ZFIN

ZFIN ID: ZDB-GENE-991207-1

ZFIN ID: ZDB-GENE-991207-1

CITATIONS (41 total)

Gene Name:	cadherin 4, type 1, R-cadherin (retinal)
Gene Symbol:	cdh4

Babb, S.G., Kotradi, S.M., Shah, B., Chiappini-Williamson, C., Bell, L.N., Schmeiser, G., Chen, E., Liu, Q., and Marrs, J.A. (2005) Zebrafish R-cadherin (Cdh4) controls visual system development and differentiation. Developmental Dynamics : an official publication of the American Association of Anatomists. 233(3):930-945
Esain, V., Kwan, W., Carroll, K.J., Cortes, M., Liu, S.Y., Frechette, G.M., Sheward, L.M., Nissim, S., Goessling, W., North, T.E. (2015) Cannabinoid Receptor-2 Regulates Embryonic Hematopoietic Stem Cell Development via PGE2 and P-selectin Activity. Stem cells (Dayton, Ohio). 33(8):2596-612
Hsieh, C.S., Ko, C.Y., Chen, S.Y., Liu, T.M., Wu, J.S., Hu, C.H., and Sun, C.K. (2008) In vivo long-term continuous observation of gene expression in zebrafish embryo nerve systems by using harmonic generation microscopy and morphant technology. Journal of Biomedical Optics. 13(6):064041
Kashyap, B., Pegorsch, L., Frey, R.A., Sun, C., Shelden, E.A., and Stenkamp, D.L. (2014) Eye-specific gene expression following embryonic ethanol exposure in zebrafish: Roles for heat shock factor 1. Reproductive toxicology (Elmsford, N.Y.). 43:111-124
Kerstetter, A.E., Azodi, E., Marrs, J.A., and Liu, Q. (2004) Cadherin-2 function in the cranial ganglia and lateral line system of developing zebrafish. Developmental Dynamics : an official publication of the American Association of Anatomists. 230(1):137-143
Knüfer, A., Diana, G., Walsh, G.S., Clarke, J.D., Guthrie, S. (2020) Cadherins regulate nuclear topography and function of developing ocular motor circuitry. eLIFE. 9:
Liu, Q., Azodi, E., Kerstetter, A.E., and Wilson, A.L. (2004) Cadherin-2 and cadherin-4 in developing, adult and regenerating zebrafish cerebellum. Brain research. Developmental brain research. 150(1):63-71
Liu, Q., Babb, S.G., Novince, Z.M., Doedens, A.L., Marrs, J., and Raymond, P.A. (2001) Differential expression of cadherin-2 and cadherin-4 in the developing and adult zebrafish visual system. Visual neuroscience. 18(6):923-933
Liu, Q., Duff, R.J., Liu, B., Wilson, A.L., Babb-Clendenon, S.G., Francl, J., and Marrs, J.A. (2006) Expression of cadherin10, a type II classic cadherin gene, in the nervous system of the embryonic zebrafish. Gene expression patterns : GEP. 74(6):1016-1025
Liu, Q., Ensign, R.D., and Azodi, E. (2003) Cadherin-1, -2 and -4 expression in the cranial ganglia and lateral line system of developing zebrafish. Gene expression patterns : GEP. 3(5):653-658
Liu, Q., Frey, R.A., Babb-Clendenon, S.G., Liu, B., Francl, J., Wilson, A.L., Marrs, J.A., and Stenkamp, D.L. (2007) Differential expression of photoreceptor-specific genes in the retina of a zebrafish cadherin2 mutant glass onion and zebrafish cadherin4 morphants. Experimental Eye Research. 84(1):163-175
Liu, Q., Kerstetter, A.E., Azodi, E., and Marrs, J.A. (2003) Cadherin-1, -2, and -11 expression and cadherin-2 function in the pectoral limb bud and fin of the developing zebrafish. Developmental Dynamics : an official publication of the American Association of Anatomists. 228(4):734-739
