ZFIN Publication List

ZFIN ID: ZDB-ATB-090304-4

CITATIONS (73 total)

Antibody Name: Ab2-fn

Allanki, S., Strilic, B., Scheinberger, L., Onderwater, Y.L., Marks, A., Günther, S., Preussner, J., Kikhi, K., Looso, M., Stainier, D.Y.R., Reischauer, S. (2021) Interleukin-11 signaling promotes cellular reprogramming and limits fibrotic scarring during tissue regeneration. Science advances. 7:eabg6497

Arrington, C.B., and Yost, H.J. (2009) Extra-embryonic syndecan 2 regulates organ primordia migration and fibrillogenesis throughout the zebrafish embryo. Development (Cambridge, England). 136(18):3143-3152

Bryan, C.D., Casey, M.A., Pfeiffer, R.L., Jones, B.W., Kwan, K.M. (2020) Optic cup morphogenesis requires neural crest-mediated basement membrane assembly. Development (Cambridge, England). 147(4):

Bryan, C.D., Chien, C.B., Kwan, K.M. (2016) Loss of laminin alpha 1 results in multiple structural defects and divergent effects on adhesion during vertebrate optic cup morphogenesis. Developmental Biology. 416(2):324-37

Cao, J., Navis, A., Cox, B.D., Dickson, A.L., Gemberling, M., Karra, R., Bagnat, M., Poss, K.D. (2016) Single epicardial cell transcriptome sequencing identifies Caveolin-1 as an essential factor in zebrafish heart regeneration. Development (Cambridge, England). 143(2):232-43

Cao, M., Ouyang, J., Guo, J., Lin, S., Chen, S. (2018) Metalloproteinase Adamts16 Is Required for Proper Closure of the Optic Fissure. Investigative ophthalmology & visual science. 59:1167-1177

Chablais, F., and Jazwinska, A. (2012) The regenerative capacity of the zebrafish heart is dependent on TGFβ signaling. Development (Cambridge, England). 139(11):1921-1930

Chaudhury, S., Okuda, K.S., Koltowska, K., Lagendijk, A.K., Paterson, S., Baillie, G.J., Simons, C., Smith, K.A., Hogan, B.M., Bower, N.I. (2020) Localised Collagen2a1 secretion supports lymphatic endothelial cell migration in the zebrafish embryo. Development (Cambridge, England). 147(18):

Chou, C.W., Chiu, C.H., and Liu, Y.W. (2013) Fibronectin mediates correct positioning of the interrenal organ in zebrafish. Developmental Dynamics : an official publication of the American Association of Anatomists. 242(5):432-443

Chou, C.W., Hsu, H.C., You, M.S., Lin, J., Liu, Y.W. (2016) The endoderm indirectly influences morphogenetic movements of the zebrafish head kidney through the posterior cardinal vein and VegfC. Scientific Reports. 6:30677

Chou, C.W., Lin, J., Hou, H.Y., Liu, Y.W. (2016) Visualizing the Interrenal Steroidogenic Tissue and Its Vascular Microenvironment in Zebrafish. Journal of visualized experiments : JoVE. (118)

Chow, R.W., Fukui, H., Chan, W.X., Tan, K.S.J., Roth, S., Duchemin, A.L., Messaddeq, N., Nakajima, H., Liu, F., Faggianelli-Conrozier, N., Klymchenko, A.S., Choon Hwai, Y., Mochizuki, N., Vermot, J. (2022) Cardiac forces regulate zebrafish heart valve delamination by modulating Nfat signaling. PLoS Biology. 20:e3001505

Chung, W.S., Shin, C.H., and Stainier, D.Y. (2008) Bmp2 signaling regulates the hepatic versus pancreatic fate decision. Developmental Cell. 15(5):738-748

Collins, M.M., Maischein, H.M., Dufourcq, P., Charpentier, M., Blader, P., Stainier, D.Y. (2018) Pitx2c orchestrates embryonic axis extension via mesendodermal cell migration. eLIFE. 7:

Compagnon, J., Barone, V., Rajshekar, S., Kottmeier, R., Pranjic-Ferscha, K., Behrndt, M., Heisenberg, C. (2014) The Notochord Breaks Bilateral Symmetry by Controlling Cell Shapes in the Zebrafish Laterality Organ. Developmental Cell. 31:774-783

