ZFIN is now using GRCz12tu for Genomic Data
Gene
sox19b
- ID
- ZDB-GENE-010111-1
- Name
- SRY-box transcription factor 19b
- Symbol
- sox19b Nomenclature History
- Previous Names
- Type
- protein_coding_gene
- Location
- Chr: 7 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Contributes to DNA-binding transcription factor activity. Involved in neural crest cell differentiation and neural tube development. Acts upstream of or within several processes, including dorsal/ventral axis specification; epiboly involved in gastrulation with mouth forming second; and positive regulation of DNA-binding transcription factor activity. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Is expressed in several structures, including central nervous system; neural keel; neural rod; neural tube; and presumptive structure. Orthologous to human SOX15 (SRY-box transcription factor 15).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 33 figures from 19 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- cb174 (13 images)
Wild Type Expression Summary
- All Phenotype Data
- 18 figures from 5 publications
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
Domain Details Per Protein
| Protein | Additional Resources | Length | High mobility group box domain | High mobility group box domain superfamily | SRY-related HMG-box transcription factor-like | Transcription factor SOX |
|---|---|---|---|---|---|---|
| UniProtKB:Q9DDD7 | InterPro | 292 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
sox19b-201
(1)
|
Ensembl | 2,561 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers