ZFIN

ZFIN ID: ZDB-GENE-031202-2

ZFIN ID: ZDB-GENE-031202-2

CITATIONS (170 total)

Gene Name:	matrix metallopeptidase 13a, tandem duplicate 1
Gene Symbol:	mmp13a.1

Kayman Kürekçi, G., Kaur Bajwa, G., Zhang, S., Leclerc, S., de Chantal, E., Belke, D., Andelfinger, G., Deniset, J.F., Marín-Juez, R. (2026) Attenuation of epicardial activation and myofibroblast abundance via the Fbln2-Nupr1b axis stimulates cardiac regeneration in zebrafish. Nature cardiovascular research. 5:218-233

Cheng, Y., Ang, B., Ma, D., Li, Z., Guo, F., Wang, Z., Chen, Q., Zeng, M., Chen, J., Adhikari, B., Yin, L., Wang, T., Zheng, Z., He, Z. (2025) Transcriptomic and Weighted Gene Coexpression Network Analyses Reveal Superior Multitarget Mechanisms of Dihydroquercetin Derivatives over Dihydroquercetin in Alleviating Energy Metabolism and Neurological Disorders in Diabetic Zebrafish. Journal of Agricultural and Food Chemistry. 73:14376-14392

Flatman, D., Naylor, R.W., Crilly, S., Carter, I., Mironov, A., Pinteaux, E., Allan, S.M., Lennon, R., Kasher, P.R. (2025) Loss of col4a1 in zebrafish recapitulates the cerebrovascular phenotypes associated with monogenic cerebral small vessel disease. Matrix biology : journal of the International Society for Matrix Biology. 141:32-46

Kong, W., Jiang, P., Miao, X., Sang, B., Hu, S., Feng, L. (2025) The Role of Atp2a2-Mediated Calcium Imbalance and Endoplasmic Reticulum Stress in Hydrocortisone-Induced Neurotoxicity. Cell stress & chaperones. :100112

Ravishankar, S., Tuohey, S.M., Ramos, N.O., Uchiyama, S., Hayes, M.I., Kang, K., Nizet, V., Madigan, C.A. (2025) Group B Streptococci lyse endothelial cells to infect the brain in a zebrafish meningitis model. PLoS Biology. 23:e3003236

Varela, T., Varela, D., Conceição, N., Cancela, M.L. (2025) Transcriptomic Profiling of Zebrafish Mutant for cdkl5 Reveals Dysregulated Gene Expression Associated with Neuronal, Muscle, Visual and Skeletal Development. International Journal of Molecular Sciences. 26:

Yousaf, H., de Koning, M.A., Khan, K., Gilmore, K.L., Hoffer, M.J.V., Kellaris, G., Lanone, S., Dagouassat, M., Ullah, F., Adama van Scheltema, P.N., Heron, D., Capri, Y., Kuechler, A., Schweiger, B., Haak, M.C., Keren, B., Tran Mau Them, F., Peeters-Scholte, C.M.P.C.D., Kaiser, F.J., Koopmann, T.T., Mei, H., Yalcin, B., Depienne, C., Vora, N.L., Santen, G.W.E., Davis, E.E. (2025) Bi-allelic deleterious variants in SNAPIN, which encodes a retrograde dynein adaptor, cause a prenatal-onset neurodevelopmental disorder. American journal of human genetics. 112:2402-2421

Yuan, Y., Dyer, C., Knight, R.D. (2025) Muscle Regeneration Can Be Rescued in a Telomerase Deficient Zebrafish Model of Ageing by MMP Inhibition. Aging Cell. :e70238

Zhang, Y., Wei, X., Sheng, R., Yang, G., Han, X., Wang, J., Liu, C., Li, S., Lei, L., Jiang, W., Lun, Y., Si, S., Zhang, J., Xu, Y. (2025) A Novel RANKL/RANK Inhibitor IMB-R38 Inhibits Osteoporosis Through Regulating Bone Metabolism. International Journal of Molecular Sciences. 26:

Zhao, Y., Mei, X., Yang, J., Wang, Z., Liu, Q., Zhang, Y., Yang, D. (2025) β-Glucan pretreatment activates lectin pathway to maintain the function of intestinal Th17 cells for infectious enteritis protection. Zoological research. 46:141114241411-1424

