ZFIN ID: ZDB-LAB-970505-58
Schier Lab
PI/Director: Schier, Alexander
Contact Person: Schier, Alexander
Email: schier@fas.harvard.edu
URL: http://labs.mcb.harvard.edu/schier/
Address: Harvard University Department of Molecular and Cellular Biology 16 Divinity Avenue Cambridge MA 02138 USA
Country: United States
Phone: 617.496.4845
Fax: 617.495.9300
Line Designation: a

Show first 50 of 240 genomic features

Sensory development and function
Sleep and wakefulness

Dubrulle, Julien Post-Doc Kraves, Sebastian Post-Doc Navajas Acedo, Joaquin Post-Doc
Baptista, Ines Graduate Student Caron, Sophie Graduate Student Choi, Wen-Yee Graduate Student
Choy, Margaret Graduate Student Lee, Joon Graduate Student Zimmerman, Steve Research Staff

Shafer, M.E.R., Sawh, A.N., Schier, A.F. (2021) Gene family evolution underlies cell-type diversification in the hypothalamus of teleosts. Nature ecology & evolution. 6(1):63-76
Lord, N.D., Carte, A.N., Abitua, P.B., Schier, A.F. (2021) The pattern of Nodal morphogen signaling is shaped by co-receptor expression. eLIFE. 10:
Raj, B., Farrell, J.A., Liu, J., El Kholtei, J., Carte, A.N., Navajas Acedo, J., Du, L.Y., McKenna, A., Relić, Đ., Leslie, J.M., Schier, A.F. (2020) Emergence of Neuronal Diversity during Vertebrate Brain Development. Neuron. 108(6):1058-1074.e6
Isabella, A.J., Barsh, G.R., Stonick, J.A., Dubrulle, J., Moens, C.B. (2020) Retinoic Acid Organizes the Zebrafish Vagus Motor Topographic Map via Spatiotemporal Coordination of Hgf/Met Signaling. Developmental Cell. 53(3):344-357.e5
Lin, Q., Manley, J., Helmreich, M., Schlumm, F., Li, J.M., Robson, D.N., Engert, F., Schier, A., Nöbauer, T., Vaziri, A. (2020) Cerebellar Neurodynamics Predict Decision Timing and Outcome on the Single-Trial Level. Cell. 180(3):536-551.e17
Ma 马漫修, M., Ramirez, A.D., Wang 王彤, T., Roberts, R.L., Harmon, K.E., Schoppik, D., Sharma, A., Kuang, C., Goei, S.L., Gagnon, J.A., Zimmerman, S., Tsai, S.Q., Reyon, D., Joung, J.K., Aksay, E.R.F., Schier, A.F., Pan 潘於勤, Y.A. (2019) Zebrafish dscaml1 Deficiency Impairs Retinal Patterning and Oculomotor Function. The Journal of neuroscience : the official journal of the Society for Neuroscience. 40(1):143-158
Navajas Acedo, J., Voas, M.G., Alexander, R., Woolley, T., Unruh, J.R., Li, H., Moens, C., Piotrowski, T. (2019) PCP and Wnt pathway components act in parallel during zebrafish mechanosensory hair cell orientation. Nature communications. 10:3993
Wee, C.L., Nikitchenko, M., Wang, W.C., Luks-Morgan, S.J., Song, E., Gagnon, J.A., Randlett, O., Bianco, I.H., Lacoste, A.M.B., Glushenkova, E., Barrios, J.P., Schier, A.F., Kunes, S., Engert, F., Douglass, A.D. (2019) Zebrafish oxytocin neurons drive nocifensive behavior via brainstem premotor targets. Nature Neuroscience. 22(9):1477-1492
Haesemeyer, M., Schier, A.F., Engert, F. (2019) Convergent Temperature Representations in Artificial and Biological Neural Networks. Neuron. 103(6):1123-1134.e6
Postlethwait, J.H., Navajas Acedo, J., Piotrowski, T. (2019) Evolutionary Origin and Nomenclature of Vertebrate Wnt11-Family Genes. Zebrafish. 16(5):469-476
Randlett, O., Haesemeyer, M., Forkin, G., Shoenhard, H., Schier, A.F., Engert, F., Granato, M. (2019) Distributed Plasticity Drives Visual Habituation Learning in Larval Zebrafish. Current biology : CB. 29(8):1337-1345.e4
