ZFIN Data Reports from: 25 Nov 2014

Warranty Disclaimer and Copyright Notice  
ZFIN data reports are updated every day of the week at 10:10pm PST with the exception of the externally hosted files. The format for each file is described below. All files use tab as the field delimiter. The 'Download File' link will display the file in your browser. Click the download button to save the file onto your local system (includes timestamp and header info). If you choose to link to a ZFIN data page from your web site, append the ZFIN ID to the URL http://zfin.org/
e.g. http://zfin.org/ZDB-GENE-980526-166
for the 'shha' gene. Please direct questions or requests for additional data to ZFIN.
View Archive Files
Category Download File Download
w Header
Column Headers File Size Number of Records
Anatomical Ontologies Zebrafish Anatomy Term
Show
208 KB 2,914
Zebrafish Anatomy Term Relationships
Show
172 KB 5,535
Zebrafish Anatomy Term Synonyms
Show
144 KB 2,735
Zebrafish Development Stage Terms
Show
315 KB 13,380
Zebrafish Stage Series
Show
2 KB 45
Antibody Data Antibodies
Show
134 KB 1,685
Antibody Expressions in wild-type
Show
291 KB 5,216
Fish Fish Components
Show
7 MB 64,708
Gene Expression Expression data for wildtype fish
Show
25 MB 161,628
Expression Environment Description
Show
601 KB 9,487
Expression Experiment-Figure
Show
15 MB 273,169
Zebrafish Gene Expression by Stage and Anatomy Term
Show
24 MB 263,784
ZFIN Antibody Expression Assay Records
Show
1 MB 8,699
ZFIN Genes with Expression Assay Records
Show
10 MB 80,798
Genetic Marker Relationships Genetic Marker Relationships
Show
10 MB 95,501
Genetic Markers Genetic Marker
Show
9 MB 148,858
Previous ZFIN IDs
(includes former and current ZFIN IDs for merged data)
Show
1 MB 33,282
SNP Data
Show
135 MB 2,370,287
Genomic Feature Data All Genomic Features
Show
4 MB 39,865
Construct Components
Show
1 MB 8,845
Genomic Features and their affected genes
(alleles, deficiencies, translocations)
Show
2 MB 25,165
Transgenic Insertions
Show
2 MB 27,278
Genotype Data Genotype Backgrounds
Show
439 KB 7,408
Genotype Features
Show
3 MB 22,527
Genotype Features (removed or displaced genes)
Show
20 KB 215
Genotype-Publication relation
Show
1 MB 35,549
Image Data Image-Figure translations
Note: Images are not provided due to copyright restrictions
Show
4 MB 91,824
Knockdown Reagent Data CRISPR
Show
8 KB 60
Morpholino
Show
1 MB 7,288
TALEN
Show
25 KB 187
Mapping Data Mapping Data from the 6 Zebrafish Mapping Panels
Show
1 MB 26,654
Orthology Data Drosophila and Zebrafish Orthology
Show
5 KB 59
Human and Zebrafish Orthology
Show
1 MB 15,454
Mouse and Zebrafish Orthology
Show
1 MB 12,776
Phenotypic Zebrafish genes with Human Orthology
Show
110 KB 2,580
Phenotype Data Genotype-Figure relation
Show
842 KB 22,921
Genotypes with Phenotypes
Show
13 MB 88,853
Genotypes with Phenotypes
Show
18 MB 85,916
Phenotype Environment Description
Show
628 KB 10,394
Phenotype for Zebrafish genes with fin phenotype
Show
261 KB 1,041
Phenotype for Zebrafish genes with Human Orthology
Show
3 MB 34,080
Phenotype of Zebrafish Genes
Show
17 MB 69,502
Previous Names Previous Names
Show
9 MB 132,478
Publications Gene-Publication relation
Show
18 MB 337,028
ZFIN Bibliography
Show
4 MB 17,500
ZFIN Marker IDs / UniProtKB IDs to ZFIN Pub IDs & PubMed IDs
Show
4 MB 67,998
ZFIN Publication IDs: ZFIN IDs to PubMed IDs
Show
564 KB 21,681
Sequence Coordinates Assembly: Ensembl
Show
8 MB 56,755
Complete Assembly Clones: Ensembl
Show
3 MB 33,167
Transgenic Insertion: ENSEMBL
Show
2 MB 15,223
ZFIN Genes with Antibodies: Ensembl
Show
63 KB 589
ZFIN Genes with Expression: Ensembl
Show
1 MB 9,767
ZFIN Genes with Phenotype: Ensembl
Show
271 KB 2,504
ZFIN Genes: Ensembl
Show
3 MB 21,392
Sequence Data Transcripts
Show
4 MB 48,358
ZFIN Gene IDs indirectly and directly associated with Sequence Accessions via cDNA & EST
Show
4 MB 100,047
ZFIN Gene IDs indirectly associated with Sequence Accessions via cDNA & EST
Show
1 MB 41,497
ZFIN Marker associations to Ensembl IDs
(Only associations with 1:1 relationships between ZFIN marker IDs and Ensembl IDs are stored in ZFIN. All associations can be obtained using BioMart http://www.ensembl.org/biomart/martview)
Show
1 MB 19,705
ZFIN Marker associations to GenBank sequence data
Show
5 MB 120,808
ZFIN Marker associations to GenPept protein data
Show
2 MB 44,894
ZFIN Marker associations to InterPro protein data
Show
128 MB 2,714,542
ZFIN Marker associations to NCBI Gene data
Show
1 MB 22,458
ZFIN Marker associations to RefSeq sequence data
Show
3 MB 72,225
ZFIN Marker associations to Sanger Vega data
Show
2 MB 35,114
ZFIN Marker associations to UniGene sequence data
Show
939 KB 20,908
ZFIN Marker associations to UniProt protein data
Show
2 MB 49,796
Wildtype Lines Wildtype Lines
Show
1006 bytes 29
ZFIN Identifiers ZFIN Identifiers
Show
18 MB 219,082

Externally Hosted Files:

The 'File Name'-links point to the latest version. To obtain previous versions you have to check the archive of the external source.
Category Description External Source File Name Update Frequency Format / Header
Gene Ontology Data Gene Ontology (GO) Annotations of Zebrafish Markers
(see also GO Annotation File format at the Gene Ontology Consortium)
geneontology.org gene_association.zfin.gz weekly
Show
Anatomical Ontologies Zebrafish Anatomical Ontology in OBO Format Obofoundry zebrafish_anatomy.obo monthly OBO file format