Dennhag, N., Kahsay, A., Nissen, I., Nord, H., Chermenina, M., Liu, J., Arner, A., Liu, J.X., Backman, L.J., Remeseiro, S., von Hofsten, J., Pedrosa Domellöf, F. (2024) fhl2b mediates extraocular muscle protection in zebrafish models of muscular dystrophies and its ectopic expression ameliorates affected body muscles. Nature communications. 15:1950

Gimenez, G., Kalev-Zylinska, M.L., Morison, I., Bohlander, S.K., Horsfield, J.A., Antony, J. (2024) Cohesin rad21 mutation dysregulates erythropoiesis and granulopoiesis output within the whole kidney marrow of adult zebrafish. American journal of physiology. Cell physiology. 328(1):C9-C19

Huttunen, R., Haapanen-Saaristo, A.M., Hjelt, A., Jokilammi, A., Paatero, I., Järveläinen, H. (2024) Empagliflozin attenuates hypoxia-induced heart failure of zebrafish embryos via influencing MMP13 expression. Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie. 180:117453

Jiang, R.X., Hu, N., Deng, Y.W., Hu, L.W., Gu, H., Luo, N., Wen, J., Jiang, X.Q. (2024) Potential therapeutic role of spermine via Rac1 in osteoporosis: Insights from zebrafish and mice. Zoological research. 45:367380367-380

Ulhaq, Z.S., Ogino, Y., Tse, W.K.F. (2024) Transcriptome alterations in sf3b4-depleted zebrafish: Insights into cataract formation in retinitis pigmentosa model. Experimental Eye Research. 240:109819

Chang, S.H., Giong, H.K., Kim, D.Y., Kim, S., Oh, S., Yun, U.J., Lee, J.S., Park, K.W. (2023) Activation of Nrf2 by sulfuretin stimulates chondrocyte differentiation and increases bone lengths in zebrafish. BMB reports. 56:496501496-501

García-López, J.P., Grimaldi, A., Chen, Z., Meneses, C., Bravo-Tello, K., Bresciani, E., Banderas, A., Burgess, S.M., Hernández, P.P., Feijoo, C.G. (2023) Ontogenetically distinct neutrophils differ in function and transcriptional profile in zebrafish. Nature communications. 14:4942

Guo, W., Jin, P., Li, R., Huang, L., Liu, Z., Li, H., Zhou, T., Fang, B., Xia, L. (2023) Dynamic network biomarker identifies cdkn1a-mediated bone mineralization in the triggering phase of osteoporosis. Experimental & molecular medicine. 55(1):81-94

Lv, H., Jin, Z., Wang, D., Guo, X., Wang, H., Yang, S. (2023) Erk5 functions in modulation of zebrafish intestinal permeability. Cell and tissue research. 393(2):281-296

Seda, M., Crespo, B., Corcelli, M., Osborn, D.P., Jenkins, D. (2023) A CRISPR/Cas9-generated mutation in the zebrafish orthologue of PPP2R3B causes idiopathic scoliosis. Scientific Reports. 13:6783

Singh Angom, R., Wang, Y., Wang, E., Dutta, S., Mukhopadhyay, D. (2023) Conditional, Tissue-Specific CRISPR/Cas9 Vector System in Zebrafish Reveals the Role of Nrp1b in Heart Regeneration. Arteriosclerosis, Thrombosis, and Vascular Biology. 43(10):1921-1934

Banu, S., Gaur, N., Nair, S., Ravikrishnan, T., Khan, S., Mani, S., Bharathi, S., Mandal, K., Kuram, N.A., Vuppaladadium, S., Ravi, R., Murthy, C.L.N., Quoseena, M., Babu, N.S., Idris, M.M. (2022) Transcriptomic and proteomic analysis of epimorphic regeneration in zebrafish caudal fin tissue. Genomics. 114(2):110300

Cadiz Diaz, A., Schmidt, N.A., Yamazaki, M., Hsieh, C.J., Lisse, T.S., Rieger, S. (2022) Coordinated NADPH oxidase/hydrogen peroxide functions regulate cutaneous sensory axon de- and regeneration. Proceedings of the National Academy of Sciences of the United States of America. 119:e2115009119