Thyme, S.B., Pieper, L.M., Li, E.H., Pandey, S., Wang, Y., Morris, N.S., Sha, C., Choi, J.W., Herrera, K.J., Soucy, E.R., Zimmerman, S., Randlett, O., Greenwood, J., McCarroll, S.A., Schier, A.F. (2019) Phenotypic Landscape of Schizophrenia-Associated Genes Defines Candidates and Their Shared Functions. Cell. 177(2):478-491.e20
Han, Y., Chen, A., Umansky, K.B., Oonk, K.A., Choi, W.Y., Dickson, A.L., Ou, J., Cigliola, V., Yifa, O., Cao, J., Tornini, V.A., Cox, B.D., Tzahor, E., Poss, K.D. (2019) Vitamin D Stimulates Cardiomyocyte Proliferation and Controls Organ Size and Regeneration in Zebrafish. Developmental Cell. 48(6):853-863.e5
Goudarzi, M., Berg, K., Pieper, L.M., Schier, A.F. (2019) Individual long non-coding RNAs have no overt functions in zebrafish embryogenesis, viability and fertility. eLIFE. 8:
Montague, T.G., Gagnon, J.A., Schier, A.F. (2018) Conserved regulation of Nodal-mediated left-right patterning in zebrafish and mouse. Development (Cambridge, England). 145(24):
Raj, B., Gagnon, J.A., Schier, A.F. (2018) Large-scale reconstruction of cell lineages using single-cell readout of transcriptomes and CRISPR-Cas9 barcodes by scGESTALT. Nature Protocols. 13(11):2685-2713
Karra, R., Foglia, M.J., Choi, W.Y., Belliveau, C., DeBenedittis, P., Poss, K.D. (2018) Vegfaa instructs cardiac muscle hyperplasia in adult zebrafish. Proceedings of the National Academy of Sciences of the United States of America. 115(35):8805-8810
Almuedo-Castillo, M., Bläßle, A., Mörsdorf, D., Marcon, L., Soh, G.H., Rogers, K.W., Schier, A.F., Müller, P. (2018) Scale-invariant patterning by size-dependent inhibition of Nodal signalling. Nature cell biology. 20(9):1032-1042
Haesemeyer, M., Robson, D.N., Li, J.M., Schier, A.F., Engert, F. (2018) A Brain-wide Circuit Model of Heat-Evoked Swimming Behavior in Larval Zebrafish. Neuron. 98(4):817-831.e6
Farrell, J.A., Wang, Y., Riesenfeld, S.J., Shekhar, K., Regev, A., Schier, A.F. (2018) Single-cell reconstruction of developmental trajectories during zebrafish embryogenesis. Science (New York, N.Y.). 360(6392)
Raj, B., Wagner, D.E., McKenna, A., Pandey, S., Klein, A.M., Shendure, J., Gagnon, J.A., Schier, A.F. (2018) Simultaneous single-cell profiling of lineages and cell types in the vertebrate brain. Nature Biotechnology. 36(5):442-450
Pandey, S., Shekhar, K., Regev, A., Schier, A.F. (2018) Comprehensive Identification and Spatial Mapping of Habenular Neuronal Types Using Single-Cell RNA-Seq. Current biology : CB. 28(7):1052-1065.e7
Dubrulle, J. (2018) Correction to: Morphogen Gradients. Methods in molecular biology (Clifton, N.J.). 1863:E1
Rogers, K.W., Lord, N.D., Gagnon, J.A., Pauli, A., Zimmerman, S., Aksel, D.C., Reyon, D., Tsai, S.Q., Joung, J.K., Schier, A.F. (2017) Nodal patterning without Lefty inhibitory feedback is functional but fragile. eLIFE. 6
Rabani, M., Pieper, L., Chew, G.L., Schier, A.F. (2017) A Massively Parallel Reporter Assay of 3' UTR Sequences Identifies In Vivo Rules for mRNA Degradation. Molecular Cell. 68(6):1083-1094.e5
Gagnon, J.A., Obbad, K., Schier, A.F. (2017) The primary role of zebrafish nanog is in extra-embryonic tissue.. Development (Cambridge, England). 145(1)