Liu, Q., Londraville, R.L., Azodi, E., Babb, S.G., Chiappini-Williamson, C., Marrs, J.A., and Raymond, P.A. (2002) Up-regulation of cadherin-2 and cadherin-4 in regenerating visual structures of adult zebrafish. Experimental neurology. 177(2):396-406
Liu, Q., Marrs, J.A., and Raymond, P.A. (1999) Spatial correspondence between R-cadherin expression domains and retinal ganglion cell axons in developing zebrafish. The Journal of comparative neurology. 410(2):290-302
Liu, Q., Marrs, J.A., Azodi, E., Kerstetter, A.E., Babb, S.G., and Hashmi, L. (2004) Differential expression of cadherins in the developing and adult zebrafish olfactory system. The Journal of comparative neurology. 478(3):269-281
Liu, Q., Marrs, J.A., Chuang, J.C., and Raymond, P.A. (2001) Cadherin-4 expression in the zebrafish central nervous system and regulation by ventral midline signaling. Brain research. Developmental brain research. 131(1-2):17-29
Liu, Q., Sanborn, K.L., Cobb, N., Raymond, P.A., and Marrs, J.A. (1999) R-cadherin expression in the developing and adult zebrafish visual system. The Journal of comparative neurology. 410(2):303-319
Liu, Y., Kassack, M.E., McFaul, M.E., Christensen, L.N., Siebert, S., Wyatt, S.R., Kamei, C.N., Horst, S., Arroyo, N., Drummond, I.A., Juliano, C.E., Draper, B.W. (2022) Single-cell transcriptome reveals insights into the development and function of the zebrafish ovary. eLIFE. 11:
Novince, Z.M., Azodi, E., Marrs, J.A., Raymond, P.A., and Liu, Q. (2003) Cadherin expression in the inner ear of developing zebrafish. Gene expression patterns : GEP. 3(3):337-339
Owen, N., Toms, M., Young, R.M., Eintracht, J., Sarkar, H., Brooks, B.P., Moosajee, M., Genomics England Research Consortium (2022) Identification of 4 novel human ocular coloboma genes ANK3, BMPR1B, PDGFRA, and CDH4 through evolutionary conserved vertebrate gene analysis. Genetics in medicine : official journal of the American College of Medical Genetics. 24(5):1073-1084
Picton, L.D., Bertuzzi, M., Pallucchi, I., Fontanel, P., Dahlberg, E., Björnfors, E.R., Iacoviello, F., Shearing, P.R., El Manira, A. (2021) A spinal organ of proprioception for integrated motor action feedback. Neuron. 109(7):1188-1201.e7
Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J., and Marra,M.A. (2002) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proceedings of the National Academy of Sciences of the United States of America. 99(26):16899-903
Wilson, A.L., Shen, Y.C., Babb-Clendenon, S.G., Rostedt, J., Liu, B., Barald, K.F., Marrs, J.A., and Liu, Q. (2007) Cadherin-4 plays a role in the development of zebrafish cranial ganglia and lateral line system. Developmental Dynamics : an official publication of the American Association of Anatomists. 236(3):893-902
Xing, C., Gong, B., Xue, Y., Han, Y., Wang, Y., Meng, A., Jia, S. (2015) TGFβ1a regulates zebrafish posterior lateral line formation via Smad5 mediated pathway. Journal of molecular cell biology. 7(1):48-61