Chen, K., Wang, P., Chen, J., Ying, Y., Chen, Y., Gilson, E., Lu, Y., Ye, J. (2022) Loss of atm in Zebrafish as a Model of Ataxia-Telangiectasia Syndrome. Biomedicines. 10(2):

Edirisinghe, S.L., Nikapitiya, C., Dananjaya, S.H.S., Park, J., Kim, D., Choi, D., De Zoysa, M. (2022) Effect of Polydeoxyribonucleotide (PDRN) Treatment on Corneal Wound Healing in Zebrafish (Danio rerio). International Journal of Molecular Sciences. 23(21):

Ellis, J.L., Evason, K.J., Zhang, C., Fourman, M.N., Liu, J., Ninov, N., Delous, M., Vanhollebeke, B., Fiddes, I., Otis, J.P., Houvras, Y., Farber, S.A., Xu, X., Lin, X., Stainier, D.Y.R., Yin, C. (2022) A missense mutation in the proprotein convertase gene furinb causes hepatic cystogenesis during liver development in zebrafish. Hepatology communications. 6(11):3083-3097

Khrystoforova, I., Shochat-Carvalho, C., Harari, R., Henke, K., Woronowicz, K., Harris, M.P., Karasik, D. (2022) Zebrafish mutants reveal unexpected role of Lrp5 in osteoclast regulation. Frontiers in endocrinology. 13:985304

Lin, C., Tang, Y., Wang, Y., Zhang, J., Li, Y., Xu, S., Xia, B., Zhai, Q., Li, Y., Zhang, L., Liu, J. (2022) WhiB4 Is Required for the Reactivation of Persistent Infection of Mycobacterium marinum in Zebrafish. Microbiology spectrum. 10(2):e0044321

Ma, J., Shao, X., Geng, F., Liang, S., Yu, C., Zhang, R. (2022) Ercc2/Xpd deficiency results in failure of digestive organ growth in zebrafish with elevated nucleolar stress. iScience. 25:104957

Norcross, R.G., Abdelmoti, L., Rouchka, E.C., Andreeva, K., Tussey, O., Landestoy, D., Galperin, E. (2022) Shoc2 controls ERK1/2-driven neural crest development by balancing components of the extracellular matrix. Developmental Biology. 492:156-171

Peng, C.H., Lin, W.Y., Li, C.Y., Dharini, K.K., Chang, C.Y., Hong, J.T., Lin, M.D. (2022) Gu Sui Bu (Drynaria fortunei J. Sm.) antagonizes glucocorticoid-induced mineralization reduction in zebrafish larvae by modulating the activity of osteoblasts and osteoclasts. Journal of ethnopharmacology. 297:115565

Rolland, L., Harrington, A., Faucherre, A., Abaroa, J.M., Gangatharan, G., Gamba, L., Severac, D., Pratlong, M., Moore-Morris, T., Jopling, C. (2022) The regenerative response of cardiac interstitial cells. Journal of molecular cell biology. 14(10):

Sarmah, S., Hawkins, M.R., Manikandan, P., Farrell, M., Marrs, J.A. (2022) Elf3 deficiency during zebrafish development alters extracellular matrix organization and disrupts tissue morphogenesis. PLoS One. 17:e0276255

Gulluni, F., Prever, L., Li, H., Krafcikova, P., Corrado, I., Lo, W.T., Margaria, J.P., Chen, A., De Santis, M.C., Cnudde, S.J., Fogerty, J., Yuan, A., Massarotti, A., Sarijalo, N.T., Vadas, O., Williams, R.L., Thelen, M., Powell, D.R., Schueler, M., Wiesener, M.S., Balla, T., Baris, H.N., Tiosano, D., McDermott, B.M., Perkins, B.D., Ghigo, A., Martini, M., Haucke, V., Boura, E., Merlo, G.R., Buchner, D.A., Hirsch, E. (2021) PI(3,4)P2-mediated cytokinetic abscission prevents early senescence and cataract formation. Science (New York, N.Y.). 374:eabk0410