Boguraev, A.S., Christensen, H.C., Bonneau, A.R., Pezza, J.A., Nichols, N.M., Giraldez, A.J., Gray, M.M., Wagner, B.M., Aken, J.T., Foley, K.D., Copeland, D.S., Kraves, S., Alvarez Saavedra, E. (2017) Successful amplification of DNA aboard the International Space Station. NPJ microgravity. 3:26
Montague, T.G., Schier, A.F. (2017) Vg1-Nodal heterodimers are the endogenous inducers of mesendoderm. eLIFE. 6
Nikaido, M., Acedo, J.N., Hatta, K., Piotrowski, T. (2017) Retinoic acid is required and Fgf, Wnt, and Bmp signaling inhibit posterior lateral line placode induction in zebrafish. Developmental Biology. 431(2):215-225
Escamilla, C.O., Filonova, I., Walker, A.K., Xuan, Z.X., Holehonnur, R., Espinosa, F., Liu, S., Thyme, S.B., López-García, I.A., Mendoza, D.B., Usui, N., Ellegood, J., Eisch, A.J., Konopka, G., Lerch, J.P., Schier, A.F., Speed, H.E., Powell, C.M. (2017) Kctd13 deletion reduces synaptic transmission via increased RhoA. Nature. 551(7679):227-231
Norris, M.L., Pauli, A., Gagnon, J.A., Lord, N.D., Rogers, K.W., Mosimann, C., Zon, L.I., Schier, A.F. (2017) Toddler signaling regulates mesodermal cell migration downstream of Nodal signaling. eLIFE. 6
Schoppik, D., Bianco, I.H., Prober, D.A., Douglass, A.D., Robson, D.N., Li, J.M.B., Greenwood, J.S.F., Soucy, E., Engert, F., Schier, A.F. (2017) Gaze-stabilizing central vestibular neurons project asymmetrically to extraocular motoneuron pools. The Journal of neuroscience : the official journal of the Society for Neuroscience. 37(47):11353-11365
Freyer, L., Hsu, C.W., Nowotschin, S., Pauli, A., Ishida, J., Kuba, K., Fukamizu, A., Schier, A.F., Hoodless, P.A., Dickinson, M.E., Hadjantonakis, A.K. (2017) Loss of Apela Peptide in Mice Causes Low Penetrance Embryonic Lethality and Defects in Early Mesodermal Derivatives. Cell Reports. 20:2116-2130
Hildebrand, D.G.C., Cicconet, M., Torres, R.M., Choi, W., Quan, T.M., Moon, J., Wetzel, A.W., Scott Champion, A., Graham, B.J., Randlett, O., Plummer, G.S., Portugues, R., Bianco, I.H., Saalfeld, S., Baden, A.D., Lillaney, K., Burns, R., Vogelstein, J.T., Schier, A.F., Lee, W.A., Jeong, W.K., Lichtman, J.W., Engert, F. (2017) Whole-brain serial-section electron microscopy in larval zebrafish. Nature. 545(7654):345-349
McKenna, A., Findlay, G.M., Gagnon, J.A., Horwitz, M.S., Schier, A.F., Shendure, J. (2016) Whole organism lineage tracing by combinatorial and cumulative genome editing. Science (New York, N.Y.). 353(6298):aaf7907
Thyme, S.B., Akhmetova, L., Montague, T.G., Valen, E., Schier, A.F. (2016) Internal guide RNA interactions interfere with Cas9-mediated cleavage. Nature communications. 7:11750
Chew, G.L., Pauli, A., Schier, A.F. (2016) Conservation of uORF repressiveness and sequence features in mouse, human and zebrafish. Nature communications. 7:11663
Thyme, S.B., Schier, A.F. (2016) Correction: Polq-Mediated End Joining Is Essential for Surviving DNA Double-Strand Breaks during Early Zebrafish Development. Cell Reports. 15:1611-1613
Thyme, S.B., Schier, A.F. (2016) Polq-Mediated End Joining Is Essential for Surviving DNA Double-Strand Breaks during Early Zebrafish Development. Cell Reports. 15(4):707-714
Dunn, T.W., Mu, Y., Narayan, S., Randlett, O., Naumann, E.A., Yang, C.T., Schier, A.F., Freeman, J., Engert, F., Ahrens, M.B. (2016) Brain-wide mapping of neural activity controlling zebrafish exploratory locomotion. eLIFE. 5:e12741
