ZFIN ID: ZDB-GENE-980526-102
Gene Name: SRY (sex determining region Y)-box 19a
Gene Symbol: sox19a
Sequence Ontology ID : SO:0000704

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Previous Names: sox19 (1), Zf-Sox 19, cb799 (1), fc66c01, wu:fc66c01 (1)

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(Including Attributions)
Location: Chr: 5 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Contributes to DNA-binding activity transcription factor activity; involved in positive regulation of DNA-binding activity transcription factor activity; predicted to localize to the nuclear  ...
GENE EXPRESSION
All Expression Data: 21 figures from 8 publications
Directly Submitted Expression Data: 6 figures (20 images) from Thisse et al., 2001 [cb799]
Wild-type Stages, Structures: Blastula:1k-cell (3.0h-3.33h) to Hatching:Long-pec (48.0h-60.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa6054 Point Mutation Unknown Premature Stop ENU
sa7562 Point Mutation Unknown Missense ENU
Targeting reagents:
PHENOTYPE No data available
DISEASE ASSOCIATED WITH sox19a HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH sox19a VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process positive regulation of DNA-binding transcription factor activity (more)
Cellular Component transcription factor complex (more)
Molecular Function CONTRIBUTES_TO DNA-binding transcription factor activity (more)
GO Terms (all 9)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR009071 (1)
  • InterPro:IPR022097 (1)
  • InterPro:IPR036910 (1)
  • PROSITE:PS50118 (1)
  • Pfam:PF00505 (1)
  • Pfam:PF12336 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    ncRNA sox19a-002 (1) 629
    mRNA sox19a-201 (1) 2170
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM sox19a No data available
    MARKER RELATIONSHIPS
    sox19aContained in: [BAC] CH211-137I24 (1) (order this)
    sox19aContains: [SNP] rs3727898 (1), rs3727899 (1)
    sox19aEncodes: [EST] cb799 (1) (order this), fc66c01
    [cDNA] MGC:100784 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_130908 (1) 2028bp
    Genomic GenBank:BX119902 (1) 170241bp
    Select Tool
    Polypeptide UniProtKB:P47792 (1) 297aa
    Sequence Clusters UniGene:32892 (1)
    Sequence Information (all 22)
    OTHER sox19a GENE PAGES
  • Alliance (1)
  • Gene:30038 (1)
  • VEGA:OTTDARG00000016206 (1)
  • ORTHOLOGY for sox19a (Chr: 5)
    CITATIONS (66)