| Category |
Download File |
Download
w Header |
Column Headers |
File Size |
Number of Records |
|
|
Anatomical Ontologies
|
Zebrafish Anatomy Term
|
|
|
204 KB
|
2,853
|
|
|
|
Zebrafish Anatomy Term Relationships
|
|
|
167 KB
|
5,388
|
|
|
|
Zebrafish Anatomy Term Synonyms
|
|
|
90 KB
|
1,740
|
|
|
|
Zebrafish Development Stage Terms
|
|
|
315 KB
|
13,380
|
|
|
|
Zebrafish Stage Series
|
|
|
2 KB
|
45
|
|
|
Antibody Data
|
Antibodies
|
|
|
108 KB
|
1,361
|
|
|
|
Antibody Expressions in wild-type
|
|
|
238 KB
|
4,288
|
|
|
Fish
|
Fish Components
|
|
|
9 MB
|
52,952
|
|
|
Gene Expression
|
Expression data for wildtype fish
|
|
|
23 MB
|
148,574
|
|
|
|
Expression Environment Description
|
|
|
497 KB
|
7,798
|
|
|
|
Expression Experiment-Figure
|
|
|
13 MB
|
239,283
|
|
|
|
Zebrafish Gene Expression by Stage and Anatomy Term
|
|
|
21 MB
|
231,666
|
|
|
|
ZFIN Antibody Expression Assay Records
|
|
|
815 KB
|
6,574
|
|
|
|
ZFIN Genes with Expression Assay Records
|
|
|
8 MB
|
70,284
|
|
|
Genetic Marker Relationships
|
Genetic Marker Relationships
|
|
|
9 MB
|
93,703
|
|
|
Genetic Markers
|
Genetic Marker
|
|
|
9 MB
|
146,707
|
|
|
|
Previous ZFIN IDs
(includes former and current ZFIN IDs for merged data)
|
|
|
1 MB
|
33,014
|
|
|
|
SNP Data
|
|
|
133 MB
|
2,338,795
|
|
|
Genomic Feature Data
|
All Genomic Features
|
|
|
2 MB
|
32,455
|
|
|
|
Genomic Features and their affected genes
(alleles, deficiencies, translocations)
|
|
|
1 MB
|
18,351
|
|
|
Genotype Data
|
Genotype Backgrounds
|
|
|
423 KB
|
7,121
|
|
|
|
Genotype Features
|
|
|
3 MB
|
20,132
|
|
|
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Genotype Features (removed or displaced genes)
|
|
|
18 KB
|
199
|
|
|
|
Genotype-Publication relation
|
|
|
1 MB
|
32,463
|
|
|
Image Data
|
Image-Figure translations
Note: Images are not provided due to copyright restrictions
|
|
|
4 MB
|
87,619
|
|
|
Mapping Data
|
Mapping Data from the 6 Zebrafish Mapping Panels
|
|
|
1 MB
|
26,654
|
|
|
Morpholino Data
|
Morpholino
|
|
|
771 KB
|
6,313
|
|
|
Orthology Data
|
Drosophila and Zebrafish Orthology
|
|
|
4 KB
|
57
|
|
|
|
Human and Zebrafish Orthology
|
|
|
1 MB
|
14,576
|
|
|
|
Mouse and Zebrafish Orthology
|
|
|
1 MB
|
11,798
|
|
|
|
Phenotypic Zebrafish genes with Human Orthology
|
|
|
94 KB
|
2,211
|
|
|
Phenotype Data
|
Genotype-Figure relation
|
|
|
733 KB
|
19,896
|
|
|
|
Genotypes with Phenotypes
|
|
|
16 MB
|
74,108
|
|
|
|
Genotypes with Phenotypes (obo format)
|
|
|
11 MB
|
76,436
|
|
|
|
Phenotype Environment Description
|
|
|
497 KB
|
8,217
|
|
|
|
Phenotype for Zebrafish genes with fin phenotype
|
|
|
238 KB
|
955
|
|
|
|
Phenotype for Zebrafish genes with Human Orthology
|
|
|
3 MB
|
28,411
|
|
|
|
Phenotype of Zebrafish Genes
|
|
|
15 MB
|
61,314
|
|
|
Previous Names
|
Previous Names
|
|
|
8 MB
|
119,400
|
|
|
Publications
|
ZFIN Bibliography
|
|
|
3 MB
|
15,339
|
|
|
|
ZFIN Marker IDs / UniProtKB IDs to ZFIN Pub IDs & PubMed IDs
|
|
|
4 MB
|
60,398
|
|
|
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ZFIN Publication IDs: ZFIN IDs to PubMed IDs
|
|
|
508 KB
|
19,318
|
|
|
Sequence Coordinates
|
Assembly: Ensembl
|
|
|
175 MB
|
1,103,019
|
|
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Complete Assembly Clones: Ensembl
|
|
|
3 MB
|
33,167
|
|
|
|
Transgenic Insertion: ENSEMBL
|
|
|
2 MB
|
15,223
|
|
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ZFIN Genes with Antibodies: Ensembl
|
|
|
55 KB
|
522
|
|
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|
ZFIN Genes with Expression: Ensembl
|
|
|
1 MB
|
9,440
|
|
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ZFIN Genes with Phenotype: Ensembl
|
|
|
234 KB
|
2,169
|
|
|
|
ZFIN Genes: Ensembl
|
|
|
3 MB
|
20,756
|
|
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ZFIN Morpholinos: Ensembl
|
|
|
530 KB
|
4,530
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|
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Sequence Data
|
Transcripts
|
|
|
3 MB
|
42,316
|
|
|
|
ZFIN Gene IDs indirectly and directly associated with Sequence Accessions via cDNA & EST
|
|
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4 MB
|
92,365
|
|
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ZFIN Gene IDs indirectly associated with Sequence Accessions via cDNA & EST
|
|
|
1 MB
|
41,502
|
|
|
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ZFIN Marker associations to Ensembl IDs
(Only associations with 1:1 relationships between ZFIN marker IDs and Ensembl IDs are stored in
ZFIN.
All associations can be obtained using BioMart http://www.ensembl.org/biomart/martview)
|
|
|
1 MB
|
18,937
|
|
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ZFIN Marker associations to GenBank sequence data
|
|
|
5 MB
|
118,704
|
|
|
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ZFIN Marker associations to GenPept protein data
|
|
|
2 MB
|
44,569
|
|
|
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ZFIN Marker associations to InterPro protein data
|
|
|
107 MB
|
2,267,256
|
|
|
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ZFIN Marker associations to NCBI Gene data
|
|
|
967 KB
|
20,868
|
|
|
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ZFIN Marker associations to RefSeq sequence data
|
|
|
2 MB
|
60,297
|
|
|
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ZFIN Marker associations to Sanger Vega data
|
|
|
2 MB
|
30,610
|
|
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ZFIN Marker associations to UniGene sequence data
|
|
|
907 KB
|
20,173
|
|
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ZFIN Marker associations to UniProt protein data
|
|
|
2 MB
|
47,308
|
|
|
Wildtype Lines
|
Wildtype Lines
|
|
|
1006 bytes
|
29
|
|
|
ZFIN Identifiers
|
ZFIN Identifiers
|
|
|
17 MB
|
207,869
|
|
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