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ZFIN ID: ZDB-FIG-150312-37
Junker et al., 2014 - Genome-wide RNA Tomography in the Zebrafish Embryo. Cell   159:662-75 Full text @ Cell
ADDITIONAL FIGURES
EXPRESSION / LABELING:
Genes:
Fish:
Anatomical Terms:
Stage Range: Shield to 14-19 somites

Fig. S7

Identifying Genes Expressed in the Heart and Kupffer’s Vesicle, Related to Figure 7

(A) Additional novel genes with inferred expression patterns similar to gsc at shield stage, and validation by in situ hybridization.

(B) Projection images along LR axis for the 8 genes with expression patterns most similar to myl7 at 15 somites stage. All genes have a known role in heart development.

(C) Projections along LR axis for selected genes with expression patterns similar to dand5 at 10 somites stage. capsla, admp and gdf11 have been shown to be expressed in the Kupffer’s vesicle or, more broadly, in the tip of tail. Expression patterns for si:ch211-51a6.2 and sst6 are novel.

Gene Expression Details
Gene Antibody Fish Conditions Stage Anatomy Assay
admp WT standard conditions 10-13 somites tail bud OTHR
arhgef37 WT standard conditions Shield blastoderm ISH
Shield blastoderm OTHR
Shield shield ISH
Shield shield OTHR
atp2a2a WT standard conditions 14-19 somites heart primordium OTHR
capsla WT standard conditions 10-13 somites tail bud OTHR
cmlc1 WT standard conditions 14-19 somites heart primordium OTHR
dand5 WT standard conditions 10-13 somites tail bud OTHR
fhl2a WT standard conditions 14-19 somites heart primordium OTHR
gdf11 WT standard conditions 10-13 somites tail bud OTHR
ism1 WT standard conditions Shield blastoderm ISH
Shield blastoderm OTHR
Shield shield ISH
Shield shield OTHR
magi1b WT standard conditions Shield blastoderm OTHR
Shield blastoderm ISH
myh7 WT standard conditions 14-19 somites heart primordium OTHR
myl7 WT standard conditions 14-19 somites heart primordium OTHR
sall3b WT standard conditions Shield blastoderm ISH
Shield blastoderm OTHR
Shield shield OTHR
Shield shield ISH
si:ch211-51a6.2 WT standard conditions 10-13 somites tail bud OTHR
si:dkey-13n23.3 WT standard conditions Shield blastoderm ISH
Shield blastoderm OTHR
sst6 WT standard conditions 10-13 somites tail bud OTHR
sulf1 WT standard conditions Shield blastoderm OTHR
Shield blastoderm ISH
tbx20 WT standard conditions 14-19 somites heart primordium OTHR
tnnc1a WT standard conditions 14-19 somites heart primordium OTHR
tnni1b WT standard conditions 14-19 somites heart primordium OTHR
tnnt2a WT standard conditions 14-19 somites heart primordium OTHR
Antibody Labeling Details No data available
Phenotype Details No data available
Acknowledgments:
ZFIN wishes to thank the journal Cell for permission to reproduce figures from this article. Please note that this material may be protected by copyright.

Reprinted from Cell, 159, Junker, J.P., Noël, E.S., Guryev, V., Peterson, K.A., Shah, G., Huisken, J., McMahon, A.P., Berezikov, E., Bakkers, J., van Oudenaarden, A., Genome-wide RNA Tomography in the Zebrafish Embryo, 662-75, Copyright (2014) with permission from Elsevier. Full text @ Cell