Publication	Data		Fish	Anatomy
Rocha et al., 2021	Fig. 3		cdx4ch107/ch107	neural tube dorsal region foxd3 expression decreased amount, abnormal tail bud foxd3 expression decreased amount, abnormal
	Fig. 4		cdx4ch107/ch107	migratory trunk neural crest neural crest cell migration decreased process quality, abnormal trunk neural crest cell ab3-sox10 labeling spatial pattern, abnormal
	Fig. 5		cdx4ch107/ch107; vu234Tg/vu234Tg	neural crest cell migration onset quality, abnormal trunk neural crest cell mRFP expression spatial pattern, abnormal
Tarifeño-Saldivia et al., 2017	Fig. 8		cdx4tv205c/tv205c	endocrine pancreas map3k15 expression decreased amount, abnormal pancreatic B cell increased amount, abnormal pancreatic D cell lamc2 expression absent, abnormal pancreatic D cell map3k15 expression absent, abnormal pancreatic D cell slc7a7 expression absent, abnormal pancreatic D cell sst2 expression absent, abnormal pancreatic D cell differentiation disrupted, abnormal
Qiu et al., 2016	Fig. 3		sd2Tg + MO1-cdx4	blood cell decreased amount, abnormal blood island DsRed expression decreased amount, abnormal hematopoietic cell decreased amount, abnormal
Hayward et al., 2015	Fig. 2		cdx4hi2188aTg/hi2188aTg	hindbrain posterior region hoxb4a expression increased distribution, abnormal hindbrain posterior region hoxb4a expression spatial pattern, abnormal mesoderm posterior region hoxb4a expression increased distribution, abnormal mesoderm posterior region hoxb4a expression spatial pattern, abnormal paraxial mesoderm hoxd4a expression decreased distribution, abnormal paraxial mesoderm hoxd4a expression spatial pattern, abnormal paraxial mesoderm anterior margin hoxa9a expression decreased distribution, abnormal paraxial mesoderm anterior margin hoxa9a expression spatial pattern, abnormal paraxial mesoderm anterior margin hoxb5a expression decreased distribution, abnormal paraxial mesoderm anterior margin hoxb5a expression spatial pattern, abnormal paraxial mesoderm anterior margin hoxb7a expression decreased distribution, abnormal paraxial mesoderm anterior margin hoxb7a expression spatial pattern, abnormal paraxial mesoderm anterior margin hoxb9a expression decreased distribution, abnormal paraxial mesoderm anterior margin hoxb9a expression spatial pattern, abnormal paraxial mesoderm anterior margin hoxd12a expression decreased distribution, abnormal paraxial mesoderm anterior margin hoxd12a expression spatial pattern, abnormal paraxial mesoderm anterior margin hoxd4a expression decreased distribution, abnormal paraxial mesoderm anterior margin hoxd4a expression spatial pattern, abnormal spinal cord neural tube anterior margin hoxa9a expression spatial pattern, abnormal spinal cord neural tube anterior margin hoxb5a expression decreased distribution, abnormal spinal cord neural tube anterior margin hoxb5a expression spatial pattern, abnormal spinal cord neural tube anterior margin hoxb7a expression decreased distribution, abnormal spinal cord neural tube anterior margin hoxb7a expression spatial pattern, abnormal spinal cord neural tube anterior margin hoxb9a expression decreased distribution, abnormal spinal cord neural tube anterior margin hoxb9a expression spatial pattern, abnormal spinal cord neural tube anterior margin hoxd13a expression decreased distribution, abnormal spinal cord neural tube anterior margin hoxd13a expression spatial pattern, abnormal tail bud hoxb4a expression increased amount, abnormal tail bud hoxd13a expression decreased amount, abnormal tail bud hoxd4a expression decreased amount, abnormal
	Fig. 5		cdx4tv205c/tv205c	margin hoxc4a expression absent, abnormal margin hoxc6a expression absent, abnormal margin hoxc8a expression absent, abnormal
	Fig. 6		cdx4tv205c/tv205c	neuroectoderm anterior margin hoxc10a expression decreased distribution, abnormal neuroectoderm anterior margin hoxc10a expression spatial pattern, abnormal neuroectoderm anterior margin hoxc6a expression decreased distribution, abnormal neuroectoderm anterior margin hoxc6a expression spatial pattern, abnormal neuroectoderm anterior margin hoxc6b expression decreased distribution, abnormal neuroectoderm anterior margin hoxc6b expression spatial pattern, abnormal neuroectoderm anterior margin hoxc8a expression decreased distribution, abnormal neuroectoderm anterior margin hoxc8a expression spatial pattern, abnormal