Costa, M.L., Escaleira, R.C., Jazenko, F., and Mermelstein, C.S. (2008) Cell adhesion in zebrafish myogenesis: Distribution of intermediate filaments, microfilaments, intracellular adhesion structures and extracellular matrix. Cell motility and the cytoskeleton. 65(10):801-815

Cronan, M.R., Beerman, R.W., Rosenberg, A.F., Saelens, J.W., Johnson, M.G., Oehlers, S.H., Sisk, D.M., Jurcic Smith, K.L., Medvitz, N.A., Miller, S.E., Trinh, L.A., Fraser, S.E., Madden, J.F., Turner, J., Stout, J.E., Lee, S., Tobin, D.M. (2016) Macrophage Epithelial Reprogramming Underlies Mycobacterial Granuloma Formation and Promotes Infection. Immunity. 45:861-876

Câmara-Pereira, E.S., Campos, L.M., Vannier-Santos, M.A., Mermelstein, C.S., and Costa, M.L. (2009) Distribution of cytoskeletal and adhesion proteins in adult zebrafish skeletal muscle. Histology and histopathology. 24(2):187-196

Dasgupta, A., Merkel, M., Clark, M.J., Jacob, A.E., Dawson, J.E., Manning, M.L., Amack, J.D. (2018) Cell volume changes contribute to epithelial morphogenesis in zebrafish Kupffer's vesicle. eLIFE. 7

Duchemin, A.L., Vignes, H., Vermot, J. (2019) Mechanically activated Piezo channels modulate outflow tract valve development through the Yap1 and Klf2-Notch signaling axis. eLIFE. 8:

Fazio, M., van Rooijen, E., Dang, M., van de Hoek, G., Ablain, J., Mito, J.K., Yang, S., Thomas, A., Michael, J., Fabo, T., Modhurima, R., Pessina, P., Kaufman, C.K., Zhou, Y., White, R.M., Zon, L.I. (2021) SATB2 induction of a neural crest mesenchyme-like program drives melanoma invasion and drug resistance. eLIFE. 10:

Garavito-Aguilar, Z.V., Riley, H.E., and Yelon, D. (2010) Hand2 ensures an appropriate environment for cardiac fusion by limiting Fibronectin function. Development (Cambridge, England). 137(19):3215-3220

Govindan, J., Iovine, M.K. (2015) Dynamic remodeling of the extra cellular matrix during zebrafish fin regeneration. Gene expression patterns : GEP. 19(1-2):21-9

Guillon, E., Das, D., Jülich, D., Hassan, A.R., Geller, H., Holley, S. (2020) Fibronectin is a smart adhesive that both influences and responds to the mechanics of early spinal column development. eLIFE. 9:

Gunawan, F., Gentile, A., Fukuda, R., Tsedeke, A.T., Jiménez-Amilburu, V., Ramadass, R., Iida, A., Sehara-Fujisawa, A., Stainier, D.Y.R. (2019) Focal adhesions are essential to drive zebrafish heart valve morphogenesis. The Journal of cell biology. 218(3):1039-1054

Gunawan, F., Gentile, A., Gauvrit, S., Stainier, D., Bensimon-Brito, A. (2020) Nfatc1 Promotes Interstitial Cell Formation During Cardiac Valve Development in Zebrafish. Circulation research. 126(8):968-984

Hayes, J.M., Hartsock, A., Clark, B.S., Napier, H.R., Link, B.A., and Gross, J.M. (2012) Integrin α5/fibronectin1 and focal adhesion kinase are required for lens fiber morphogenesis in zebrafish. Molecular biology of the cell. 23(24):4725-4738

Hu, B., Gao, Y., Davies, L., Woo, S., Topczewski, J., Jessen, J.R., Lin, F. (2018) Glypican 4 and Mmp14 interact in regulating the migration of anterior endodermal cells by limiting extracellular matrix deposition. Development (Cambridge, England). 145(17):

Ikeda, T., Inamori, K., Kawanishi, T., Takeda, H. (2022) Reemployment of Kupffer's vesicle cells into axial and paraxial mesoderm via transdifferentiation. Development, growth & differentiation. 64(3):163-177