Chiu, C.N., Rihel, J., Lee, D.A., Singh, C., Mosser, E.A., Chen, S., Sapin, V., Pham, U., Engle, J., Niles, B.J., Montz, C.J., Chakravarthy, S., Zimmerman, S., Salehi-Ashtiani, K., Vidal, M., Schier, A.F., Prober, D.A. (2016) A Zebrafish Genetic Screen Identifies Neuromedin U as a Regulator of Sleep/Wake States. Neuron. 89:842-856
Venero Galanternik, M., Navajas Acedo, J., Romero-Carvajal, A., Piotrowski, T. (2016) Imaging collective cell migration and hair cell regeneration in the sensory lateral line. Methods in cell biology. 134:211-56
Haesemeyer, M., Robson, D.N., Li, J.M., Schier, A.F., Engert, F. (2015) The structure and timescales of heat perception in larval zebrafish. Cell systems. 1:338-348
Randlett, O., Wee, C.L., Naumann, E.A., Nnaemeka, O., Schoppik, D., Fitzgerald, J.E., Portugues, R., Lacoste, A.M., Riegler, C., Engert, F., Schier, A.F. (2015) Whole-brain activity mapping onto a zebrafish brain atlas. Nature Methods. 12:1039-1046
Pauli, A., Montague, T.G., Lennox, K.A., Behlke, M.A., Schier, A.F. (2015) Antisense Oligonucleotide-Mediated Transcript Knockdown in Zebrafish. PLoS One. 10:e0139504
Mahmoud, A.I., O'Meara, C.C., Gemberling, M., Zhao, L., Bryant, D.M., Zheng, R., Gannon, J.B., Cai, L., Choi, W.Y., Egnaczyk, G.F., Burns, C.E., Burns, C.G., MacRae, C.A., Poss, K.D., Lee, R.T. (2015) Nerves Regulate Cardiomyocyte Proliferation and Heart Regeneration. Developmental Cell. 34(4):387-99
Romero-Carvajal, A., Navajas Acedo, J., Jiang, L., Kozlovskaja-Gumbrienė, A., Alexander, R., Li, H., Piotrowski, T. (2015) Regeneration of Sensory Hair Cells Requires Localized Interactions between the Notch and Wnt Pathways. Developmental Cell. 34(3):267-82
Bainbridge, M.N., Davis, E.E., Choi, W.Y., Dickson, A., Martinez, H.R., Wang, M., Dinh, H., Muzny, D., Pignatelli, R., Katsanis, N., Boerwinkle, E., Gibbs, R., Jefferies, J.L. (2015) Loss of Function Mutations in NNT Are Associated with Left Ventricular Noncompaction. Circulation. Cardiovascular genetics. 8(4):544-52
Li-Villarreal, N., Forbes, M.M., Loza, A.J., Chen, J., Ma, T., Helde, K., Moens, C.B., Shin, J., Sawada, A., Hindes, A.E., Dubrulle, J., Schier, A.F., Longmore, G.D., Marlow, F.L., Solnica-Krezel, L. (2015) Dachsous1b cadherin regulates actin and microtubule cytoskeleton during early zebrafish embryogenesis. Development (Cambridge, England). 142(15):2704-18
Mundell, N.A., Beier, K.T., Pan, Y.A., Lapan, S.W., Göz Aytürk, D., Berezovskii, V.K., Wark, A.R., Drokhlyansky, E., Bielecki, J., Born, R.T., Schier, A.F., Cepko, C.L. (2015) Vesicular stomatitis virus enables gene transfer and transsynaptic tracing in a wide range of organisms. The Journal of comparative neurology. 523(11):1639-63
Lacoste, A.M., Schoppik, D., Robson, D.N., Haesemeyer, M., Portugues, R., Li, J.M., Randlett, O., Wee, C.L., Engert, F., Schier, A.F. (2015) A Convergent and Essential Interneuron Pathway for Mauthner-Cell-Mediated Escapes. Current biology : CB. 25(11):1526-34
Weaver, K.N., Watt, K.E., Hufnagel, R.B., Navajas Acedo, J., Linscott, L.L., Sund, K.L., Bender, P.L., König, R., Lourenco, C.M., Hehr, U., Hopkin, R.J., Lohmann, D.R., Trainor, P.A., Wieczorek, D., Saal, H.M. (2015) Acrofacial Dysostosis, Cincinnati Type, a Mandibulofacial Dysostosis Syndrome with Limb Anomalies, Is Caused by POLR1A Dysfunction. American journal of human genetics. 96(5):765-74