Paik et al., 2013	Fig. 3		cdx4tv205c/tv205c	nucleate erythrocyte decreased amount, abnormal
Lengerke et al., 2011	Fig. 5		cdx4tv205c/tv205c (TU)	intermediate mesoderm pax2a expression decreased amount, abnormal intermediate mesoderm pax2a expression mislocalised, abnormal lateral plate mesoderm tbx5a expression increased distribution, abnormal
Ro et al., 2011	Fig. 2		WT + MO1-cdx4	post-vent region decreased length, abnormal post-vent region kinked, abnormal
Hart et al., 2009	Fig. 1		WT + MO3-cdx4	embryo development decreased rate, abnormal post-vent region deformed, abnormal
Kinkel et al., 2008	Fig. 2		cdx4hi2188aTg/hi2188aTg	anterior/posterior pattern specification disrupted, abnormal endocrine pancreas mislocalised posteriorly, abnormal exocrine pancreas mislocalised posteriorly, abnormal liver mislocalised posteriorly, abnormal
	Fig. 3		cdx4hi2188aTg/hi2188aTg ,   cdx4hi2188aTg/+	cell migration disrupted, abnormal neural crest cell mislocalised posteriorly, abnormal pancreas mislocalised posteriorly, abnormal pancreas primordium mislocalised posteriorly, abnormal pancreatic bud mislocalised posteriorly, abnormal
	Fig. 4		cdx4hi2188aTg/hi2188aTg ,   cdx4hi2188aTg/+	anterior/posterior pattern specification disrupted, abnormal cell migration delayed, abnormal pancreas development disrupted, abnormal pancreatic B cell increased amount, abnormal
	Fig. S2		cdx4hi2188aTg/hi2188aTg	anterior/posterior pattern specification disrupted, abnormal foregut morphogenesis disrupted, abnormal
Muncan et al., 2007	Fig. 5		cdx4tv205c/tv205c	intestine morphology, abnormal
Skromne et al., 2007	Fig. 1		WT + MO1-cdx4	hindbrain increased length, abnormal hindbrain-spinal cord boundary formation disrupted, abnormal spinal cord decreased length, abnormal
Wingert et al., 2007	Fig. 5		cdx4tv205c/tv205c (TU)	corpuscles of Stannius decreased size, abnormal corpuscles of Stannius mislocalised posteriorly, abnormal podocyte mislocalised posteriorly, abnormal posterior pronephric duct decreased length, abnormal pronephric distal early tubule decreased length, abnormal pronephric distal late tubule decreased length, abnormal pronephric proximal convoluted tubule increased length, abnormal pronephric proximal straight tubule decreased length, abnormal trunk mesenchyme distended, abnormal
	Fig. 7		cdx4tv205c/tv205c (TU)	corpuscles of Stannius mislocalised posteriorly, abnormal posterior pronephric duct decreased length, abnormal pronephric distal early tubule decreased length, abnormal pronephric distal late tubule decreased length, abnormal pronephric proximal convoluted tubule increased length, abnormal
Phenotype Annotation (1994-2006)	Fig. for (hi2092)		cdx4hi2092Tg	anatomical system quality, abnormal pronephros quality, abnormal whole organism decreased length, abnormal whole organism shape, abnormal
	Fig. for (hi2188a)		cdx4hi2188aTg	pronephros quality, abnormal whole organism decreased length, abnormal
	Fig. for (hi2617)		cdx4hi2617Tg	pronephros quality, abnormal whole organism decreased length, abnormal
	Fig. for (tl240a)		cdx4tl240a/tl240a	musculoskeletal movement disrupted, abnormal post-vent region quality, abnormal whole organism lethal (sensu genetics), abnormal whole organism shape, abnormal
	Fig. for (tv205c)		cdx4tv205c/tv205c	post-vent region quality, abnormal whole organism lethal (sensu genetics), abnormal
Shimizu et al., 2005	Fig. Table 2		WT + MO1-cdx4	post-vent region decreased size, abnormal post-vent region has fewer parts of type somite, abnormal post-vent region truncated, abnormal
Amsterdam et al., 2004	text only		cdx4hi2092Tg/hi2092Tg	post-vent region truncated, abnormal pronephros cystic, abnormal trunk decreased length, abnormal
Golling et al., 2002	Fig. 1		cdx4hi2092Tg/hi2092Tg	extension aplastic, abnormal whole organism decreased length, abnormal
	Fig. 2		cdx4hi2092Tg/hi2092Tg	post-vent region decreased length, abnormal
Hammerschmidt et al., 1996	Fig. 5		cdx4tl240a/tl240a	ball constricted, abnormal convergent extension involved in axis elongation disrupted, abnormal extension aplastic, abnormal somite condensed, abnormal whole organism decreased length, abnormal whole organism spherical, abnormal
	text only		cdx4tv205c/tv205c	convergent extension involved in axis elongation disrupted, abnormal extension aplastic, abnormal post-vent region morphology, abnormal whole organism decreased length, abnormal whole organism viability, abnormal