Jacob, A.E., Amack, J.D., Turner, C.E. (2017) Paxillin Genes and Actomyosin Contractility Regulate Myotome Morphogenesis in Zebrafish. Developmental Biology. 425(1):70-84

Jenkins, M.H., Alrowaished, S.S., Goody, M.F., Crawford, B.D., Henry, C.A. (2016) Laminin and Matrix metalloproteinase 11 regulate Fibronectin levels in the zebrafish myotendinous junction. Skeletal muscle. 6:18

John, N., Kolb, J., Wehner, D. (2022) Mechanical spinal cord transection in larval zebrafish and subsequent whole-mount histological processing. STAR protocols. 3:101093

Jülich, D., Cobb, G., Melo, A.M., McMillen, P., Lawton, A.K., Mochrie, S.G., Rhoades, E., Holley, S.A. (2015) Cross-Scale Integrin Regulation Organizes ECM and Tissue Topology. Developmental Cell. 34(1):33-44

Jülich, D., Holley, S.A. (2024) Live imaging of Fibronectin 1a-mNeonGreen and Fibronectin 1b-mCherry knock-in alleles during early zebrafish development. Cells & development. 177:203900

Jülich, D., Mould, A.P., Koper, E., and Holley, S.A. (2009) Control of extracellular matrix assembly along tissue boundaries via Integrin and Eph/Ephrin signaling. Development (Cambridge, England). 136(17):2913-2921

Kara, N., Wei, C., Commanday, A.C., Patton, J.G. (2017) miR-27 regulates chondrogenesis by suppressing Focal Adhesion Kinase during pharyngeal arch development. Developmental Biology. 429(1):321-334

Kimelman, D., Smith, N.L., Lai, J.K.H., Stainier, D.Y. (2017) Regulation of posterior body and epidermal morphogenesis in Zebrafish by localized Yap1 and Wwtr1. eLIFE. 6

Lackner, S., Schwendinger-Schreck, J., Jülich, D., and Holley, S.A. (2013) Segmental assembly of fibronectin matrix requires rap1b and integrin alpha5. Developmental Dynamics : an official publication of the American Association of Anatomists. 242(2):122-131

Lai, Z.Y., Yang, C.C., Chen, P.H., Chen, W.C., Lai, T.Y., Lu, G.Y., Yang, C.Y., Wang, K.Y., Liu, W.C., Chen, Y.C., Liu, L.Y., Chuang, Y.J. (2024) Syndecan-4 is required for early-stage repair responses during zebrafish heart regeneration. Molecular biology reports. 51:604

Liu, Y.H., Jakobsen, J.S., Valentin, G., Amarantos, I., Gilmour, D.T., and Furlong, E.E. (2009) A Systematic Analysis of Tinman Function Reveals Eya and JAK-STAT Signaling as Essential Regulators of Muscle Development. Developmental Cell. 16(2):280-291

Love, A.M., Prince, D.J., Jessen, J.R. (2018) Vangl2-dependent regulation of membrane protrusions and directed migration requires a fibronectin extracellular matrix. Development (Cambridge, England). 145(22):

Mahabaleshwar, H., Asharani, P.V., Loo, T.Y., Koh, S.Y., Pitman, M.R., Kwok, S., Ma, J., Hu, B., Lin, F., Li Lok, X., Pitson, S.M., Saunders, T.E., Carney, T.J. (2022) Slit-Robo signalling establishes a Sphingosine-1-phosphate gradient to polarise fin mesenchyme. EMBO reports. 23(8):e54464

Mana, G., Clapero, F., Panieri, E., Panero, V., Böttcher, R.T., Tseng, H.Y., Saltarin, F., Astanina, E., Wolanska, K.I., Morgan, M.R., Humphries, M.J., Santoro, M.M., Serini, G., Valdembri, D. (2016) PPFIA1 drives active α5β1 integrin recycling and controls fibronectin fibrillogenesis and vascular morphogenesis. Nature communications. 7:13546

Marro, J., Pfefferli, C., de Preux Charles, A.S., Bise, T., Jaźwińska, A. (2016) Collagen XII Contributes to Epicardial and Connective Tissues in the Zebrafish Heart during Ontogenesis and Regeneration. PLoS One. 11:e0165497