Klaver, E.J., Dukes-Rimsky, L., Kumar, B., Xia, Z.J., Dang, T., Lehrman, M.A., Angel, P., Drake, R.R., Freeze, H.H., Steet, R., Flanagan-Steet, H. (2021) Protease-dependent defects in N-cadherin processing drive PMM2-CDG pathogenesis. JCI insight. 6(24):

Pharkjaksu, S., Boonmee, N., Mitrpant, C., Ngamskulrungroj, P. (2021) Immunopathogenesis of Emerging Candida auris and Candida haemulonii Strains. Journal of fungi (Basel, Switzerland). 7(9):

Ratnayake, D., Nguyen, P.D., Rossello, F.J., Wimmer, V.C., Tan, J.L., Galvis, L.A., Julier, Z., Wood, A.J., Boudier, T., Isiaku, A.I., Berger, S., Oorschot, V., Sonntag, C., Rogers, K.L., Marcelle, C., Lieschke, G.J., Martino, M.M., Bakkers, J., Currie, P.D. (2021) Macrophages provide a transient muscle stem cell niche via NAMPT secretion. Nature. 591(7849):281-287

Wurster, S., Ruiz, O.E., Samms, K.M., Tatara, A.M., Albert, N.D., Kahan, P.H., Nguyen, A.T., Mikos, A.G., Kontoyiannis, D.P., Eisenhoffer, G.T. (2021) EGF-mediated suppression of cell extrusion during mucosal damage attenuates opportunistic fungal invasion. Cell Reports. 34:108896

Xia, J., Kang, Z., Xue, Y., Ding, Y., Gao, S., Zhang, Y., Lv, P., Wang, X., Ma, D., Wang, L., Han, J.J., Liu, F. (2021) A single-cell resolution developmental atlas of hematopoietic stem and progenitor cell expansion in zebrafish. Proceedings of the National Academy of Sciences of the United States of America. 118(14):

Chen, P.Y., Tsai, Y.W., Yw Chang, A., Hua Chang, H., Hsiao, Y.H., Huang, C.W., Sung, P.S., Chen, B.H., Fu, T.F. (2020) Increased leptin-b expression and metalloprotease expression contributed to the pyridoxine-associated toxicity in zebrafish larvae displaying seizure-like behavior. Biochemical pharmacology. 182:114294

Chen, R.Y., Lin, C.J., Liang, S.T., Villalobos, O., Villaflores, O.B., Lou, B., Lai, Y.H., Hsiao, C.D. (2020) UVB Irradiation Induced Cell Damage and Early Onset of Junbb Expression in Zebrafish. Animals : an open access journal from MDPI. 10(6):

Chen, Y., Li, J., Zhou, Q., Liu, Z., Li, Q. (2020) Hexavalent chromium amplifies the developmental toxicity of graphene oxide during zebrafish embryogenesis. Ecotoxicology and environmental safety. 208:111487

Edirisinghe, S.L., Rajapaksha, D.C., Nikapitiya, C., Oh, C., Lee, K.A., Kang, D.H., De Zoysa, M. (2020) Spirulina maxima derived marine pectin promotes the in vitro and in vivo regeneration and wound healing in zebrafish. Fish & shellfish immunology. 107(Pt A):414-425

He, M., Halima, M., Xie, Y., Schaaf, M.J.M., Meijer, A.H., Wang, M. (2020) Ginsenoside Rg1 Acts as a Selective Glucocorticoid Receptor Agonist with Anti-Inflammatory Action without Affecting Tissue Regeneration in Zebrafish Larvae. Cells. 9(5):

Hou, Y., Lee, H.J., Chen, Y., Ge, J., Osman, F.O.I., McAdow, A.R., Mokalled, M.H., Johnson, S.L., Zhao, G., Wang, T. (2020) Cellular diversity of the regenerating caudal fin. Science advances. 6:eaba2084

Jiang, Y., Lu, Y., Jiang, X., Hu, J., Li, R., Liu, Y., Zhu, G., Rong, X. (2020) Glucocorticoids induce osteoporosis mediated by glucocorticoid receptor-dependent and -independent pathways. Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie. 125:109979

