SchemaSpy Analysis of zfindb.public Generated by
SchemaSpy
Generated by SchemaSpy on Mon Sep 03 04:09 PDT 2018
Database Type: PostgreSQL - 10.0 SourceForge.net


XML Representation
Insertion Order Deletion Order (for database loading/purging scripts)

Table / View Children Parents Columns Rows Comments
accession_bank 2 1 7 1,895,016
accession_version 2 37,820
affected_gene_group_member 4 41,682
alias_group 1 4 6
alias_scope 1 2 5
all_alias_tokens 1 2 54,271
all_anatomy_contains 3 34,597
all_term_contains 2 3 4,395,473
anatomy_display 2 5 13,370
anatomy_stats 6 399,626
annual_stats 5 925
antibody 1 6 6 2,850
antibody_type 1 1 2
apato_infrastructure 7 10 50,270
apato_tag 2 1 10
attribution_type 2 2 9
author 2 4 0
author_publication 2 3 0
average_curation_time_metric 26 25
average_time_per_person 5 0
bl_plate_tracking 3 2,712
blast_database 6 2 15 55
blast_database_origination_type 1 3 6
blast_database_type 1 1 2
blast_hit 2 13 252,465
blast_query 2 2 3 7,840
blast_report 1 4 9,431
blastdb_order 2 4 46
blastdb_regen_content 1 3 2,617
blastdb_run 2 2 0
candidate 1 1 7 44,410
chromosome 4 2 27
clean_expression_fast_search 2 3 31,752
clone 4 12 48,658
clone_problem_type 1 1 7
company 1 3 14 211
company_position 1 3 7
condition 1 1 9
condition_data_type 1 2 4 65
construct 3 2 7 4,562
construct_component 2 8 46,198
construct_figure 2 3 12
construct_marker_relationship 4 4 15,723
controlled_vocabulary 1 4 71
country_code 4 240
curation 4 8 341,759
curation_topic 1 1 23
curator_session 1 5 61,436
daily_indexed_metric 11 385
data_alias 2 4 6 591,939
data_note 3 5 5,816
data_reporting 4 132
database_info 4 2
databasechangelog 14 1,027
databasechangeloglock 4 1
db_link 3 3 7 915,842
disease_annotation 1 4 4 1,843
disease_annotation_model 2 3 1,066
do_oevdispupdate_temp_first 5 0
do_oevdispupdate_temp_second 5 0
doi_attempts 1 3 3,450
editconstruct 1 202
ensdar_mapping 3 57,369
ensdarg_ensdarp_mapping 4 44,487
ensdarg_ottdarg_mapping 2 0
entrez_gene 2 3 51,094
entrez_to_protein 1 4 724,386
entrez_to_xref 1 2 38,723
environment_group 3 29,250
execweb 2 3
experiment 2 2 3 17,233
experiment_condition 6 8 18,650
experiment_condition_restricted 3 4 0
expression_experiment 9 128,368
expression_experiment2 1 8 9 128,368
expression_experiment_bkup 9 128,368
expression_experiment_temp 9 128,368
expression_figure_stage 1 1 5 225,044
expression_pattern_assay 1 5 12
expression_pattern_figure 2 368,117
expression_pattern_figure_bkup 2 368,117
expression_pattern_figure_temp 2 368,117
expression_pattern_infrastructure 5 9 2,278
expression_phenotype_term 2 5 13,926
expression_phenotype_term_controlled_vocab 2 8
expression_result 9 368,117
expression_result2 1 3 5 368,117
expression_result_bkup 8 368,117
expression_result_temp 8 368,117
expression_search_anatomy_generated 3 9,249,097
expression_term_fast_search 5 217,390
external_note 3 5 25,669
external_note_type 1 2 6
external_reference 3 5 46,439
feature 9 3 15 65,460
feature_assay 1 4 65,458
feature_data 5 116
feature_dna_mutation_detail 4 12 36,182
feature_group 7 37,050
feature_group_member 7 391,336
feature_history 5 10 65,875
feature_marker_relationship 4 4 74,125
feature_marker_relationship_type 2 2 6 7
feature_prefix 2 4 458
feature_protein_mutation_detail 4 11 1,628
feature_stats 10 599,970
feature_stats_old 10 599,970
feature_tracking 5 49,521
feature_transcript_mutation_detail 3 5 36,190
feature_type 4 3 11
feature_type_group 2 2 12
feature_type_group_member 2 2 22
