Transcript

srsf2a-208

ID

ZDB-TSCRIPT-130528-197

Name

srsf2a-208 Nomenclature History

Previous Names

sfrs2-009
srsf2a-009

Transcript Type

aberrant processed transcript

Annotation Status

nonsense mediated decay

Annotation Method

Ensembl

Associated With Genes

srsf2a (1)

Strain

Non Reference Strain

Genome Resources

RNA Central

None

Note

None

Sequence

ENSDART00000153102 (1) [ Show ] (double-click sequence to select)

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>tpe|ENSDART00000153102.3|gene_biotype:protein_coding|ENSDARG00000057484.8 transcript_biotype:nonsense_mediated_decay cdna chromosome:GRCz11:12:31720693:31724004:-1
CATTGCTGGACGGGCGCGAGCTGCGCGTGCAGATGGCGCG
ATATGGGCGCCCGCCAGACGCGCACTACAGCCGCCGCGGA
GCCCCGCCGAGGAGATACGGGGGATATGGACGGAGAAGTC
GAAGCCGTAGTCCTCGGCGCAGGAAGCACAGCAGGTCCAG
ATCCAGAAGCAGGAGCCGGTCTCGTTCCCGAAGCAGGTCC
CGCTACAGCCGATCCAGATCCCGGTCTTACTCTCGTTCCC
GGTCTCGGTCCCGATCCCGCTCCAAAACCCGCACCCCTCG
CAGAAGCAAGTCAAAATCACCTTCCAGGTCCCGCTCAAGG
TCCAAGTCCAAATCTCACTCCAGGAGCCGCACCCCCAGAT
CGAACAAAGGATCCAAATCCAGGTCCAGATCAAGAAGCAG
ACCCAAGTCTCCAGAGGCTACTGATGACGCTGCTGTTGAA
TCGTGAAATATGATGACTGGTTGAATCTTCAAGGATCGCA
GTGAACAGATGTCCGTCTGAGGATACCCAAATTATCCATA
TATCAGACCGAAAGGCGCAGTTGCGTAGCAGTTGAGTTTT
GCTGGTTAGCTGTTAAGGTGGCGTGTTGCGGTGCAGAGTG
CTTGGCTGTTTCCAGTATTCTCCTGATTGCTCCTGTGTAA
CGCCCCGATTTGTTTAAATTTGGCTGCTGCGTTTTTATTT
GCAGAAACATCTTGTGCAAGTCTTTTTATGAATATTCATA
ATGCAGATGTCTGAGCTTAACTCATATCCACAATAGTTCC
ATCATTCAACATGCTCAATTTGTAGTAATTTCCATGTGAG
TGGTAATAAAGGTTTCCTTTGTGTATACCTAATTCTTTAC
TGGTCTGTCAGTGTCTCTTATGATGTTTGATGTAAACGCG
CAAATTAAAAGCCTCCATAACTGGAAAT

OTTDART00000058775 (1) [ Show ] (double-click sequence to select)

[Download]

>tpe|OTTDART00000058775|OTTDARG00000020615|ZDB-GENE-040426-2706 srsf2a|OTTDARP00000045901 sfrs2-009 LG_ CR352342.9 Danio rerio protein_coding KNOWN, 908 bp
CATTGCTGGACGGGCGCGAGCTGCGCGTGCAGATGGCGCG
ATATGGGCGCCCGCCAGACGCGCACTACAGCCGCCGCGGA
GCCCCGCCGAGGAGATACGGGGGATATGGACGGAGAAGTC
GAAGCCGTAGTCCTCGGCGCAGGAAGCACAGCAGGTCCAG
ATCCAGAAGCAGGAGCCGGTCTCGTTCCCGAAGCAGGTCC
CGCTACAGCCGATCCAGATCCCGGTCTTACTCTCGTTCCC
GGTCTCGGTCCCGATCCCGCTCCAAAACCCGCACCCCTCG
CAGAAGCAAGTCAAAATCACCTTCCAGGTCCCGCTCAAGG
TCCAAGTCCAAATCTCACTCCAGGAGCCGCACCCCCAGAT
CGAACAAAGGATCCAAATCCAGGTCCAGATCAAGAAGCAG
ACCCAAGTCTCCAGAGGCTACTGATGACGCTGCTGTTGAA
TCGTGAAATATGATGACTGGTTGAATCTTCAAGGATCGCA
GTGAACAGATGTCCGTCTGAGGATACCCAAATTATCCATA
TATCAGACCGAAAGGCGCAGTTGCGTAGCAGTTGAGTTTT
GCTGGTTAGCTGTTAAGGTGGCGTGTTGCGGTGCAGAGTG
CTTGGCTGTTTCCAGTATTCTCCTGATTGCTCCTGTGTAA
CGCCCCGATTTGTTTAAATTTGGCTGCTGCGTTTTTATTT
GCAGAAACATCTTGTGCAAGTCTTTTTATGAATATTCATA
ATGCAGATGTCTGAGCTTAACTCATATCCACAATAGTTCC
ATCATTCAACATGCTCAATTTGTAGTAATTTCCATGTGAG
TGGTAATAAAGGTTTCCTTTGTGTATACCTAATTCTTTAC
TGGTCTGTCAGTGTCTCTTATGATGTTTGATGTAAACGCG
CAAATTAAAAGCCTCCATAACTGGAAAT

Related Transcripts

Transcripts related to srsf2a

Type	Name	Annotation Method	Length (nt)	Analysis
aberrant processed transcript	srsf2a-202 (1) Ensembl	Ensembl	582 nt	Select Tool ZFIN BLAST
aberrant processed transcript	srsf2a-205 (1) Ensembl	Ensembl	567 nt	Select Tool ZFIN BLAST
aberrant processed transcript	srsf2a-206 (1) Ensembl	Ensembl	603 nt	Select Tool ZFIN BLAST
aberrant processed transcript	srsf2a-208	Ensembl	908 nt
mRNA	srsf2a-201 (1) Ensembl	Ensembl	1,776 nt	Select Tool ZFIN BLAST
mRNA	srsf2a-204 (1) Ensembl	Ensembl	1,151 nt	Select Tool ZFIN BLAST
mRNA	srsf2a-207 (1) Ensembl	Ensembl	855 nt	Select Tool ZFIN BLAST
mRNA	srsf2a-209 (1) Ensembl	Ensembl	707 nt	Select Tool ZFIN BLAST
mRNA	srsf2a-211 (1) Ensembl	Ensembl	788 nt	Select Tool ZFIN BLAST
ncRNA	srsf2a-002 (1) Ensembl	Ensembl	1,024 nt	Select Tool ZFIN BLAST
ncRNA	srsf2a-010 (1) Ensembl	Ensembl	636 nt	Select Tool ZFIN BLAST

Segment Relationships

Protein Products

No data available

Supporting Sequences

Citations