ZFIN ID: ZDB-FIG-150911-21
Choksi et al., 2014 - Systematic discovery of novel ciliary genes through functional genomics in the zebrafish. Development (Cambridge, England)   141:3410-9 Full text @ Development
ADDITIONAL FIGURES
EXPRESSION / LABELING:
Genes:
Fish:
Anatomical Term:
Stage: 26+ somites

Fig. S3

FIGs are enriched in embryos overexpressing Foxj1 as measured by microarray analysis and RT-qPCR. Fifty three genes were selected randomly from the set of genes up-regulated by Foxj1 as determined by microarray analysis. The induction of 50 of these genes was confirmed using reverse transcription and quantitative (RT-qPCR) to compare transcript levels in embryos overexpressing Foxj1 to wild type embryos. These 50 genes showed a substantial increase in expression in response to Foxj1 overexpression. Blue bars indicate the expression fold change as measured by microarray analysis while red bars indicate expression changes measured by RT-qPCR. The y-axis is in a logarithmic scale (log10), error bars are standard errors of the mean. All results are significant by a Student’s t-test (p < 0.05).

Gene Expression Details
Gene Antibody Fish Conditions Stage Anatomy Assay
afg1lb AB standard conditions 26+ somites whole organism RTPCR
hsc5Tg; sq5713Tg standard conditions 26+ somites whole organism RTPCR
aftphb AB standard conditions 26+ somites whole organism RTPCR
hsc5Tg; sq5713Tg standard conditions 26+ somites whole organism RTPCR
ak9 AB standard conditions 26+ somites whole organism RTPCR
hsc5Tg; sq5713Tg standard conditions 26+ somites whole organism RTPCR
arhgef18b AB standard conditions 26+ somites whole organism RTPCR
hsc5Tg; sq5713Tg standard conditions 26+ somites whole organism RTPCR
ccdc78 AB standard conditions 26+ somites whole organism RTPCR
hsc5Tg; sq5713Tg standard conditions 26+ somites whole organism RTPCR
ces3 AB standard conditions 26+ somites whole organism RTPCR
hsc5Tg; sq5713Tg standard conditions 26+ somites whole organism RTPCR
cfap161 AB standard conditions 26+ somites whole organism RTPCR
hsc5Tg; sq5713Tg standard conditions 26+ somites whole organism RTPCR
cfap206 AB standard conditions 26+ somites whole organism RTPCR
hsc5Tg; sq5713Tg standard conditions 26+ somites whole organism RTPCR
chia.4 AB standard conditions 26+ somites whole organism RTPCR
hsc5Tg; sq5713Tg standard conditions 26+ somites whole organism RTPCR
clic6 AB standard conditions 26+ somites whole organism RTPCR
hsc5Tg; sq5713Tg standard conditions 26+ somites whole organism RTPCR
cp AB standard conditions 26+ somites whole organism RTPCR
hsc5Tg; sq5713Tg standard conditions 26+ somites whole organism RTPCR
dlec1 AB standard conditions 26+ somites whole organism RTPCR
hsc5Tg; sq5713Tg standard conditions 26+ somites whole organism RTPCR
fank1 AB standard conditions 26+ somites whole organism RTPCR
hsc5Tg; sq5713Tg standard conditions 26+ somites whole organism RTPCR
fgfbp2b AB standard conditions 26+ somites whole organism RTPCR
hsc5Tg; sq5713Tg standard conditions 26+ somites whole organism RTPCR
gb:co360592 AB standard conditions 26+ somites whole organism RTPCR
hsc5Tg; sq5713Tg standard conditions 26+ somites whole organism RTPCR
hhipl1 AB standard conditions 26+ somites whole organism RTPCR
hsc5Tg; sq5713Tg standard conditions 26+ somites whole organism RTPCR
il1rapl2 AB standard conditions 26+ somites whole organism RTPCR
hsc5Tg; sq5713Tg standard conditions 26+ somites whole organism RTPCR
illr4 AB standard conditions 26+ somites whole organism RTPCR
hsc5Tg; sq5713Tg standard conditions 26+ somites whole organism RTPCR
iqcg AB standard conditions 26+ somites whole organism RTPCR
hsc5Tg; sq5713Tg standard conditions 26+ somites whole organism RTPCR
kcnip1a AB standard conditions 26+ somites whole organism RTPCR
