ZFIN ID: ZDB-FIG-080218-5
Wingert et al., 2007 - The cdx Genes and Retinoic Acid Control the Positioning and Segmentation of the Zebrafish Pronephros. PLoS Genetics   3(10):1922-1938 Full text @ PLoS Genet.
ADDITIONAL FIGURES
EXPRESSION / LABELING:
Genes:
Fish:
Anatomical Terms:
Stage Range: Prim-5 to Long-pec

Fig. 2 Pronephros Expression of Known Renal Genes and Solute Transporters Isolated Using Functional Genomic. The domain of each pronephros-expressed gene was mapped along the embryonic axis according to somite boundaries, using double in situ hybridization with mhc to label the myotomes. Solid color bars indicate strong expression, light color bars indicate weak expression, and blue/black stripe bars indicate overlap in the expression domains of DL and PD markers; note that rfx2 expression at 48 hpf is discontinuous in the PST and DE domains. Schematic anatomy of the pronephros at 24 hpf (top, left) compared to 48 hpf (top, right). The cloaca (C) is not considered a segment of the pronephros, but is shown to depict the terminus of the pronephros.

Gene Expression Details
Gene Antibody Fish Conditions Stage Qualifier Anatomy Assay
aqp3a TU standard conditions Prim-5 cloacal chamber ISH
Long-pec cloacal chamber ISH
cdh17 TU standard conditions Prim-5 posterior pronephric duct ISH
Prim-5 pronephric distal early tubule ISH
Prim-5 pronephric distal late tubule ISH
Prim-5 pronephric proximal convoluted tubule ISH
Prim-5 pronephric proximal straight tubule ISH
Prim-5 pronephric tubule ISH
Long-pec posterior pronephric duct ISH
Long-pec pronephric distal early tubule ISH
Long-pec pronephric distal late tubule ISH
Long-pec pronephric proximal convoluted tubule ISH
Long-pec pronephric proximal straight tubule ISH
Long-pec pronephric tubule ISH
gata3 TU standard conditions Prim-5 corpuscles of Stannius ISH
Prim-5 posterior pronephric duct ISH
Prim-5 pronephric distal late tubule ISH
Long-pec cloacal chamber ISH
Long-pec corpuscles of Stannius ISH
Long-pec posterior pronephric duct ISH
Long-pec pronephric distal late tubule ISH
kcnj1a.1 TU standard conditions Prim-5 pronephric distal early tubule ISH
Long-pec pronephric distal early tubule ISH
Long-pec pronephric distal late tubule ISH
mafba TU standard conditions Prim-5 podocyte ISH
Long-pec podocyte ISH
Long-pec pronephric proximal convoluted tubule ISH
mecom TU standard conditions Prim-5 cloacal chamber ISH
Prim-5 posterior pronephric duct ISH
Prim-5 pronephric distal late tubule ISH
Long-pec cloacal chamber ISH
Long-pec posterior pronephric duct ISH
Long-pec pronephric distal late tubule ISH
pax2a TU standard conditions Prim-5 posterior pronephric duct ISH
Prim-5 pronephric distal early tubule ISH
Prim-5 pronephric distal late tubule ISH
Prim-5 pronephric proximal straight tubule ISH
Prim-5 pronephric tubule ISH
Long-pec posterior pronephric duct ISH
Long-pec pronephric distal early tubule ISH
Long-pec pronephric distal late tubule ISH
Long-pec pronephric proximal convoluted tubule ISH
Long-pec pronephric proximal straight tubule ISH
Long-pec pronephric tubule ISH
pdzk1 TU standard conditions Prim-5 pronephric proximal convoluted tubule ISH
Prim-5 pronephric proximal straight tubule ISH
Long-pec pronephric proximal convoluted tubule ISH
Long-pec pronephric proximal straight tubule ISH
ret TU standard conditions Prim-5 posterior pronephric duct ISH
Prim-5 pronephric distal late tubule ISH
Long-pec posterior pronephric duct ISH
Long-pec pronephric distal late tubule ISH
rfx2 TU standard conditions Prim-5 Not Detected pronephros ISH
Long-pec pronephric distal early tubule ISH
Long-pec pronephric proximal straight tubule ISH
Long-pec pronephric tubule ISH
sall1a TU standard conditions Prim-5 corpuscles of Stannius ISH
Long-pec Not Detected pronephros ISH
slc4a2a TU standard conditions Prim-5 posterior pronephric duct ISH
Prim-5 pronephric distal early tubule ISH
Prim-5 pronephric distal late tubule ISH
Prim-5 pronephric proximal convoluted tubule ISH
Prim-5 pronephric proximal straight tubule ISH
Long-pec posterior pronephric duct ISH
Long-pec pronephric distal early tubule ISH
Long-pec pronephric distal late tubule ISH
Long-pec pronephric proximal convoluted tubule ISH
Long-pec pronephric proximal straight tubule ISH
slc4a4a TU standard conditions Prim-5 pronephric proximal convoluted tubule ISH
Prim-5 pronephric proximal straight tubule ISH
Prim-5 pronephric tubule ISH
Long-pec pronephric proximal convoluted tubule ISH
Long-pec pronephric proximal straight tubule ISH
slc5a1 TU standard conditions Prim-5 pronephric proximal convoluted tubule ISH
Prim-5 pronephric proximal straight tubule ISH
Long-pec pronephric proximal convoluted tubule ISH
Long-pec pronephric proximal straight tubule ISH
slc9a3r1a TU standard conditions Prim-5 podocyte ISH
Prim-5 pronephric proximal convoluted tubule ISH
Prim-5 pronephric proximal straight tubule ISH
Prim-5 pronephric tubule ISH
Long-pec podocyte ISH
Long-pec pronephric proximal convoluted tubule ISH
Long-pec pronephric proximal straight tubule ISH
Long-pec pronephric tubule ISH
slc12a1 TU standard conditions Prim-5 pronephric distal early tubule ISH
Long-pec pronephric distal early tubule ISH
slc12a3 TU standard conditions Prim-5 pronephric distal late tubule ISH
Long-pec pronephric distal late tubule ISH
slc13a1 TU standard conditions Prim-5 Not Detected pronephros ISH
Long-pec pronephric proximal straight tubule ISH
slc20a1a TU standard conditions Prim-5 pronephric proximal convoluted tubule ISH
Long-pec pronephric proximal convoluted tubule ISH
slc26a2 TU standard conditions Prim-5 pronephric proximal convoluted tubule ISH
Prim-5 pronephric proximal straight tubule ISH
Long-pec pronephric proximal convoluted tubule ISH
Long-pec pronephric proximal straight tubule ISH
slc41a1 TU standard conditions Prim-5 Not Detected pronephros ISH
Long-pec corpuscles of Stannius ISH
stc1l TU standard conditions Prim-5 corpuscles of Stannius ISH
Long-pec corpuscles of Stannius ISH
trpm7 TU standard conditions Prim-5 pronephric proximal straight tubule ISH
Long-pec corpuscles of Stannius ISH
Long-pec pronephric proximal straight tubule ISH
wt1a TU standard conditions Prim-5 podocyte ISH
Long-pec podocyte ISH
wt1b TU standard conditions Prim-5 podocyte ISH
Long-pec podocyte ISH
Antibody Labeling Details No data available
Phenotype Details No data available
Acknowledgments:
ZFIN wishes to thank the journal PLoS Genetics for permission to reproduce figures from this article. Please note that this material may be protected by copyright. Full text @ PLoS Genet.