Liu, Y., Kassack, M.E., McFaul, M.E., Christensen, L.N., Siebert, S., Wyatt, S.R., Kamei, C.N., Horst, S., Arroyo, N., Drummond, I.A., Juliano, C.E., Draper, B.W. (2022) Single-cell transcriptome reveals insights into the development and function of the zebrafish ovary. eLIFE. 11:
Owen, N., Toms, M., Young, R.M., Eintracht, J., Sarkar, H., Brooks, B.P., Moosajee, M., Genomics England Research Consortium (2022) Identification of 4 novel human ocular coloboma genes ANK3, BMPR1B, PDGFRA, and CDH4 through evolutionary conserved vertebrate gene analysis. Genetics in medicine : official journal of the American College of Medical Genetics. 24(5):1073-1084
Picton, L.D., Bertuzzi, M., Pallucchi, I., Fontanel, P., Dahlberg, E., Björnfors, E.R., Iacoviello, F., Shearing, P.R., El Manira, A. (2021) A spinal organ of proprioception for integrated motor action feedback. Neuron. 109(7):1188-1201.e7
Knüfer, A., Diana, G., Walsh, G.S., Clarke, J.D., Guthrie, S. (2020) Cadherins regulate nuclear topography and function of developing ocular motor circuitry. eLIFE. 9:
Esain, V., Kwan, W., Carroll, K.J., Cortes, M., Liu, S.Y., Frechette, G.M., Sheward, L.M., Nissim, S., Goessling, W., North, T.E. (2015) Cannabinoid Receptor-2 Regulates Embryonic Hematopoietic Stem Cell Development via PGE2 and P-selectin Activity. Stem cells (Dayton, Ohio). 33(8):2596-612
Xing, C., Gong, B., Xue, Y., Han, Y., Wang, Y., Meng, A., Jia, S. (2015) TGFβ1a regulates zebrafish posterior lateral line formation via Smad5 mediated pathway. Journal of molecular cell biology. 7(1):48-61
Kashyap, B., Pegorsch, L., Frey, R.A., Sun, C., Shelden, E.A., and Stenkamp, D.L. (2014) Eye-specific gene expression following embryonic ethanol exposure in zebrafish: Roles for heat shock factor 1. Reproductive toxicology (Elmsford, N.Y.). 43:111-124
Hsieh, C.S., Ko, C.Y., Chen, S.Y., Liu, T.M., Wu, J.S., Hu, C.H., and Sun, C.K. (2008) In vivo long-term continuous observation of gene expression in zebrafish embryo nerve systems by using harmonic generation microscopy and morphant technology. Journal of Biomedical Optics. 13(6):064041
Liu, Q., Frey, R.A., Babb-Clendenon, S.G., Liu, B., Francl, J., Wilson, A.L., Marrs, J.A., and Stenkamp, D.L. (2007) Differential expression of photoreceptor-specific genes in the retina of a zebrafish cadherin2 mutant glass onion and zebrafish cadherin4 morphants. Experimental Eye Research. 84(1):163-175
Wilson, A.L., Shen, Y.C., Babb-Clendenon, S.G., Rostedt, J., Liu, B., Barald, K.F., Marrs, J.A., and Liu, Q. (2007) Cadherin-4 plays a role in the development of zebrafish cranial ganglia and lateral line system. Developmental Dynamics : an official publication of the American Association of Anatomists. 236(3):893-902
Liu, Q., Duff, R.J., Liu, B., Wilson, A.L., Babb-Clendenon, S.G., Francl, J., and Marrs, J.A. (2006) Expression of cadherin10, a type II classic cadherin gene, in the nervous system of the embryonic zebrafish. Gene expression patterns : GEP. 74(6):1016-1025
Babb, S.G., Kotradi, S.M., Shah, B., Chiappini-Williamson, C., Bell, L.N., Schmeiser, G., Chen, E., Liu, Q., and Marrs, J.A. (2005) Zebrafish R-cadherin (Cdh4) controls visual system development and differentiation. Developmental Dynamics : an official publication of the American Association of Anatomists. 233(3):930-945
Kerstetter, A.E., Azodi, E., Marrs, J.A., and Liu, Q. (2004) Cadherin-2 function in the cranial ganglia and lateral line system of developing zebrafish. Developmental Dynamics : an official publication of the American Association of Anatomists. 230(1):137-143
Liu, Q., Azodi, E., Kerstetter, A.E., and Wilson, A.L. (2004) Cadherin-2 and cadherin-4 in developing, adult and regenerating zebrafish cerebellum. Brain research. Developmental brain research. 150(1):63-71
Liu, Q., Marrs, J.A., Azodi, E., Kerstetter, A.E., Babb, S.G., and Hashmi, L. (2004) Differential expression of cadherins in the developing and adult zebrafish olfactory system. The Journal of comparative neurology. 478(3):269-281
Liu, Q., Ensign, R.D., and Azodi, E. (2003) Cadherin-1, -2 and -4 expression in the cranial ganglia and lateral line system of developing zebrafish. Gene expression patterns : GEP. 3(5):653-658
Liu, Q., Kerstetter, A.E., Azodi, E., and Marrs, J.A. (2003) Cadherin-1, -2, and -11 expression and cadherin-2 function in the pectoral limb bud and fin of the developing zebrafish. Developmental Dynamics : an official publication of the American Association of Anatomists. 228(4):734-739
Novince, Z.M., Azodi, E., Marrs, J.A., Raymond, P.A., and Liu, Q. (2003) Cadherin expression in the inner ear of developing zebrafish. Gene expression patterns : GEP. 3(3):337-339
Liu, Q., Londraville, R.L., Azodi, E., Babb, S.G., Chiappini-Williamson, C., Marrs, J.A., and Raymond, P.A. (2002) Up-regulation of cadherin-2 and cadherin-4 in regenerating visual structures of adult zebrafish. Experimental neurology. 177(2):396-406
Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J., and Marra,M.A. (2002) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proceedings of the National Academy of Sciences of the United States of America. 99(26):16899-903
Liu, Q., Babb, S.G., Novince, Z.M., Doedens, A.L., Marrs, J., and Raymond, P.A. (2001) Differential expression of cadherin-2 and cadherin-4 in the developing and adult zebrafish visual system. Visual neuroscience. 18(6):923-933
Liu, Q., Marrs, J.A., Chuang, J.C., and Raymond, P.A. (2001) Cadherin-4 expression in the zebrafish central nervous system and regulation by ventral midline signaling. Brain research. Developmental brain research. 131(1-2):17-29
Liu, Q., Marrs, J.A., and Raymond, P.A. (1999) Spatial correspondence between R-cadherin expression domains and retinal ganglion cell axons in developing zebrafish. The Journal of comparative neurology. 410(2):290-302
Liu, Q., Sanborn, K.L., Cobb, N., Raymond, P.A., and Marrs, J.A. (1999) R-cadherin expression in the developing and adult zebrafish visual system. The Journal of comparative neurology. 410(2):303-319

