 regulation of pharyngeal arch patterning in zebrafish. Developmental Biology. 304(1):194-207

Adolf, B., Chapouton, P., Lam, C.S., Topp, S., Tannhauser, B., Strähle, U., Gotz, M., and Bally-Cuif, L. (2006) Conserved and acquired features of adult neurogenesis in the zebrafish telencephalon. Developmental Biology. 295(1):278-293

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Additional Citations (26):

ZFIN Staff (2024) Association of Ensembl transcripts with ZFIN genes. Semi-automated Curation.

ZFIN Staff (2023) Automated Curation of UniProt Database Links. Automated Data Submission.

ZFIN Staff (2022) Electronic Gene Ontology annotations created by ARBA machine learning models. Automated Data Submission.

ZFIN Staff (2020) Addition of links from ZFIN to Expression Atlas. Semi-automated Curation.

ZFIN Staff (2019) Analysis of data directly submitted to the Zebrafish International Resource Center (ZIRC). ZFIN Direct Data Submission.

ZFIN Staff (2017) Curation of PANTHER Gene IDs. Automated Data Submission.

ZFIN Staff (2017) Curation of Alliance of Genome Resources Database Links. Automated Data Submission.

UniProt curators (2015) Electronic Gene Ontology annotations created by transferring manual GO annotations between related proteins based on shared sequence features.. Automated Data Submission.

ZFIN Staff (2015) Data Model Change: Sequence Targeting Reagents Removed from Environment. ZFIN Historical Data.

Geisler, R. (2013) Importation of Tübingen internal allele names. ZFIN Direct Data Submission.

ZFIN Staff (2013) Semi-automated association of ENSDARG identifiers with ZFIN genes for the ZMP project. Semi-automated Curation.

UniProt-GOA (2011) Gene Ontology annotation based on the automatic assignment of UniProtKB Subcellular Location terms in UniProtKB/TrEMBL entries. Manually curated data.

Zebrafish Nomenclature Committee (2011) Nomenclature Requests: Mutant and Transgenic Name Reservations (2011). Nomenclature Committee Submission.

Gaudet, P., Livstone, M., Thomas, P., The Reference Genome Project (2010) Annotation inferences using phylogenetic trees. Automated Data Submission.

ZFIN Staff (2007) Microarray Expression to Gene Association in ZFIN. Semi-automated Curation.

ZIRC and ZFIN Staff (2007) Mutant and Transgenic Line Submissions. ZFIN Direct Data Submission.

Ensembl curators, GOA curators (2006) Automatic transfer of experimentally verified manual GO annotation data to orthologs using Ensembl Compara. Manually curated data.

Phenotype Annotation (1994-2006) (2006) Mutant Data Curated from Older Literature. ZFIN Historical Data.

ZFIN Staff (2006) Curation of Ensembl Database Links. Automated Data Submission.

Zebrafish Nomenclature Committee (2003) Nomenclature Data Curation (2003-2010). Nomenclature Committee Submission.

ZFIN Staff (2003) Submission and Curation of Mutant and Transgenic Lines. ZFIN Direct Data Submission.

ZFIN Staff (2003) Curation of VEGA Database Links. Automated Data Submission.

ZFIN Staff (2003) Computational Sequence to Gene Association in ZFIN. Semi-automated Curation.

ZFIN Staff (2002) Gene Ontology Annotation Through Association of UniProt Keywords with GO Terms. Automated Data Submission.

ZFIN Staff (2002) Curation of NCBI Gene Data Via Shared RNA Sequence IDs. Automated Data Submission.

ZFIN Staff (2002) Scientific Curation. Manually curated data.