Liu, Y.Y., Wu, J.Q., Fan, R.Y., He, Z.H., Li, C.Y., He, M.F. (2020) Isoliquiritin promote angiogenesis by recruiting macrophages to improve the healing of zebrafish wounds. Fish & shellfish immunology. 100:238-245

Rajapaksha, D.C., Edirisinghe, S.L., Nikapitiya, C., Dananjaya, S., Kwun, H.J., Kim, C.H., Oh, C., Kang, D.H., De Zoysa, M. (2020) Spirulina maxima Derived Pectin Nanoparticles Enhance the Immunomodulation, Stress Tolerance, and Wound Healing in Zebrafish. Marine drugs. 18(11):

Schmid, S., Willi, R.A., Fent, K. (2020) Effects of environmental steroid mixtures are regulated by individual steroid receptor signaling. Aquatic toxicology (Amsterdam, Netherlands). 226:105562

Small, C.D., El-Khoury, M., Deslongchamps, G., Benfey, T.J., Crawford, B.D. (2020) Matrix Metalloproteinase 13 Activity is Required for Normal and Hypoxia-Induced Precocious Hatching in Zebrafish Embryos. Journal of developmental biology. 8(1):

Zampieri, R.M., Adessi, A., Caldara, F., Codato, A., Furlan, M., Rampazzo, C., De Philippis, R., La Rocca, N., Dalla Valle, L. (2020) Anti-Inflammatory Activity of Exopolysaccharides from Phormidium sp. ETS05, the Most Abundant Cyanobacterium of the Therapeutic Euganean Thermal Muds, Using the Zebrafish Model. Biomolecules. 10(4):

Bise, T., de Preux Charles, A.S., Jaźwińska, A. (2019) Ciliary neurotrophic factor stimulates cardioprotection and the proliferative activity in the adult zebrafish heart. NPJ Regenerative medicine. 4:2

Chestnut, B., Sumanas, S. (2019) Zebrafish etv2 knock-in line labels vascular endothelial and blood progenitor cells. Developmental Dynamics : an official publication of the American Association of Anatomists. 249(2):245-261

Espenschied, S.T., Cronan, M.R., Matty, M.A., Mueller, O., Redinbo, M.R., Tobin, D.M., Rawls, J.F. (2019) Epithelial delamination is protective during pharmaceutical-induced enteropathy. Proceedings of the National Academy of Sciences of the United States of America. 116(34):16961-16970

Hodkovicova, N., Sehonova, P., Blahova, J., Faldyna, M., Marsalek, P., Mikula, P., Chloupek, P., Dobsikova, R., Vecerek, V., Vicenova, M., Vosmerova, P., Svobodova, Z. (2019) The effect of the antidepressant venlafaxine on gene expression of biotransformation enzymes in zebrafish (Danio rerio) embryos. Environmental science and pollution research international. 27(2):1686-1696

Levitas-Djerbi, T., Sagi, D., Lebenthal-Loinger, I., Lerer-Goldshtein, T., Appelbaum, L. (2019) Neurotensin Enhances Locomotor Activity and Arousal, and Inhibits Melanin-Concentrating Hormone Signalings. Neuroendocrinology. 110(1-2):35-49

Li, L., Zhang, J., Akimenko, M.A. (2019) Inhibition of mmp13a during zebrafish fin regeneration disrupts fin growth, osteoblasts differentiation and Laminin organization. Developmental Dynamics : an official publication of the American Association of Anatomists. 249(2):187-198

Lin, X., Zhou, Q., Zhao, C., Lin, G., Xu, J., Wen, Z. (2019) An Ectoderm-Derived Myeloid-like Cell Population Functions as Antigen Transporters for Langerhans Cells in Zebrafish Epidermis. Developmental Cell. 49(4):605-617.e5

Liu, J., Wei, T., Wu, X., Zhong, H., Qiu, W., Zheng, Y. (2019) Early exposure to environmental levels of sulfamethoxazole triggers immune and inflammatory response of healthy zebrafish larvae. The Science of the total environment. 703:134724

Rochon, E., Missinato, M.A., Xue, J., Tejero, J., Tsang, M., Gladwin, M.T., Corti, P. (2019) Nitrite improves heart regeneration in zebrafish. Antioxidants & redox signaling. 32(6):363-377