Satija, R., Farrell, J.A., Gennert, D., Schier, A.F., Regev, A. (2015) Spatial reconstruction of single-cell gene expression data. Nat. Biotechnol.. 33(5):495-502
Dubrulle, J., Jordan, B.M., Akhmetova, L., Farrell, J.A., Kim, S.H., Solnica-Krezel, L., Schier, A.F. (2015) Response to Nodal morphogen gradient is determined by the kinetics of target gene induction. eLIFE. 4
Liu, J., Merkle, F.T., Gandhi, A.V., Gagnon, J.A., Woods, I.G., Chiu, C.N., Shimogori, T., Schier, A.F., Prober, D.A. (2015) Evolutionarily conserved regulation of hypocretin neuron specification by Lhx9. Development (Cambridge, England). 142(6):1113-24
Haesemeyer, M., Schier, A.F. (2015) The study of psychiatric disease genes and drugs in zebrafish. Current opinion in neurobiology. 30C:122-130
Rogers, K.W., Bläßle, A., Schier, A.F., Müller, P. (2015) Measuring Protein Stability in Living Zebrafish Embryos Using Fluorescence Decay After Photoconversion (FDAP). Journal of visualized experiments : JoVE. (95):52266
Pauli, A., Valen, E., Schier, A.F. (2015) Identifying (non-)coding RNAs and small peptides: Challenges and opportunities. BioEssays : news and reviews in molecular, cellular and developmental biology. 37(1):103-12
Rabani, M., Raychowdhury, R., Jovanovic, M., Rooney, M., Stumpo, D.J., Pauli, A., Hacohen, N., Schier, A.F., Blackshear, P.J., Friedman, N., Amit, I., Regev, A. (2014) High-Resolution Sequencing and Modeling Identifies Distinct Dynamic RNA Regulatory Strategies. Cell. 159(7):1698-710
Gagnon, J.A., Valen, E., Thyme, S.B., Huang, P., Ahkmetova, L., Pauli, A., Montague, T.G., Zimmerman, S., Richter, C., Schier, A.F. (2014) Efficient Mutagenesis by Cas9 Protein-Mediated Oligonucleotide Insertion and Large-Scale Assessment of Single-Guide RNAs. PLoS One. 9:e98186
Woods, I.G., Schoppik, D., Shi, V.J., Zimmerman, S., Coleman, H.A., Greenwood, J., Soucy, E.R., Schier, A.F. (2014) Neuropeptidergic signaling partitions arousal behaviors in zebrafish. The Journal of neuroscience : the official journal of the Society for Neuroscience. 34:3142-60
Pauli, A., Norris, M.L., Valen, E., Chew, G.L., Gagnon, J.A., Zimmerman, S., Mitchell, A., Ma, J., Dubrulle, J., Reyon, D., Tsai, S.Q., Joung, J.K., Saghatelian, A., and Schier, A.F. (2014) Toddler: an embryonic signal that promotes cell movement via Apelin receptors. Science (New York, N.Y.). 343(6172):1248636
Zhang, Y., Vastenhouw, N.L., Feng, J., Fu, K., Wang, C., Ge, Y., Pauli, A., van Hummelen, P., Schier, A.F., and Liu, X.S. (2014) Canonical nucleosome organization at promoters forms during genome activation. Genome research. 24(2):260-6
Rihel, J., and Schier, A.F. (2013) Sites of action of sleep and wake drugs: insights from model organisms. Current opinion in neurobiology. 23(5):831-40
Chew, G.L., Pauli, A., Rinn, J.L., Regev, A., Schier, A.F., and Valen, E. (2013) Ribosome profiling reveals resemblance between long non-coding RNAs and 5' leaders of coding RNAs. Development (Cambridge, England). 140(13):2828-2834
Pan, Y.A., Freundlich, T., Weissman, T.A., Schoppik, D., Wang, X.C., Zimmerman, S., Ciruna, B., Sanes, J.R., Lichtman, J.W., and Schier, A.F. (2013) Zebrabow: multispectral cell labeling for cell tracing and lineage analysis in zebrafish. Development (Cambridge, England). 140(13):2835