Additional Citations (17):

ZFIN Staff (2023) Automated Curation of UniProt Database Links. Automated Data Submission.

ZFIN Staff (2022) Electronic Gene Ontology annotations created by ARBA machine learning models. Automated Data Submission.

ZFIN Staff (2020) Addition of links from ZFIN to Expression Atlas. Semi-automated Curation.

ZFIN Staff (2017) Curation of PANTHER Gene IDs. Automated Data Submission.

ZFIN Staff (2017) Curation of Alliance of Genome Resources Database Links. Automated Data Submission.

UniProt curators (2015) Electronic Gene Ontology annotations created by transferring manual GO annotations between related proteins based on shared sequence features.. Automated Data Submission.

Busch-Nentwich, E., Kettleborough, R., Dooley, C. M., Scahill, C., Sealy, I., White, R., Herd, C., Mehroke, S., Wali, N., Carruthers, S., Hall, A., Collins, J., Gibbons, R., Pusztai, Z., Clark, R., and Stemple, D.L. (2013) Sanger Institute Zebrafish Mutation Project mutant data submission. ZFIN Direct Data Submission.

ZFIN Staff (2013) Semi-automated association of ENSDARG identifiers with ZFIN genes for the ZMP project. Semi-automated Curation.

UniProt-GOA (2011) Gene Ontology annotation based on the automatic assignment of UniProtKB Subcellular Location terms in UniProtKB/TrEMBL entries. Manually curated data.

Gaudet, P., Livstone, M., Thomas, P., The Reference Genome Project (2010) Annotation inferences using phylogenetic trees. Automated Data Submission.

ZFIN Staff (2007) Microarray Expression to Gene Association in ZFIN. Semi-automated Curation.

ZFIN Staff (2006) Curation of Ensembl Database Links. Automated Data Submission.

ZFIN Staff (2004) ZGC Data Curation and Association in ZFIN by ZFIN Staff. Semi-automated Curation.

ZFIN Staff (2003) Curation of VEGA Database Links. Automated Data Submission.

ZFIN Staff (2002) Gene Ontology Annotation Through Association of UniProt Keywords with GO Terms. Automated Data Submission.

ZFIN Staff (2002) Curation of NCBI Gene Data Via Shared RNA Sequence IDs. Automated Data Submission.

ZFIN Staff (2002) Gene Ontology Annotation Through Association of InterPro Records with GO Terms. Automated Data Submission.