McMillen, P., Chatti, V., Jülich, D., Holley, S.A. (2016) A Sawtooth Pattern of Cadherin 2 Stability Mechanically Regulates Somite Morphogenesis. Current biology : CB. 26(4):542-9

Monnot, P., Gangatharan, G., Baraban, M., Pottin, K., Cabrera, M., Bonnet, I., Breau, M.A. (2021) Intertissue mechanical interactions shape the olfactory circuit in zebrafish. EMBO reports. 23(2):e52963

Mukherjee, D., Wagh, G., Mokalled, M.H., Kontarakis, Z., Dickson, A.L., Rayrikar, A., Günther, S., Poss, K.D., Stainier, D.Y.R., Patra, C. (2020) Ccn2a/Ctgfa is an injury-induced matricellular factor that promotes cardiac regeneration in zebrafish. Development (Cambridge, England). 148(2):

Paolini, A., Sharipova, D., Lange, T., Abdelilah-Seyfried, S. (2023) Wnt9 directs zebrafish heart tube assembly via a combination of canonical and non-canonical pathway signaling. Development (Cambridge, England). 150(18):

Prince, D.J., Jessen, J.R. (2019) Dorsal convergence of gastrula cells requires a Vangl2 and adhesion protein-dependent change in protrusive activity. Development (Cambridge, England). 146(22):

Qiao, L., Gao, H., Zhang, T., Jing, L., Xiao, C., Xiao, Y., Luo, N., Zhu, H., Meng, W., Xu, H., Mo, X. (2014) Snail modulates the assembly of fibronectin via alpha5 integrin for myocardial migration in zebrafish embryos. Scientific Reports. 4:4470

Reuter, H., Perner, B., Wahl, F., Rohde, L., Koch, P., Groth, M., Buder, K., Englert, C. (2022) Aging Activates the Immune System and Alters the Regenerative Capacity in the Zebrafish Heart. Cells. 11(3):

Rho, S.S., Kobayashi, I., Oguri-Nakamura, E., Ando, K., Fujiwara, M., Kamimura, N., Hirata, H., Iida, A., Iwai, Y., Mochizuki, N., Fukuhara, S. (2019) Rap1b Promotes Notch-Signal-Mediated Hematopoietic Stem Cell Development by Enhancing Integrin-Mediated Cell Adhesion. Developmental Cell. 49(5):681-696.e6

Ryckebüsch, L., Hernandez, L., Wang, C., Phan, J., Yelon, D. (2016) Tmem2 regulates cell-matrix interactions that are essential for muscle fiber attachment. Development (Cambridge, England). 143(16):2965-72

Sakaguchi, T.F., Sadler, K.C., Crosnier, C., and Stainier, D.Y. (2008) Endothelial Signals Modulate Hepatocyte Apicobasal Polarization in Zebrafish. Current biology : CB. 18(20):1565-1571

Sallin, P., Jaźwińska, A. (2016) Acute stress is detrimental to heart regeneration in zebrafish. Open Biology. 6(3)

Schumacher, J.A., Bloomekatz, J., Garavito-Aguilar, Z.V., and Yelon, D. (2013) tal1 regulates the formation of intercellular junctions and the maintenance of identity in the endocardium. Developmental Biology. 383(2):214-226

She, P., Gao, B., Li, D., Wu, C., Zhu, X., He, Y., Mo, F., Qi, Y., Jin, D., Chen, Y., Zhao, X., Lin, J., Hu, H., Li, J., Zhang, B., Xie, P., Lin, C., Christoffels, V.M., Wu, Y., Zhu, P., Zhong, T.P. (2025) The transcriptional repressor HEY2 regulates mitochondrial oxidative respiration to maintain cardiac homeostasis. Nature communications. 16:232

Sidhaye, J., Norden, C. (2017) Concerted action of neuroepithelial basal shrinkage and active epithelial migration ensures efficient optic cup morphogenesis. eLIFE. 6

Simsek, M.F., Özbudak, E.M. (2018) Spatial Fold Change of FGF Signaling Encodes Positional Information for Segmental Determination in Zebrafish. Cell Reports. 24:66-78.e8

