ZFIN Data Reports from: 30 Jan 2015

Warranty Disclaimer and Copyright Notice  
ZFIN data reports are updated every day of the week at 10:10pm PST with the exception of the externally hosted files. The format for each file is described below. All files use tab as the field delimiter. The 'Download File' link will display the file in your browser. Click the download button to save the file onto your local system (includes timestamp and header info). If you choose to link to a ZFIN data page from your web site, append the ZFIN ID to the URL http://zfin.org/
e.g. http://zfin.org/ZDB-GENE-980526-166
for the 'shha' gene. Please direct questions or requests for additional data to ZFIN.
View Archive Files
Category Download File Download
w Header
Column Headers File Size Number of Records
Anatomical Ontologies Zebrafish Anatomy Term
Show
208 KB 2,914
Zebrafish Anatomy Term Relationships
Show
172 KB 5,535
Zebrafish Anatomy Term Synonyms
Show
144 KB 2,735
Zebrafish Development Stage Terms
Show
315 KB 13,380
Zebrafish Stage Series
Show
2 KB 45
Antibody Data Antibodies
Show
137 KB 1,721
Antibody Expressions in wild-type
Show
301 KB 5,410
Fish Fish Components
Show
7 MB 65,686
Gene Expression Expression data for wildtype fish
Show
25 MB 163,800
Expression Environment Description
Show
622 KB 9,852
Expression Experiment-Figure
Show
16 MB 279,413
Zebrafish Gene Expression by Stage and Anatomy Term
Show
25 MB 269,599
ZFIN Antibody Expression Assay Records
Show
1 MB 9,168
ZFIN Genes with Expression Assay Records
Show
10 MB 82,892
Genetic Marker Relationships Genetic Marker Relationships
Show
10 MB 99,823
Genetic Markers Genetic Marker
Show
9 MB 154,198
Previous ZFIN IDs
(includes former and current ZFIN IDs for merged data)
Show
1 MB 33,427
SNP Data
Show
138 MB 2,435,516
Genomic Feature Data All Genomic Features
Show
4 MB 39,945
Construct Components
Show
1 MB 9,076
Genomic Features and their affected genes
(alleles, deficiencies, translocations)
Show
2 MB 25,177
Transgenic Insertions
Show
2 MB 27,345
Genotype Data Genotype Backgrounds
Show
441 KB 7,443
Genotype Features
Show
4 MB 23,031
Genotype Features (removed or displaced genes)
Show
20 KB 215
Genotype-Publication relation
Show
1 MB 36,133
Image Data Image-Figure translations
Note: Images are not provided due to copyright restrictions
Show
4 MB 91,944
Knockdown Reagent Data CRISPR
Show
8 KB 64
Morpholino
Show
1 MB 7,719
TALEN
Show
26 KB 193
Mapping Data Mapping Data from the 6 Zebrafish Mapping Panels
Show
1 MB 26,654
Orthology Data Drosophila and Zebrafish Orthology
Show
5 KB 59
Human and Zebrafish Orthology
Show
1 MB 15,571
Mouse and Zebrafish Orthology
Show
1 MB 12,923
Phenotypic Zebrafish genes with Human Orthology
Show
112 KB 2,621
Phenotype Data Genotype-Figure relation
Show
864 KB 23,537
Genotypes with Phenotypes
Show
13 MB 90,911
Genotypes with Phenotypes
Show
19 MB 87,882
Phenotype Environment Description
Show
648 KB 10,717
Phenotype for Zebrafish genes with fin phenotype
Show
267 KB 1,064
Phenotype for Zebrafish genes with Human Orthology
Show
4 MB 34,909
Phenotype of Zebrafish Genes
Show
17 MB 70,795
Previous Names Previous Names
Show
9 MB 133,029
Publications Gene-Publication relation
Show
18 MB 343,800
ZFIN Bibliography
Show
4 MB 17,944
ZFIN Marker IDs / UniProtKB IDs to ZFIN Pub IDs & PubMed IDs
Show
4 MB 69,654
ZFIN Publication IDs: ZFIN IDs to PubMed IDs
Show
577 KB 22,191
Sequence Coordinates Assembly: Ensembl
Show
161 MB 1,049,577
Complete Assembly Clones: Ensembl
Show
3 MB 33,167
Transgenic Insertion: ENSEMBL
Show
2 MB 15,223
ZFIN Genes with Antibodies: Ensembl
Show
64 KB 605
ZFIN Genes with Expression: Ensembl
Show
1 MB 10,138
ZFIN Genes with Phenotype: Ensembl
Show
278 KB 2,568
ZFIN Genes: Ensembl
Show
4 MB 23,707
ZFIN Morpholinos: Ensembl
Show
813 KB 6,937
Sequence Data Transcripts
Show
5 MB 53,216
ZFIN Gene IDs indirectly and directly associated with Sequence Accessions via cDNA & EST
Show
4 MB 100,171
ZFIN Gene IDs indirectly associated with Sequence Accessions via cDNA & EST
Show
1 MB 41,503
ZFIN Marker associations to Ensembl IDs
(Only associations with 1:1 relationships between ZFIN marker IDs and Ensembl IDs are stored in ZFIN. All associations can be obtained using BioMart http://www.ensembl.org/biomart/martview)
Show
1 MB 22,038
ZFIN Marker associations to GenBank sequence data
Show
5 MB 120,773
ZFIN Marker associations to GenPept protein data
Show
1 MB 41,543
ZFIN Marker associations to InterPro protein data
Show
129 MB 2,727,085
ZFIN Marker associations to NCBI Gene data
Show
1 MB 22,374
ZFIN Marker associations to RefSeq sequence data
Show
3 MB 72,198
ZFIN Marker associations to Sanger Vega data
Show
2 MB 35,114
ZFIN Marker associations to UniGene sequence data
Show
935 KB 20,829
ZFIN Marker associations to UniProt protein data
Show
2 MB 50,026
Wildtype Lines Wildtype Lines
Show
1006 bytes 29
ZFIN Identifiers ZFIN Identifiers
Show
19 MB 224,766

Externally Hosted Files:

The 'File Name'-links point to the latest version. To obtain previous versions you have to check the archive of the external source.
Category Description External Source File Name Update Frequency Format / Header
Gene Ontology Data Gene Ontology (GO) Annotations of Zebrafish Markers
(see also GO Annotation File format at the Gene Ontology Consortium)
geneontology.org gene_association.zfin.gz weekly
Show
Anatomical Ontologies Zebrafish Anatomical Ontology in OBO Format Obofoundry zebrafish_anatomy.obo monthly OBO file format