Rougeot, J., Torraca, V., Zakrzewska, A., Kanwal, Z., Jansen, H.J., Sommer, F., Spaink, H.P., Meijer, A.H. (2019) RNAseq Profiling of Leukocyte Populations in Zebrafish Larvae Reveals a cxcl11 Chemokine Gene as a Marker of Macrophage Polarization During Mycobacterial Infection. Frontiers in immunology. 10:832

Schmid, S., Willi, R.A., Salgueiro-González, N., Fent, K. (2019) Effects of new generation progestins, including as mixtures and in combination with other classes of steroid hormones, on zebrafish early life stages. The Science of the total environment. 709:136262

Seda, M., Geerlings, M., Lim, P., Jeyabalan-Srikaran, J., Cichon, A.C., Scambler, P.J., Beales, P.L., Hernandez-Hernandez, V., Stoker, A.W., Jenkins, D. (2019) An FDA-Approved Drug Screen for Compounds Influencing Craniofacial Skeletal Development and Craniosynostosis. Molecular Syndromology. 10:98-114

Singh, A.P., Sosa, M.X., Fang, J., Shanmukhappa, S.K., Hubaud, A., Fawcett, C.H., Molind, G.J., Tsai, T., Capodieci, P., Wetzel, K., Sanchez, E., Wang, G., Coble, M., Tang, W., Cadena, S.M., Fishman, M.C., Glass, D.J. (2019) αKlotho Regulates Age-Associated Vascular Calcification and Lifespan in Zebrafish. Cell Reports. 28:2767-2776.e5

Tan, J., Yang, D., Wang, Z., Zheng, X., Zhang, Y., Liu, Q. (2019) EvpP inhibits neutrophils recruitment via Jnk-caspy inflammasome signaling in vivo. Fish & shellfish immunology. 92:851-860

Willi, R., Castiglioni, S., Salgueiro Gonzalez, N., Furia, N., Mastroianni, S., Faltermann, S., Fent, K. (2019) Physiological and transcriptional effects of mixtures of environmental estrogens, androgens, progestins and glucocorticoids in zebrafish. Environmental science & technology. 54(2):1092-1101

Willi, R.A., Salgueiro-González, N., Carcaiso, G., Fent, K. (2019) Glucocorticoid mixtures of fluticasone propionate, triamcinolone acetonide and clobetasol propionate induce additive effects in zebrafish embryos. Journal of hazardous materials. 374:101-109

Willi, R.A., Salgueiro-González, N., Faltermann, S., Hettich, T., Fent, K. (2019) Environmental glucocorticoids corticosterone, betamethasone and flumethasone induce more potent physiological than transcriptional effects in zebrafish embryos. The Science of the total environment. 672:183-191

Xie, Y., Tolmeijer, S., Oskam, J.M., Tonkens, T., Meijer, A.H., Schaaf, M.J.M. (2019) Glucocorticoids inhibit macrophage differentiation towards a pro-inflammatory phenotype upon wounding without affecting their migration. Disease models & mechanisms. 12(5):

Xu, S., Liu, C., Xie, F., Tian, L., Manno, S.H., Manno, F.A.M., Fallah, S., Pelster, B., Tse, G., Cheng, S.H. (2019) Excessive inflammation impairs heart regeneration in zebrafish breakdance mutant after cryoinjury. Fish & shellfish immunology. 89:117-126

Yang, Y., Li, B., Zhang, X., Zhao, Q., Lou, X. (2019) The zinc finger protein Zfpm1 modulates ventricular trabeculation through Neuregulin-ErbB signalling. Developmental Biology. 446(2):142-150

Danilova, N., Wilkes, M., Bibikova, E., Youn, M.Y., Sakamoto, K.M., Lin, S. (2018) Innate immune system activation in zebrafish and cellular models of Diamond Blackfan Anemia. Scientific Reports. 8:5165

Dong, X., Zhang, Z., Meng, S., Pan, C., Yang, M., Wu, X., Yang, L., Xu, H. (2018) Parental exposure to bisphenol A and its analogs influences zebrafish offspring immunity. The Science of the total environment. 610-611:291-297

