ZFIN ID: ZDB-GENE-030910-3
Gene Name: cadherin 17, LI cadherin (liver-intestine)
Gene Symbol: cdh17    Nomenclature History

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Previous Names: cb903 (1), fb65d02, wu:fb65d02 (1)

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 16 Mapping Details/Browsers
Description: Predicted to have cadherin binding activity; calcium ion binding activity; and cytoskeletal protein binding activity. Involved in pronephros development. Predicted to localize to adherens junction; catenin complex; and cell surface. Is expressed in intermediate cell mass of mesoderm; intermediate mesoderm; and renal system. Orthologous to human CDH17 (cadherin 17).
Genome Resources: Alliance (1),  Gene:378452 (1),  Ensembl(GRCz11):ENSDARG00000005112 (2)
PHENOTYPE No data available
DISEASE ASSOCIATED WITH cdh17 HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH cdh17 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process pronephros development (more)
Cellular Component integral component of membrane (more)
Molecular Function calcium ion binding (more)
GO Terms (all 19)
PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
TRANSCRIPTS
Type Name Length (nt) Analysis
mRNA cdh17-201 (1)    Ensembl 3326
ncRNA cdh17-002 (1)    Ensembl 634
Browsers: UCSCNCBIEnsemblZFIN
INTERACTIONS AND PATHWAYS
ANTIBODIES
Name Type Isotype Host Organism Assay Source Publications
Ab1-cdh17 polyclonal Rabbit IHC 4
Ab2-cdh17 Rabbit IHC 2
PLASMIDS No data available
CONSTRUCTS WITH SEQUENCES FROM cdh17
Construct Regulatory Regions Coding Sequences Species Tg Lines Publications
Tg(-1.2cdh17:EGFP) cdh17 EGFP Danio rerio 1 4
Tg(-2.5cdh17:mCherry) cdh17 mCherry Danio rerio 1 3
Tg(cdh17:Cre-ERT2) cdh17 CreERT2 Danio rerio 1 1
Tg(cdh17:EGFP) cdh17 EGFP Danio rerio 1 3
tg(cdh17:gfp) cdh17 GFP Danio rerio 1 2
Tg(cdh17:havcr2-RFP) cdh17 havcr2RFP Danio rerio 1 1
Tg(cdh17:Hsa.AKT1-EGFP) cdh17 EGFP Danio rerioHomo sapiens 1 2
Tg(cdh17:Hsa.PLCD1-EGFP) cdh17 EGFP Danio rerioHomo sapiens 1 2
Tg(cdh17:Hsa.PLCD1-mCherry) cdh17 mCherry Danio rerioHomo sapiens 1 2
Tg(cdh17:mCherry) cdh17 EGFPmCherry Danio rerio 1 5
Tg(cdh17:RFP) cdh17 RFP Danio rerio 1 1
tg(cdh17:yap1-egfp) cdh17 EGFPyap1 Danio rerio 1 1
tg(cdh17:yap1_s87a-egfp) cdh17 EGFPyap1 Danio rerio 1 1
tg(cdh17:yap1_s87d-egfp) cdh17 EGFPyap1 Danio rerio 1 1
Tg2(-1.2cdh17:EGFP) cdh17 EGFP Danio rerio 1 2
Tg2(cdh17:EGFP) cdh17 EGFP Danio rerio 3 4
Tg2(cdh17:mCherry) cdh17 mCherry Danio rerio 1 2
Tg3(cdh17:EGFP) cdh17 EGFP Danio rerio 1 9
Tg4(cdh17:EGFP) cdh17 EGFP Danio rerio 1 4
Tg5(cdh17:EGFP) cdh17 EGFP Danio rerio 1 3
Tg6(cdh17:EGFP) cdh17 EGFP Danio rerio 1 6
Tg7(cdh17:EGFP) cdh17 EGFP Danio rerio 1 2
tg8(cdh17:egfp) cdh17 EGFP Danio rerio 1 1
MARKER RELATIONSHIPS
cdh17 Contained in: [BAC] CH211-79L20 (1)
cdh17 Encodes: [EST] cb903 (1) (order this), fb65d02 (1)
[cDNA] MGC:55248 (1), MGC:77579 (1)
SEQUENCE INFORMATION
Type Accession # Length (nt/aa) Analysis
RNA RefSeq:NM_194422 (1) 3373 nt
Genomic GenBank:BX511010 156317 nt
Select Tool
Polypeptide UniProtKB:F1RD80 (1) 868 aa
Sequence Information (all 20)
ORTHOLOGY for cdh17 ( Chr: 16 )
CITATIONS (93)