Schier, A.F. (2013) Genomics: Zebrafish earns its stripes. Nature. 496:443-444
Xiong, F., Tentner, A.R., Huang, P., Gelas, A., Mosaliganti, K.R., Souhait, L., Rannou, N., Swinburne, I.A., Obholzer, N.D., Cowgill, P.D., Schier, A.F., and Megason, S.G. (2013) Specified neural progenitors sort to form sharp domains after noisy shh signaling. Cell. 153(3):550-561
Levitz, J., Pantoja, C., Gaub, B., Janovjak, H., Reiner, A., Hoagland, A., Schoppik, D., Kane, B., Stawski, P., Schier, A.F., Trauner, D., and Isacoff, E.Y. (2013) Optical control of metabotropic glutamate receptors. Nature Neuroscience. 16(4):507-16
Varshney, G.K., Lu, J., Gildea, D., Huang, H., Pei, W., Yang, Z., Huang, S.C., Schoenfeld, D.S., Pho, N., Casero, D., Hirase, T., Mosbrook-Davis, D.M., Zhang, S., Jao, L.E., Zhang, B., Woods, I.G., Zimmerman, S., Schier, A.F., Wolfsberg, T., Pellegrini, M., Burgess, S.M., and Lin, S. (2013) A large-scale zebrafish gene knockout resource for the genome-wide study of gene function. Genome research. 23(4):727-735
Choi, W.Y., Gemberling, M., Wang, J., Holdway, J.E., Shen, M.C., Karlstrom, R.O., and Poss, K.D. (2013) In vivo monitoring of cardiomyocyte proliferation to identify chemical modifiers of heart regeneration. Development (Cambridge, England). 140(3):660-666
Bianco, I.H., Ma, L.H., Schoppik, D., Robson, D.N., Orger, M.B., Beck, J.C., Li, J.M., Schier, A.F., Engert, F., and Baker, R. (2012) The Tangential Nucleus Controls a Gravito-inertial Vestibulo-ocular Reflex. Current biology : CB. 22(14):1285-1295
Low, S.E., Woods, I.G., Lachance, M., Ryan, J., Schier, A.F., and Saint-Amant, L. (2012) Touch responsiveness in zebrafish requires voltage-gated calcium channel 2.1b. Journal of neurophysiology. 108(1):148-159
Vastenhouw, N.L., and Schier, A.F. (2012) Bivalent histone modifications in early embryogenesis. Current opinion in cell biology. 24(3):374-386
Panizzi, J.R., Becker-Heck, A., Castleman, V.H., Al-Mutairi, D.A., Liu, Y., Loges, N.T., Pathak, N., Austin-Tse, C., Sheridan, E., Schmidts, M., Olbrich, H., Werner, C., Häffner, K., Hellman, N., Chodhari, R., Gupta, A., Kramer-Zucker, A., Olale, F., Burdine, R.D., Schier, A.F., O'Callaghan, C., Chung, E.M., Reinhardt, R., Mitchison, H.M., King, S.M., Omran, H., and Drummond, I.A. (2012) CCDC103 mutations cause primary ciliary dyskinesia by disrupting assembly of ciliary dynein arms. Nature Genetics. 44(6):714-719
Müller, P., Rogers, K.W., Jordan, B.M., Lee, J.S., Robson, D., Ramanathan, S., Schier, A.F. (2012) Differential Diffusivity of Nodal and Lefty Underlies a Reaction-Diffusion Patterning System. Science (New York, N.Y.). 336(6082):721-724
Ahrens, M.B., Li, J.M., Orger, M.B., Robson, D.N., Schier, A.F., Engert, F., and Portugues, R. (2012) Brain-wide neuronal dynamics during motor adaptation in zebrafish. Nature. 485(7399):471-477
Stooke-Vaughan, G.A., Huang, P., Hammond, K.L., Schier, A.F., and Whitfield, T.T. (2012) The role of hair cells, cilia and ciliary motility in otolith formation in the zebrafish otic vesicle. Development (Cambridge, England). 139(10):1777-1787
Xu, C., Fan, Z.P., Müller, P., Fogley, R., Dibiase, A., Trompouki, E., Unternaehrer, J., Xiong, F., Torregroza, I., Evans, T., Megason, S.G., Daley, G.Q., Schier, A.F., Young, R.A., and Zon, L.I. (2012) Nanog-like Regulates Endoderm Formation through the Mxtx2-Nodal Pathway. Developmental Cell. 22(3):625-238