Enya, S., Kawakami, K., Suzuki, Y., Kawaoka, S. (2018) A novel zebrafish intestinal tumor model reveals a role for cyp7a1-dependent tumor-liver crosstalk in causing adverse effects on the host.. Disease models & mechanisms. 11(8)

He, H., Wang, C., Tang, Q., Yang, F., Xu, Y. (2018) Possible mechanisms of prednisolone-induced osteoporosis in zebrafish larva. Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie. 101:981-987

Jurynec, M.J., Sawitzke, A.D., Beals, T.C., Redd, M.J., Stevens, J., Otterud, B., Leppert, M.H., Grunwald, D.J. (2018) A hyperactivating proinflammatory RIPK2 allele associated with early-onset osteoarthritis. Human molecular genetics. 27(13):2383-2391

Laizé, V., Gavaia, P.J., Tarasco, M., Viegas, M.N., Caria, J., Luis, N., Cancela, M.L. (2018) Osteotoxicity of 3-methylcholanthrene in fish. Ecotoxicology and environmental safety. 161:721-728

Schepis, A., Barker, A., Srinivasan, Y., Balouch, E., Zheng, Y., Lam, I., Clay, H., Hsiao, C.D., Coughlin, S.R. (2018) Protease signaling regulates apical cell extrusion, cell contacts, and proliferation in epithelia. The Journal of cell biology. 217(3):1097-1112

Tsarouchas, T.M., Wehner, D., Cavone, L., Munir, T., Keatinge, M., Lambertus, M., Underhill, A., Barrett, T., Kassapis, E., Ogryzko, N., Feng, Y., van Ham, T.J., Becker, T., Becker, C.G. (2018) Dynamic control of proinflammatory cytokines Il-1β and Tnf-α by macrophages in zebrafish spinal cord regeneration. Nature communications. 9:4670

Wei, Y., Huang, L., Cao, J., Wang, C., Yan, J. (2018) Dietary Safety Assessment of Flk1-Transgenic Fish. Frontiers in Physiology. 9:8

Wu, X., Shen, W., Zhang, B., Meng, A. (2018) The genetic program of oocytes can be modified in vivo in the zebrafish ovary. Journal of molecular cell biology. 10(6):479-493

Xu, S., Webb, S.E., Lau, T.C.K., Cheng, S.H. (2018) Matrix metalloproteinases (MMPs) mediate leukocyte recruitment during the inflammatory phase of zebrafish heart regeneration. Scientific Reports. 8:7199

Zhang, Q., Ji, C., Ren, J., Zhang, Q., Dong, X., Zu, Y., Jia, L., Li, W. (2018) Differential transcriptome analysis of zebrafish (Danio rerio) larvae challenged by Vibrio parahaemolyticus. Journal of fish diseases. 41(7):1049-1062

Facchinello, N., Skobo, T., Meneghetti, G., Colletti, E., Dinarello, A., Tiso, N., Costa, R., Gioacchini, G., Carnevali, O., Argenton, F., Colombo, L., Dalla Valle, L. (2017) nr3c1 null mutant zebrafish are viable and reveal DNA-binding-independent activities of the glucocorticoid receptor. Scientific Reports. 7:4371

Gamba, L., Amin-Javaheri, A., Kim, J., Warburton, D., Lien, C.L. (2017) Collagenolytic Activity Is Associated with Scar Resolution in Zebrafish Hearts after Cryoinjury. Journal of cardiovascular development and disease. 4(1)

Hausen, J., Otte, J.C., Legradi, J., Yang, L., Strähle, U., Fenske, M., Hecker, M., Tang, S., Hammers-Wirtz, M., Hollert, H., Keiter, S.H., Ottermanns, R. (2017) Fishing for contaminants: identification of three mechanism specific transcriptome signatures using Danio rerio embryos. Environmental science and pollution research international. 25(5):4023-4036

Seo, S.B., Dananjaya, S.H.S., Nikapitiya, C., Park, B.K., Gooneratne, R., Kim, T.Y., Lee, J., Kim, C.H., De Zoysa, M. (2017) Silver nanoparticles enhance wound healing in zebrafish (Danio rerio). Fish & shellfish immunology. 68:536-545

