ZFIN ID: ZDB-GENE-990415-271

Mapping Details

Gene Name: rhodopsin
Symbol: rho
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN 8 64,439,534 - 64,441,082 GRCz12tu
NCBI Map Viewer 8 64,439,534 - 64,441,082 GRCz12tu
Ensembl 8 54,076,195 - 54,077,740 GRCz11
NCBI Map Viewer 8 54,076,192 - 54,077,740 GRCz11
UCSC 8 - GRCz11
Vega 8 53,668,767 - 53,670,321 GRCv10
Mapped Clones containing rho
CH1073-274H22 Chr: 8 Details
CH1073-268B21 Chr: 8 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Source DetailedSource Citations
djh503 8 54,076,688 - 54,076,692 GRCz11 DIRECT Unal Eroglu et al., 2018
fl6 8 54,077,607 GRCz11 DIRECT Zelinka et al., 2018
fl7 8 54,077,605 - 54,077,610 GRCz11 DIRECT Zelinka et al., 2018
fl8 8 54,076,639 - 54,076,644 GRCz11 DIRECT Zelinka et al., 2018
fl9 8 54,076,593 - 54,076,616 GRCz11 DIRECT Zelinka et al., 2018
fl10 8 54,077,607 - 54,077,609 GRCz11 DIRECT Zelinka et al., 2018
ouc2003 8 54,076,709 - 54,076,713 GRCz11 DIRECT Feng et al., 2017
sa21401 8 64,440,802 GRCz12tu DIRECT Sealy et al., 2025
8 54,077,460 GRCz11 DIRECT Busch-Nentwich et al., 2013
8 53,670,035 GRCz10 DIRECT Busch-Nentwich et al., 2013
8 55,708,150 Zv9 DIRECT Busch-Nentwich et al., 2013
sa31692 8 64,440,203 GRCz12tu DIRECT Sealy et al., 2025
8 54,076,861 GRCz11 DIRECT Busch-Nentwich et al., 2013
8 53,669,436 GRCz10 DIRECT Busch-Nentwich et al., 2013
8 55,707,551 Zv9 DIRECT Busch-Nentwich et al., 2013
djh503 8 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
8 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
8 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
8 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
fl6 8 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
8 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
8 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
8 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
fl7 8 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
8 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
8 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
8 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
fl8 8 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
8 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
8 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
8 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
fl9 8 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
8 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
8 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
8 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
fl10 8 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
8 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
8 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
8 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
ouc2003 8 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
8 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
8 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
8 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
sa21401 8 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
8 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
8 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
8 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
sa31692 8 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
8 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
8 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
8 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage

GENETIC MAPPING PANELS
Chr Location Mapped As Panel Mapped By Scoring
8 5923.0 cR rho Goodfellow T51 (T51) Geisler, Robert Data
8 137.4 cM rho Heat Shock (HS) Woods, Ian G. Data
8 107.43 cM rho Gates et al (GAT) Talbot, William S. Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.
MAPPING FROM PUBLICATIONS
Marker Type Chr Distance Publication / Person Comments
z53435 SSLP 8 Torres-Vazquez et al., 2004 In Torres-Vazquez et al. 2004, obd was mapped to LG8 near brpf1, rho/z9637 and  ...
z9637 SSLP 8 Torres-Vazquez et al., 2004 In Torres-Vazquez et al. 2004, obd was mapped to LG8 near brpf1, rho/z9637 and  ...
brpf1 GENE 8 Torres-Vazquez et al., 2004 In Torres-Vazquez et al. 2004, obd was mapped to LG8 near brpf1, rho/z9637 and  ...
Df(Chr08:plxnd1)fs31l Feature 8 Torres-Vazquez et al., 2004 In Torres-Vazquez et al. 2004, obd was mapped to LG8 near brpf1, rho/z9637 and  ...
plxnd1 GENE 8 Torres-Vazquez et al., 2004 In Torres-Vazquez et al. 2004, obd was mapped to LG8 near brpf1, rho/z9637 and  ...

OTHER MAPPING INFORMATION
Chr 8 Torres-Vazquez et al., 2004 In Torres-Vazquez et al. 2004, obd was mapped to LG8 near brpf1, rho/z9637 and z53435. At the time  ...
Markers Encoded by rho
fi06d11 Chr: 8 Details