feature_type_mutagen_group_member 2 3 96
feature_type_ordering 3 17
fest_lib_inst 1 4 769
figure 4 2 6 100,800
fish 3 2 10 37,564
fish_components 7 56,323
fish_experiment 5 2 5 42,614
fish_genox 3 29,250
fish_str 2 2 17,845
fishmisfortune 10 197,137
foreign_db 3 6 76
foreign_db_contains 7 4 5 83
foreign_db_contains_display_group 1 3 21
foreign_db_contains_display_group_member 1 3 105
foreign_db_data_type 1 4 15
genedom_family_member 2 2 0
genedom_family_name 1 1 192
geneprefix_institution 1 2 10
genotype 7 1 10 24,206
genotype_background 2 2 8,280
genotype_component_significance 2 5 47
genotype_feature 6 6 31,405
genotype_figure_fast_search 4 9 100,087
genotype_group 4 13,773
genotype_group_member 5 0
genox_fish_annotation_search 3 0
genox_fish_annotation_search_bkup 3 17,185
genox_fish_annotation_search_temp 3 0
genox_group 3 0
genox_group_member 4 0
gff3 12 1,641,152
go_evidence_code 3 16
go_flag 1 2 3
go_ontology 1 3 3
go_term 2 6 33,559
heavy_chain_isotype 1 1 19
image 3 7 17 109,690
image_direction 1 1 11
image_form 1 1 5
image_preparation 1 1 6
image_stage 3 3 33,853
image_view 1 1 14
inference_group_member 1 3 191,040
int_data_source 2 3 105,129
int_data_supplier 2 4 103,683
int_fdbcont_analysis_tool 1 2 88
int_image_term 2 2 549
int_person_company 3 5 155
int_person_lab 3 5 5,115
int_person_pub 2 5 49,084
int_vegatype_tscripttype 1 2 20
journal 1 1 12 2,705
lab 2 3 14 1,252
lab_address_update_tracking 1 4 369
lab_position 1 3 10
light_chain_isotype 1 1 13
lines 1 78
lines_tmp 1 63
linkage 1 3 5 15,143
linkage_group 3 2 27
linkage_member 2 1 2 17,353
linkage_member_temp 3 5,843
linkage_membership 2 8 6,659
linkage_membership_search 3 8 13,318
linkage_membership_search_bkup 8 13,318
linkage_membership_search_temp 8 13,318
linkage_old 2 3 4 15,143
linkage_pair 1 2 5 822
linkage_pair_member 3 3 1,644
linkage_single 2 3 16,166
linkages_copy 5 454
longest_bin_resident_metric 5 855
map_metric 4 3 4
mapped_marker 5 15 26,973
marker 20 3 8 165,536
marker_go_term_annotation_extension 2 6 227
marker_go_term_annotation_extension_group 1 1 2 197
marker_go_term_evidence 3 9 15 199,528
marker_go_term_evidence_annotation_created_by_source 3 6
marker_go_term_evidence_annotation_organization 1 4 6
marker_history 5 10 225,407
marker_history_audit 1 7 235,277
marker_history_event 2 1 5
marker_history_reason 2 1 7
marker_relationship 4 5 187,985
marker_relationship_type 2 2 5 32
marker_sequence 2 7 13,508
marker_type_group 4 4 88
marker_type_group_member 2 2 367
marker_types 2 3 59
merge_markers_sql 4 24,065
mesh_heading 1 2 4 354,089
mesh_heading_qualifier 2 3 274,792
mesh_term 2 3 29,018
missing_xpatfig 2 33
monthly_average_curated_metric 20 27
monthly_curated_metric 13 6,624
mutagee 1 5
mutagen 1 1 12
mutant_fast_search 2 2 32,658
mutation_detail_controlled_vocabulary 3 1 5 69
name_precedence 3 19
ncbi_ortholog 1 1 6 154,582
ncbi_ortholog_external_reference 2 4 304,113
noctua_model 1 12
noctua_model_annotation 1 2 169
obsolete_term_replacement 2 3 806
obsolete_term_suggestion 2 3 2,027
omim_phenotype 1 1 4 17,686
omimp_termxref_mapping 2 2 11,055
one_to_one_accession 2 4 15,223
ontology 1 10 16
ontology_subset 2 5 100
organism 5 6 40
ortholog 3 2 8 30,329
ortholog_evidence 3 4 67,629
ortholog_evidence_code 1 3 7
ortholog_external_reference 2 3 74,977
ortholog_load_tracking 7 120
panel_count 3 5 608
paneled_markers 1 10 38,522
panels 1 3 19 7
person 32 1 21 8,509
person_author 3 5 0
pg_stat_statements 23 view