Pauli, A., Valen, E., Lin, M.F., Garber, M., Vastenhouw, N.L., Levin, J.Z., Fan, L., Sandelin, A., Rinn, J.L., Regev, A., and Schier, A.F. (2012) Systematic identification of long non-coding RNAs expressed during zebrafish embryogenesis. Genome research. 22(3):577-591
Rihel, J., and Schier, A.F. (2012) Behavioral screening for neuroactive drugs in zebrafish. Developmental Neurobiology. 72(3):373-385
Pan, Y.A., Choy, M., Prober, D.A., and Schier, A.F. (2012) Robo2 determines subtype-specific axonal projections of trigeminal sensory neurons. Development (Cambridge, England). 139(3):591-600
Choi, W.Y., and Poss, K.D. (2012) Cardiac regeneration. Current topics in developmental biology. 100:319-344
Huang, P., Xiong, F., Megason, S.G., and Schier, A.F. (2012) Attenuation of notch and hedgehog signaling is required for fate specification in the spinal cord. PLoS Genetics. 8(6):e1002762
Pan, Y.A., Caron, S.J., and Schier, A.F. (2012) BAPTI and BAPTISM Birthdating of Neurons in Zebrafish. Cold Spring Harbor protocols. 2012(1):pdb.prot067520
Pan, Y.A., Livet, J., Sanes, J.R., Lichtman, J.W., and Schier, A.F. (2011) Multicolor brainbow imaging in zebrafish. Cold Spring Harbor protocols. 2011:pdb.prot5546
Vastenhouw, N.L., Zhang, Y., Woods, I.G., Imam, F., Regev, A., Liu, X.S., Rinn, J., and Schier, A.F. (2010) Chromatin signature of embryonic pluripotency is established during genome activation. Nature. 464(7290):922-926
Harvey, S.A., Tümpel, S., Dubrulle, J., Schier, A.F., and Smith, J.C. (2010) no tail integrates two modes of mesoderm induction. Development (Cambridge, England). 137(7):1127-1135
Naumann, E.A., Kampff, A.R., Prober, D.A., Schier, A.F., and Engert, F. (2010) Monitoring neural activity with bioluminescence during natural behavior. Nature Neuroscience. 13(4):513-520
Rihel, J., Prober, D.A., Arvanites, A., Lam, K., Zimmerman, S., Jang, S., Haggarty, S.J., Kokel, D., Rubin, L.L., Peterson, R.T., and Schier, A.F. (2010) Zebrafish behavioral profiling links drugs to biological targets and rest/wake regulation. Science (New York, N.Y.). 327(5963):348-351
Rihel, J., Prober, D.A., and Schier, A.F. (2010) Chapter 11 - Monitoring sleep and arousal in zebrafish. Methods in cell biology. 100:281-294
Huang, P., and Schier, A.F. (2009) Dampened Hedgehog signaling but normal Wnt signaling in zebrafish without cilia. Development (Cambridge, England). 136(18):3089-3098
Emran, F., Brooks, J.M., Zimmerman, S.R., Johnson, S.L., and Lue, R.A. (2009) Zebrafish Embryology and Cartilage Staining Protocols for High School Students. Zebrafish. 6(2):139-143
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Kramer-Zucker, A.G., Olale, F., Haycraft, C.J., Yoder, B.K., Schier, A.F., and Drummond, I.A. (2005) Cilia-driven fluid flow in the zebrafish pronephros, brain and Kupffer's vesicle is required for normal organogenesis. Development (Cambridge, England). 132(8):1907-1921
Tyurina, O.V., Guner, B., Popova, E., Feng, J., Schier, A.F., Kohtz, J.D., and Karlstrom, R.O. (2005) Zebrafish Gli3 functions as both an activator and a repressor in Hedgehog signaling. Developmental Biology. 277(2):537-556
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