Publication	Data		Fish	Anatomy
Hawkey-Noble et al., 2022	Figure 4		foxc1aua1017/ua1017 (AB)	opercular flap ossification decreased process quality, abnormal pharyngeal arch 1 ossification decreased process quality, abnormal pharyngeal arch 2 ossification decreased process quality, abnormal
	Figure 6		foxc1aua1017/ua1017 (AB)	vertebra ossification absent process, abnormal
	Figure 7		foxc1aua1017/ua1017 (AB)	whole organism col11a2 expression decreased amount, abnormal whole organism col1a1a expression decreased amount, abnormal whole organism hpxa expression decreased amount, abnormal whole organism matn1 expression decreased amount, abnormal
Chrystal et al., 2021	Figure 2		foxc1aua1017/ua1017 (AB)	brain hemorrhagic, abnormal eye decreased size, abnormal head deformed, abnormal pericardium edematous, abnormal
	Figure 3		foxc1aua1017/ua1017 (AB)	determination of heart left/right asymmetry disrupted, abnormal heart myl7 expression spatial pattern, abnormal
	Figure 6		foxc1aua1017/ua1017 (AB)	lateral plate mesoderm lft2 expression spatial pattern, abnormal
He et al., 2021	Fig. 1		foxc1anju18/nju18; zf3348Tg ,   foxc1anju18/nju18; f1Tg	cardiac ventricle cell proliferation involved in heart morphogenesis decreased process quality, abnormal cardiac ventricle has fewer parts of type cardiac muscle cell, abnormal cardiac ventricle ventricular trabecula myocardium morphogenesis decreased process quality, abnormal trabecular layer of ventricle smooth, abnormal
	Fig. 3		foxc1anju18/nju18	heart epas1b expression decreased amount, abnormal heart fezf2 expression increased amount, abnormal heart mecom expression decreased amount, abnormal heart neurod1 expression decreased amount, abnormal heart pkd2 expression decreased amount, abnormal heart wwtr1 expression decreased amount, abnormal
	Fig. 5		foxc1anju18/nju18 ,   foxc1anju18/nju18; f1Tg	heart contraction decreased spatial extent of a process, abnormal heart edematous, abnormal
	Fig. S4		foxc1anju18/nju18	heart nkx2.5 expression decreased amount, abnormal
Ferre-Fernández et al., 2020	Fig. 1		foxc1amw711/mw711	anterior segment eye lacks all parts of type anterior chamber eye, abnormal camera-type eye morphogenesis decreased process quality, abnormal caudal vein edematous, abnormal eye decreased size, abnormal eye malformed, abnormal heart edematous, abnormal
	Fig. 3		foxc1amw711/mw711; y1Tg	brain vasculature lacks all parts of type central artery, abnormal ocular blood vessel malformed, abnormal retina vasculature development in camera-type eye decreased process quality, abnormal
	Fig. 4		foxc1amw711/+	eye foxc1a expression increased amount, abnormal eye pitx2 expression decreased amount, abnormal eye pitx2 expression increased amount, abnormal
Shin et al., 2019	Fig. 7		foxc1ap162/p162; la3Tg/+; nz101Tg/+	lymph vessel endothelial cell EGFP expression absent, abnormal
Whitesell et al., 2019	Fig. 8		foxc1aua1017/ua1017 ,   foxc1aua1017/ua1017; ca7Tg/+; ci5Tg/+	aortic arch myl9a expression decreased amount, abnormal pericyte pdgfrb expression decreased amount, abnormal vascular associated smooth muscle cell acta2 expression decreased amount, abnormal vascular associated smooth muscle cell foxc1a expression decreased amount, abnormal vascular associated smooth muscle cell foxc1b expression decreased amount, abnormal ventral aorta decreased length, abnormal
	Fig. S11		foxc1aua1017/ua1017	heart edematous, abnormal
Xu et al., 2018	Fig. 2		foxc1ael543/el543	head decreased size, abnormal hyomandibula decreased size, abnormal palatoquadrate cartilage decreased size, abnormal pericardium edematous, abnormal pharyngeal arch 1 cartilage development decreased occurrence, abnormal pharyngeal arch 2 cartilage development decreased occurrence, abnormal symplectic decreased size, abnormal whole organism dead, abnormal
Yue et al., 2017	Fig. 1		foxc1anju19/nju19	atrioventricular canal endothelial cell mislocalised, abnormal atrioventricular valve morphology, abnormal bulbus arteriosus shortened, abnormal heart contraction decreased occurrence, abnormal heart contraction disrupted, abnormal myocardium decreased thickness, abnormal pericardium decreased thickness, abnormal pericardium edematous, abnormal
	Fig. 2		foxc1anju19/nju19; s843Tg ,   foxc1anju19/nju19	atrioventricular canal bmp4 expression decreased amount, abnormal atrioventricular canal nppa expression increased distribution, abnormal atrioventricular canal nppa expression spatial pattern, abnormal atrioventricular canal tbx2b expression decreased amount, abnormal atrium myh6 expression increased amount, abnormal atrium myh6 expression increased distribution, abnormal atrium increased size, abnormal cardiac ventricle myh7 expression decreased amount, abnormal cardiac ventricle myh7 expression decreased distribution, abnormal cardiac ventricle vcana expression increased distribution, abnormal cardiac ventricle vcana expression spatial pattern, abnormal cardiac ventricle decreased size, abnormal presumptive atrium heart tube myh6 expression increased amount, abnormal presumptive atrium heart tube myh6 expression increased distribution, abnormal presumptive atrium heart tube increased size, abnormal presumptive cardiac ventricle heart tube myh7 expression decreased amount, abnormal presumptive cardiac ventricle heart tube myh7 expression decreased distribution, abnormal presumptive cardiac ventricle heart tube decreased size, abnormal