Shin, S., Kulatunga, D.C.M., Dananjaya, S.H.S., Nikapitiya, C., Lee, J., De Zoysa, M. (2017) Saprolegnia parasitica Isolated from Rainbow Trout in Korea: Characterization, Anti-Saprolegnia Activity and Host Pathogen Interaction in Zebrafish Disease Model.. Mycobiology. 45:297-311

Sonnack, L., Klawonn, T., Kriehuber, R., Hollert, H., Schäfers, C., Fenske, M. (2017) Comparative analysis of the transcriptome responses of zebrafish embryos after exposure to low concentrations of cadmium, cobalt and copper. Comparative biochemistry and physiology. Part D, Genomics & proteomics. 25:99-108

Takada, N., Omae, M., Sagawa, F., Chi, N.C., Endo, S., Kozawa, S., Sato, T.N. (2017) Re-evaluating functional landscape of the cardiovascular system during development. Biology Open. 6(11):1756-1770

Waldron, A.L., Schroder, P.A., Bourgon, K.L., Bolduc, J.K., Miller, J.L., Pellegrini, A.D., Dubois, A.L., Blaszkiewicz, M., Townsend, K.L., Rieger, S. (2017) Oxidative stress-dependent MMP-13 activity underlies glucose neurotoxicity. Journal of diabetes and its complications. 32(3):249-257

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Additional Citations (19):

ZFIN Staff (2024) Association of Ensembl transcripts with ZFIN genes. Semi-automated Curation.

ZFIN Staff (2023) Automated Curation of UniProt Database Links. Automated Data Submission.

ZFIN Staff (2019) Semi-automated association of ENSDARG and ENSDART identifiers with ZFIN genes and transcripts. Semi-automated Curation.

ZFIN Staff (2017) Curation of PANTHER Gene IDs. Automated Data Submission.

ZFIN Staff (2017) Curation of Alliance of Genome Resources Database Links. Automated Data Submission.

Busch-Nentwich, E., Kettleborough, R., Dooley, C. M., Scahill, C., Sealy, I., White, R., Herd, C., Mehroke, S., Wali, N., Carruthers, S., Hall, A., Collins, J., Gibbons, R., Pusztai, Z., Clark, R., and Stemple, D.L. (2013) Sanger Institute Zebrafish Mutation Project mutant data submission. ZFIN Direct Data Submission.

ZFIN Staff (2013) Semi-automated association of ENSDARG identifiers with ZFIN genes for the ZMP project. Semi-automated Curation.

Gaudet, P., Livstone, M.S., Lewis, S.E., Thomas, P.D. (2010) Annotation inferences using phylogenetic trees. Automated Data Submission. 12:449-62

ZFIN Staff (2008) Antibody information from supplier. Manually curated data.

ZFIN Staff (2007) Microarray Expression to Gene Association in ZFIN. Semi-automated Curation.

ZFIN Staff (2004) ZGC Data Curation and Association in ZFIN by ZFIN Staff. Semi-automated Curation.

Zebrafish Nomenclature Committee (2003) Nomenclature Data Curation (2003-2010). Nomenclature Committee Submission.

ZFIN Staff (2003) Curation of unpublished nucleotide sequence accession numbers. Manually curated data.

ZFIN Staff (2003) Gene Ontology Annotation Through Association of Enzyme Commission numbers with GO Terms. Automated Data Submission.

ZFIN Staff (2002) Gene Ontology Annotation Through Association of UniProt Keywords with GO Terms. Automated Data Submission.

ZFIN Staff (2002) Curation of NCBI Gene Data Via Shared RNA Sequence IDs. Automated Data Submission.

ZFIN Staff (2002) Scientific Curation. Manually curated data.

ZFIN Staff (2002) Gene Ontology Annotation Through Association of InterPro Records with GO Terms. Automated Data Submission.

Thisse, B., Pflumio, S., Fürthauer, M., Loppin, B., Heyer, V., Degrave, A., Woehl, R., Lux, A., Steffan, T., Charbonnier, X.Q. and Thisse, C. (2001) Expression of the zebrafish genome during embryogenesis (NIH R01 RR15402). ZFIN Direct Data Submission.