Smutny, M., Ákos, Z., Grigolon, S., Shamipour, S., Ruprecht, V., Čapek, D., Behrndt, M., Papusheva, E., Tada, M., Hof, B., Vicsek, T., Salbreux, G., Heisenberg, C.P. (2017) Friction forces position the neural anlage. Nature cell biology. 19(4):306-317

Steed, E., Faggianelli, N., Roth, S., Ramspacher, C., Concordet, J.P., Vermot, J. (2016) klf2a couples mechanotransduction and zebrafish valve morphogenesis through fibronectin synthesis. Nature communications. 7:11646

Theodore, L.N., Hagedorn, E.J., Cortes, M., Natsuhara, K., Liu, S.Y., Perlin, J.R., Yang, S., Daily, M.L., Zon, L.I., North, T.E. (2017) Distinct Roles for Matrix Metalloproteinases 2 and 9 in Embryonic Hematopoietic Stem Cell Emergence, Migration, and Niche Colonization. Stem Cell Reports. 8(5):1226-1241

Tlili, S., Yin, J., Rupprecht, J.F., Mendieta-Serrano, M.A., Weissbart, G., Verma, N., Teng, X., Toyama, Y., Prost, J., Saunders, T.E. (2019) Shaping the zebrafish myotome by intertissue friction and active stress. Proceedings of the National Academy of Sciences of the United States of America. 116(51):25430-25439

Tsata, V., Möllmert, S., Schweitzer, C., Kolb, J., Möckel, C., Böhm, B., Rosso, G., Lange, C., Lesche, M., Hammer, J., Kesavan, G., Beis, D., Guck, J., Brand, M., Wehner, D. (2020) A switch in pdgfrb⁺ cell-derived ECM composition prevents inhibitory scarring and promotes axon regeneration in the zebrafish spinal cord. Developmental Cell. 56(4):509-524.e9

Vivien, C.J., Pichol-Thievend, C., Sim, C.B., Smith, J.B., Bower, N.I., Hogan, B.M., Hudson, J.E., Francois, M., Porrello, E.R. (2019) Vegfc/d-dependent regulation of the lymphatic vasculature during cardiac regeneration is influenced by injury context. NPJ Regenerative medicine. 4:18

Wehner, D., Tsarouchas, T.M., Michael, A., Haase, C., Weidinger, G., Reimer, M.M., Becker, T., Becker, C.G. (2017) Wnt signaling controls pro-regenerative Collagen XII in functional spinal cord regeneration in zebrafish. Nature communications. 8:126

Wood, A.J., Cohen, N., Joshi, V., Li, M., Costin, A., Hersey, L., McKaige, E.A., Manneken, J.D., Sonntag, C., Miles, L.B., Siegel, A., Currie, P.D. (2018) RGD inhibition of itgb1 ameliorates laminin-a2 deficient zebrafish fibre pathology. Human molecular genetics. 28(9):1403-1413

Xie, H., Ye, D., Sepich, D., Lin, F. (2016) S1pr2/Gα13 signaling regulates the migration of endocardial precursors by controlling endoderm convergence. Developmental Biology. 414:228-43

Xue, Q., Varady, S.R.S., Waddell, T.Q.A., Roman, M.R., Carrington, J., Roh-Johnson, M. (2023) Lack of Paxillin phosphorylation promotes single-cell migration in vivo. The Journal of cell biology. 222(3):

Yabe, T., Hoshijima, K., Yamamoto, T., Takada, S. (2016) Mesp quadruple zebrafish mutant reveals different roles of mesp genes in somite segmentation between mouse and zebrafish. Development (Cambridge, England). 143(15):2842-52

Yabe, T., Uriu, K., Takada, S. (2023) Ripply suppresses Tbx6 to induce dynamic-to-static conversion in somite segmentation. Nature communications. 14:2115

Yin, C., Kikuchi, K., Hochgreb, T., Poss, K.D., and Stainier, D.Y. (2010) Hand2 Regulates Extracellular Matrix Remodeling Essential for Gut-Looping Morphogenesis in Zebrafish. Developmental Cell. 18(6):973-984

Additional Citations (1):

ZFIN Staff (2008) Antibody information from supplier. Manually curated data.