pheno_term 10 123,066
pheno_term_fast_search 7 2,190,457
pheno_term_fast_search_tmp 7 2,190,457
pheno_term_old 10 75,042
phenotype_experiment 1 4 7 55,224
phenotype_figure_group 5 18,419
phenotype_figure_group_member 4 37,196
phenotype_generated_curated_mapping 3 66,840
phenotype_generated_curated_mapping_bkup 3 66,840
phenotype_generated_curated_mapping_temp 3 66,840
phenotype_observation_generated 20 144,872
phenotype_observation_generated_bkup 20 144,872
phenotype_observation_generated_temp 20 144,872
phenotype_source_generated 5 59,054
phenotype_source_generated_bkup 5 59,054
phenotype_source_generated_temp 5 59,054
phenotype_statement 7 10 130,946
primer_set 2 11 7,460
probe_lib 14 33
probe_library 5 14 103
pub_correspondence_received_email 2 10 2,103
pub_correspondence_recipient 2 6 1,261
pub_correspondence_sent_email 2 2 7 1,814
pub_correspondence_sent_email_contains_subject 2 0
pub_correspondence_sent_tracker 3 7 3,744
pub_correspondence_subject 4 3
pub_db_xref 2 4 809
pub_tracking_history 5 10 93,836
pub_tracking_location 1 5 9
pub_tracking_status 1 8 16
publication 19 2 26 34,460
publication_contact_tracking 2 6 0
publication_correspondence 2 6 651
publication_file 2 6 31,133
publication_file_type 1 3 5
publication_note 3 5 35,844
record_attribution 2 5 2,827,108
remove_phenos_ids 1 27
replaced_accession_number 2 1,451
return_recs 9 1,749
run 2 5 9 12
run_candidate 1 2 6 5,961
run_program 1 3 5
run_type 1 1 2
sangerfeatures 1 54
sequence_ambiguity_code 1 2 11
sequence_feature_chromosome_location 3 6 34,471
sequence_feature_chromosome_location_bkup 9 98,953
sequence_feature_chromosome_location_generated 12 351,410
sequence_feature_chromosome_location_generated_bkup 9 149,968
sequence_feature_chromosome_location_generated_temp 9 151,202
sequence_feature_chromosome_location_temp 9 98,953
sequence_type 2 2 6
single 1 1
snp_download 1 3 2,682,238
snp_download_attribution 2 2,680,981
snp_sequence 1 8 2,024
so_zfin_mapping 1 4 72
source_alias 2 4 3,254
source_feature_prefix 2 3 931
source_url 2 4 24
source_url_purpose 1 2 2
stage 8 1 9 45
state_code 3 59
str_group 3 12,173
tables_in_trouble 6 view
term 35 3 12 199,813
term_group 5 20,333
term_relationship 4 4 429,776
term_relationship_type 1 1 98
term_stage 2 3 3,022
term_subset 2 2 124,813
term_xref 1 2 6 373,851
tmp_all_term_contains 3 44,936
tmp_betterfishdump 4 3
tmp_db_link 7 0
tmp_efs_map 5 12,580,214
tmp_esag_predistinct 5 14,504,222
tmp_feature 6 694
tmp_genox_restore 5 0
tmp_zeco_tt 8 4,249
transcript 3 4 44,449
transcript_status 2 4 18
transcript_type 3 6 19
tscript_type_status_definition 2 4 18
unique_location 2 169,594
updates 9 1,493,618
url_ref 1 4 1
validate_check_history 3 84
vector 1 1 2 68
vector_type 1 2 14
video 1 3 389
warehouse_run_tracking 4 5
withdrawn_data 4 8,148
xpat_exp_details_generated 10 142,611
xpat_exp_details_generated_bkup 10 142,551
xpat_exp_details_generated_temp 10 0
xpat_figure_group 5 15,859
xpat_figure_group_member 4 27,885
xpat_results_generated 11 308,425
xpat_results_generated_bkup 11 308,334
xpat_results_generated_temp 11 0
xpatfs_old 5 210,281
zdb_active_data 72 1 4,385,966
zdb_active_source 16 1 50,391
zdb_flag 3 14
zdb_object_type 7 117
zdb_orphan_data 1 3 0
zdb_orphan_source 1 3 0
zdb_replaced_data 1 4 34,236
zdb_submitters 1 1 10 8,509
zfin_accession_number 4 2,684
zfin_ensembl_gene 10 19,178
zmap_pub_pan_mark 3 14 35,840
zygocity 3 1 6 5
           
350 Tables     1,926 81,416,430  
2 Views     29