	Fig. 3		foxc1anju19/nju19	lateral plate mesoderm etsrp expression decreased amount, abnormal lateral plate mesoderm nkx2.5 expression decreased amount, abnormal lateral plate mesoderm tal1 expression decreased amount, abnormal whole organism etsrp expression decreased amount, abnormal whole organism nkx2.5 expression decreased amount, abnormal whole organism tal1 expression decreased amount, abnormal
	Fig. S1		foxc1anju19/nju19	eye decreased size, abnormal pericardium edematous, abnormal whole organism decreased length, abnormal
	Fig. S3		foxc1anju19/nju19	blood hbae1.1 expression decreased amount, abnormal blood hbae1.1 expression decreased distribution, abnormal blood hbae1.1 expression spatial pattern, abnormal erythrocyte development disrupted, abnormal
Banerjee et al., 2015	Fig. 1		foxc1ap162/p162; ml2Tg	primary motor neuron axon guidance process quality, abnormal
	Fig. 2		foxc1ap162/p162; ml2Tg	primary motor neuron axon guidance process quality, abnormal
	Fig. 3		foxc1ap162/p162; ml2Tg	pectoral fin motor nerve 1 motor neuron axon guidance process quality, abnormal pectoral fin motor nerve 2 axon defasciculated, abnormal pectoral fin motor nerve 2 axon terminus mislocalised, abnormal pectoral fin motor nerve 2 motor neuron axon guidance process quality, abnormal pectoral fin motor nerve 3 axon defasciculated, abnormal pectoral fin motor nerve 3 axon terminus mislocalised, abnormal pectoral fin motor nerve 3 motor neuron axon guidance process quality, abnormal pectoral fin motor nerve 4 motor neuron axon guidance process quality, abnormal pectoral fin nerve axon terminus decreased amount, abnormal
	Fig. 4		foxc1ap162/p162	somite grapb expression decreased amount, abnormal somite mybpha expression decreased amount, abnormal
	Fig. 5		foxc1ap162/p162; p163Tg	pectoral fin motor nerve 3 motor neuron axon guidance process quality, abnormal pectoral fin motor nerve 4 axon decreased branchiness, abnormal
	Fig. 6		foxc1ap162/p162	pectoral fin nerve axon terminus decreased amount, abnormal pectoral fin nerve neuromuscular junction decreased amount, abnormal
	Fig. 7		foxc1ap162/p162	pectoral fin decreased mobility, abnormal
Li et al., 2015	Fig. 2		foxc1anju18/nju18 ,   foxc1anju19/nju19	heart edematous, abnormal somite decreased size, abnormal somitogenesis process quality, abnormal whole organism decreased length, abnormal
	Fig. 3		foxc1anju18/nju18 ,   WT + MO2-foxc1a ,   foxc1anju19/nju19	somitogenesis process quality, abnormal
	Fig. 4		foxc1anju18/nju18	paraxial mesoderm fibroblast growth factor receptor signaling pathway decreased process quality, abnormal paraxial mesoderm Notch signaling pathway decreased process quality, abnormal
He et al., 2014	Fig. 3		ki1Tg + MO2-foxc1a	heart edematous, abnormal pronephric glomerulus physical object quality, abnormal
	Fig. 4		AB + MO2-foxc1a	podocyte development decreased process quality, abnormal pronephric glomerulus lacks all parts of type pronephric glomerular capillary, abnormal pronephric glomerulus lacks all parts of type pronephric podocyte slit diaphragm, abnormal pronephric podocyte cell projection malformed, abnormal
Lupo et al., 2011	Fig. 6		WT + MO1-foxc1a + MO2-foxc1a	closure of optic fissure arrested, abnormal optic fissure closure incomplete, abnormal
O'Brien et al., 2011	Fig. 3		TU + MO1-foxc1a	pronephric podocyte decreased amount, abnormal
Palencia-Desai et al., 2011	Fig. 7		WT + MO3-foxc1a ,   WT + MO13-tp53 + MO3-foxc1a	endocardium morphology, abnormal
	Fig. 8		s843Tg + MO3-foxc1a	endocardium morphology, abnormal
	Fig. S3		WT + MO3-foxc1a	somite decreased height, abnormal somite decreased size, abnormal
	Fig. S4		s843Tg + MO3-foxc1a	endocardium decreased size, abnormal
	Fig. S5		s843Tg + MO13-tp53 + MO1-foxc1a + MO3-foxc1a ,   WT + MO13-tp53 + MO1-foxc1a + MO3-foxc1a	endocardium decreased size, abnormal endocardium morphology, abnormal
Skarie et al., 2009	Fig. 2		WT + MO2-foxc1a	brain hydrocephalic, abnormal central nervous system hemorrhagic, abnormal eye decreased size, abnormal eye hemorrhagic, abnormal pericardium edematous, abnormal
De Val et al., 2008	Fig. 4		s843Tg; sd2Tg + MO2-foxc1a	blood circulation disrupted, abnormal intersegmental vessel decreased amount, abnormal vasculature development disrupted, abnormal