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Choose program and database:
Program
:
Nucleotide - Nucleotide
Protein - Protein
trans. Nucleotide - Protein
Protein - trans. Nucleotide
trans. Nucleotide - trans. Nucleotide
Database
:
ZFIN Genomic (DNA)
ZFIN RNA/cDNA
ZFIN Genes With Expression
ZFIN Morpholino Sequences
ZFIN MicroRNA Sequences
miRNA Mature
miRNA Stem Loop
GenBank Zebrafish RNA
EST Zebrafish
GenBank Zebrafish mRNA
GenBank Zebrafish Other RNA
GenBank Zebrafish DNA
HTG Zebrafish
GSS Zebrafish
Zebrafish Trace Archive
PREVEGA
======= Protein DB ========
ZFIN Protein
Query sequence
(maximum of 50,000 letters)
:
FASTA / free-text format:
or Sequence ID:
(separate multiple with ",")
or Upload a free-text file:
Options
Search for short, nearly exact matches
Expect:
Word Size:
Set subsequence: From
To
Filter:
Low complexity
Poly-A's filter
Matrix:
------
BLOSUM62
BLOSUM45
BLOSUM80
PAM30
PAM70
SEG - Filter low compositional complexity regions
XNU - Filter short-periodicity repeats