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ZIRC
ZFIN ID: ZDB-GENE-980526-330
Gene Name: caudal type homeobox 4
Gene Symbol: cdx4    Nomenclature History

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Previous Names: cdx1 (1), cad1, caudal homeobox 1 (1), caudal, cb546 (1), CHUNP6923, id:ibd1215, id:ibd2812, id:ibd5107, kgg, kugelig, zf-cad1 (1), zfcad1

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 14 Mapping Details/Browsers
Description: Exhibits DNA binding activity and chromatin binding activity. Involved in several processes, including animal organ development; anterior/posterior pattern specification; and embryonic foregut morphogenesis. Predicted to localize to the nucleus. Is expressed in several structures, including digestive system; endoderm; germ ring; mesoderm; and presumptive mesoderm. Orthologous to human CDX4 (caudal type homeobox 4).
Genome Resources: Alliance (1),  Gene:798281 (1),  Ensembl(GRCz11):ENSDARG00000036292 (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
hi2092Tg Transgenic Insertion Intron 1 Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • hi2188aTg Transgenic Insertion Intron 1 Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • hi2617Tg Transgenic Insertion Unknown Unknown DNA
    tl240a Point Mutation Unknown Missense ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • tv205c Small Deletion Unknown Unknown ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    MO1-cdx4 N/A 10
    MO2-cdx4 N/A 1
    MO3-cdx4 N/A 1
    DISEASE ASSOCIATED WITH cdx4 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH cdx4 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process anterior/posterior axis specification (more)
    Cellular Component nucleus (more)
    Molecular Function chromatin binding (more)
    GO Terms (all 24)
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA cdx4-201 (1)    Ensembl 1638
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM cdx4
    Construct Regulatory Regions Coding Sequences Species Tg Lines Publications
    Tg(cdx4:EGFP) cdx4 EGFP Danio rerio 1 4
    Tg(hsp70l:cdx4) hsp70l cdx4 Danio rerio 1 2
    MARKER RELATIONSHIPS
    cdx4 Contained in: [BAC] CH211-231B5 (1) (order this), CH211-276G21 (1) (order this)
    cdx4 Encodes: [BAC END] zk14a10.t7
    [EST] cb546 (1) (order this), ibd1215 (1) (order this), ibd2812 (order this), ibd5107 (1) (order this)
    [cDNA] MGC:91785 (1) (order this), MGC:174156 (1) (order this), MGC:174157 (1) (order this), MGC:191602 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_131109 (1) 1587 bp
    Genomic GenBank:AL935131 (1) 170938 bp
    Select Tool
    Polypeptide UniProtKB:Q90262 (1) 300 aa
    Sequence Clusters UniGene:11836 (1)
    Sequence Information (all 35)
    ORTHOLOGY for cdx4 ( Chr: 14 )
    CITATIONS (126)