hsc5Tg; sq5713Tg standard conditions 26+ somites whole organism RTPCR
kif6 AB standard conditions 26+ somites whole organism RTPCR
hsc5Tg; sq5713Tg standard conditions 26+ somites whole organism RTPCR
lect2l AB standard conditions 26+ somites whole organism RTPCR
hsc5Tg; sq5713Tg standard conditions 26+ somites whole organism RTPCR
lrrc51 AB standard conditions 26+ somites whole organism RTPCR
hsc5Tg; sq5713Tg standard conditions 26+ somites whole organism RTPCR
magi3b AB standard conditions 26+ somites whole organism RTPCR
hsc5Tg; sq5713Tg standard conditions 26+ somites whole organism RTPCR
masp1 AB standard conditions 26+ somites whole organism RTPCR
hsc5Tg; sq5713Tg standard conditions 26+ somites whole organism RTPCR
myo15b AB standard conditions 26+ somites whole organism RTPCR
hsc5Tg; sq5713Tg standard conditions 26+ somites whole organism RTPCR
plcxd2 AB standard conditions 26+ somites whole organism RTPCR
hsc5Tg; sq5713Tg standard conditions 26+ somites whole organism RTPCR
s100a10a AB standard conditions 26+ somites whole organism RTPCR
hsc5Tg; sq5713Tg standard conditions 26+ somites whole organism RTPCR
scg5 AB standard conditions 26+ somites whole organism RTPCR
hsc5Tg; sq5713Tg standard conditions 26+ somites whole organism RTPCR
si:ch73-242m19.1 AB standard conditions 26+ somites whole organism RTPCR
hsc5Tg; sq5713Tg standard conditions 26+ somites whole organism RTPCR
si:ch211-71m22.1 AB standard conditions 26+ somites whole organism RTPCR
hsc5Tg; sq5713Tg standard conditions 26+ somites whole organism RTPCR
si:ch211-195b15.7 AB standard conditions 26+ somites whole organism RTPCR
hsc5Tg; sq5713Tg standard conditions 26+ somites whole organism RTPCR
si:dkey-26i13.8 AB standard conditions 26+ somites whole organism RTPCR
hsc5Tg; sq5713Tg standard conditions 26+ somites whole organism RTPCR
si:dkey-165a24.9 AB standard conditions 26+ somites whole organism RTPCR
hsc5Tg; sq5713Tg standard conditions 26+ somites whole organism RTPCR
si:dkey-224e22.2 AB standard conditions 26+ somites whole organism RTPCR
hsc5Tg; sq5713Tg standard conditions 26+ somites whole organism RTPCR
slc43a3a AB standard conditions 26+ somites whole organism RTPCR
hsc5Tg; sq5713Tg standard conditions 26+ somites whole organism RTPCR
spa17 AB standard conditions 26+ somites whole organism RTPCR
hsc5Tg; sq5713Tg standard conditions 26+ somites whole organism RTPCR
stx19 AB standard conditions 26+ somites whole organism RTPCR
hsc5Tg; sq5713Tg standard conditions 26+ somites whole organism RTPCR
tp53bp2b AB standard conditions 26+ somites whole organism RTPCR
hsc5Tg; sq5713Tg standard conditions 26+ somites whole organism RTPCR
trak1b AB standard conditions 26+ somites whole organism RTPCR
hsc5Tg; sq5713Tg standard conditions 26+ somites whole organism RTPCR
ttll7 AB standard conditions 26+ somites whole organism RTPCR
hsc5Tg; sq5713Tg standard conditions 26+ somites whole organism RTPCR
wdr27 AB standard conditions 26+ somites whole organism RTPCR
hsc5Tg; sq5713Tg standard conditions 26+ somites whole organism RTPCR
zbbx AB standard conditions 26+ somites whole organism RTPCR
hsc5Tg; sq5713Tg standard conditions 26+ somites whole organism RTPCR
zgc:153738 AB standard conditions 26+ somites whole organism RTPCR
hsc5Tg; sq5713Tg standard conditions 26+ somites whole organism RTPCR
zgc:162324 AB standard conditions 26+ somites whole organism RTPCR
hsc5Tg; sq5713Tg standard conditions 26+ somites whole organism RTPCR
Antibody Labeling Details No data available
Phenotype Details No data available
Acknowledgments:
ZFIN wishes to thank the journal Development (Cambridge, England) for permission to reproduce figures from this article. Please note that this material may be protected by copyright. Full text @ Development