ZFIN Data Reports from: 19 Dec 2014

Warranty Disclaimer and Copyright Notice  
ZFIN data reports are updated every day of the week at 10:10pm PST with the exception of the externally hosted files. The format for each file is described below. All files use tab as the field delimiter. The 'Download File' link will display the file in your browser. Click the download button to save the file onto your local system (includes timestamp and header info). If you choose to link to a ZFIN data page from your web site, append the ZFIN ID to the URL http://zfin.org/
e.g. http://zfin.org/ZDB-GENE-980526-166
for the 'shha' gene. Please direct questions or requests for additional data to ZFIN.
View Archive Files
Category Download File Download
w Header
Column Headers File Size Number of Records
Anatomical Ontologies Zebrafish Anatomy Term
Show
208 KB 2,914
Zebrafish Anatomy Term Relationships
Show
172 KB 5,535
Zebrafish Anatomy Term Synonyms
Show
144 KB 2,735
Zebrafish Development Stage Terms
Show
315 KB 13,380
Zebrafish Stage Series
Show
2 KB 45
Antibody Data Antibodies
Show
135 KB 1,699
Antibody Expressions in wild-type
Show
295 KB 5,296
Fish Fish Components
Show
7 MB 65,114
Gene Expression Expression data for wildtype fish
Show
25 MB 162,281
Expression Environment Description
Show
608 KB 9,607
Expression Experiment-Figure
Show
16 MB 275,247
Zebrafish Gene Expression by Stage and Anatomy Term
Show
24 MB 265,728
ZFIN Antibody Expression Assay Records
Show
1 MB 8,897
ZFIN Genes with Expression Assay Records
Show
10 MB 81,493
Genetic Marker Relationships Genetic Marker Relationships
Show
10 MB 99,191
Genetic Markers Genetic Marker
Show
9 MB 153,832
Previous ZFIN IDs
(includes former and current ZFIN IDs for merged data)
Show
1 MB 33,420
SNP Data
Show
135 MB 2,370,287
Genomic Feature Data All Genomic Features
Show
4 MB 39,897
Construct Components
Show
1 MB 8,953
Genomic Features and their affected genes
(alleles, deficiencies, translocations)
Show
2 MB 25,167
Transgenic Insertions
Show
2 MB 27,308
Genotype Data Genotype Backgrounds
Show
440 KB 7,430
Genotype Features
Show
3 MB 22,791
Genotype Features (removed or displaced genes)
Show
20 KB 215
Genotype-Publication relation
Show
1 MB 35,766
Image Data Image-Figure translations
Note: Images are not provided due to copyright restrictions
Show
4 MB 91,838
Knockdown Reagent Data CRISPR
Show
8 KB 60
Morpholino
Show
1 MB 7,590
TALEN
Show
26 KB 189
Mapping Data Mapping Data from the 6 Zebrafish Mapping Panels
Show
1 MB 26,654
Orthology Data Drosophila and Zebrafish Orthology
Show
5 KB 59
Human and Zebrafish Orthology
Show
1 MB 15,478
Mouse and Zebrafish Orthology
Show
1 MB 12,807
Phenotypic Zebrafish genes with Human Orthology
Show
110 KB 2,593
Phenotype Data Genotype-Figure relation
Show
849 KB 23,134
Genotypes with Phenotypes
Show
13 MB 89,616
Genotypes with Phenotypes
Show
19 MB 86,632
Phenotype Environment Description
Show
636 KB 10,523
Phenotype for Zebrafish genes with fin phenotype
Show
263 KB 1,049
Phenotype for Zebrafish genes with Human Orthology
Show
3 MB 34,366
Phenotype of Zebrafish Genes
Show
17 MB 69,944
Previous Names Previous Names
Show
9 MB 132,778
Publications Gene-Publication relation
Show
18 MB 339,731
ZFIN Bibliography
Show
4 MB 17,709
ZFIN Marker IDs / UniProtKB IDs to ZFIN Pub IDs & PubMed IDs
Show
4 MB 68,523
ZFIN Publication IDs: ZFIN IDs to PubMed IDs
Show
570 KB 21,918
Sequence Coordinates Assembly: Ensembl
Show
161 MB 1,049,576
Complete Assembly Clones: Ensembl
Show
3 MB 33,167
Transgenic Insertion: ENSEMBL
Show
2 MB 15,223
ZFIN Genes with Antibodies: Ensembl
Show
63 KB 593
ZFIN Genes with Expression: Ensembl
Show
1 MB 9,785
ZFIN Genes with Phenotype: Ensembl
Show
272 KB 2,511
ZFIN Genes: Ensembl
Show
3 MB 21,381
Sequence Data Transcripts
Show
4 MB 52,833
ZFIN Gene IDs indirectly and directly associated with Sequence Accessions via cDNA & EST
Show
4 MB 100,057
ZFIN Gene IDs indirectly associated with Sequence Accessions via cDNA & EST
Show
1 MB 41,505
ZFIN Marker associations to Ensembl IDs
(Only associations with 1:1 relationships between ZFIN marker IDs and Ensembl IDs are stored in ZFIN. All associations can be obtained using BioMart http://www.ensembl.org/biomart/martview)
Show
1 MB 19,706
ZFIN Marker associations to GenBank sequence data
Show
5 MB 120,690
ZFIN Marker associations to GenPept protein data
Show
1 MB 41,526
ZFIN Marker associations to InterPro protein data
Show
128 MB 2,715,097
ZFIN Marker associations to NCBI Gene data
Show
1 MB 22,365
ZFIN Marker associations to RefSeq sequence data
Show
3 MB 72,138
ZFIN Marker associations to Sanger Vega data
Show
2 MB 35,114
ZFIN Marker associations to UniGene sequence data
Show
935 KB 20,823
ZFIN Marker associations to UniProt protein data
Show
2 MB 49,963
Wildtype Lines Wildtype Lines
Show
1006 bytes 29
ZFIN Identifiers ZFIN Identifiers
Show
19 MB 224,143

Externally Hosted Files:

The 'File Name'-links point to the latest version. To obtain previous versions you have to check the archive of the external source.
Category Description External Source File Name Update Frequency Format / Header
Gene Ontology Data Gene Ontology (GO) Annotations of Zebrafish Markers
(see also GO Annotation File format at the Gene Ontology Consortium)
geneontology.org gene_association.zfin.gz weekly
Show
Anatomical Ontologies Zebrafish Anatomical Ontology in OBO Format Obofoundry zebrafish_anatomy.obo monthly OBO file format