ZFIN Gene: lmo7a

ZFIN ID: ZDB-GENE-030219-74

ZFIN ID: ZDB-GENE-030219-74

Gene Name:

LIM domain 7a

Gene Symbol:

lmo7a

Sequence Ontology ID :

SO:0001217

Previous Names:

lmo7 (1), fc03h03, id:ibd5155 (1), si:dkey-57a22.10 (1), wu:fc03h03 (1)

Location:

Chr: 9 Mapping Details/Browsers

Nomenclature History

AUTOMATED DESCRIPTION

Predicted to have metal ion binding activity. Predicted to be involved in regulation of cell adhesion and regulation of signaling. Is expressed in several structures, including brain; digestive ...

GENE EXPRESSION
All Expression Data:	4 figures from 2 publications
Directly Submitted Expression Data:	2 figures (4 images) from Kudoh et al., 2001 [ibd5155]
Wild-type Stages, Structures:	Cleavage:4-cell (1.0h-1.25h) to Larval:Day 4 (96.0h-120.0h)
	cerebellum diencephalon eye gut heart hindbrain immature eye intestine lens liver midbrain midbrain hindbrain boundary optic tectum otic vesicle pectoral fin pharyngeal arch 3-7 primitive heart tube solid lens vesicle somite tegmentum whole organism
Curated Microarray Expression:	GEO (1)

MUTATIONS AND SEQUENCE TARGETING REAGENTS

Allele	Type	Localization	Consequence	Mutagen	Suppliers
sa13371	Point Mutation	Unknown	Premature Stop	ENU	European Zebrafish Resource Center (EZRC) (order this) Zebrafish International Resource Center (ZIRC) (order this)
sa17775	Point Mutation	Unknown	Premature Stop	ENU	European Zebrafish Resource Center (EZRC) (order this) Zebrafish International Resource Center (ZIRC) (order this)
sa21468	Point Mutation	Unknown	Premature Stop	ENU	European Zebrafish Resource Center (EZRC) (order this) Zebrafish International Resource Center (ZIRC) (order this)
sa25424	Point Mutation	Unknown	Splice Site	ENU
sa27385	Point Mutation	Unknown	Premature Stop	ENU	European Zebrafish Resource Center (EZRC) (order this) Zebrafish International Resource Center (ZIRC) (order this)
sa34620	Point Mutation	Unknown	Premature Stop	ENU	European Zebrafish Resource Center (EZRC) (order this) Zebrafish International Resource Center (ZIRC) (order this)
sa38736	Point Mutation	Unknown	Premature Stop	ENU	European Zebrafish Resource Center (EZRC) (order this) Zebrafish International Resource Center (ZIRC) (order this)
sa45354	Point Mutation	Unknown	Premature Stop	ENU	Zebrafish International Resource Center (ZIRC) (order this)
sa45355	Point Mutation	Unknown	Premature Stop	ENU	Zebrafish International Resource Center (ZIRC) (order this)

PHENOTYPE No data available

DISEASE ASSOCIATED WITH lmo7a HUMAN ORTHOLOG No data available

DISEASE ASSOCIATED WITH lmo7a VIA EXPERIMENTAL MODELS No data available

GENE ONTOLOGY

Ontology	GO Term
Biological Process	regulation of cell adhesion (more)
Molecular Function	metal ion binding (more)

GO Terms (all 3)

PROTEIN FAMILIES, DOMAINS AND SITES
InterPro:IPR001478 (1) InterPro:IPR001715 (1) InterPro:IPR001781 (1) InterPro:IPR029978 (1) InterPro:IPR031865 (1) InterPro:IPR036034 (1) InterPro:IPR036872 (1) InterPro:IPR041489 (1)	PROSITE:PS00478 (1) PROSITE:PS50021 (1) PROSITE:PS50023 (1) PROSITE:PS50106 (1)	Pfam:PF00307 (1) Pfam:PF00412 (1) Pfam:PF15949 (1) Pfam:PF17820 (1)

TRANSCRIPTS
Type	Name	Length (bp)	Analysis
ncRNA	lmo7a-003 (1)	962	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	lmo7a-004 (1)	914	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	lmo7a-005 (1)	733	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	lmo7a-007 (1)	824	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	lmo7a-008 (1)	740	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	lmo7a-012 (1)	895	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	lmo7a-013 (1)	853	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	lmo7a-201 (1)	6323	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	lmo7a-202 (1)	812	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
aberrant processed transcript	lmo7a-203 (1)	625	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	lmo7a-204 (1)	1052	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	lmo7a-210 (1)	663	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	lmo7a-212 (1)	754	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

GENE PRODUCT DESCRIPTION No description available

INTERACTIONS AND PATHWAYS

ANTIBODIES No data available

PLASMIDS No data available

CONSTRUCTS WITH SEQUENCES FROM lmo7a No data available

MARKER RELATIONSHIPS

lmo7a Contained in:	[BAC] DKEY-57A22 (1) (order this)
lmo7a Encodes:	[EST] fc03h03, ibd5155 (order this)

SEQUENCE INFORMATION

Type	Accession #	Length (bp/aa)	Analysis
RNA	RefSeq:NM_001128231 (1)	6323 bp	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
Genomic	GenBank:CR536604 (1)	217381 bp	Blast at MegaBLAST
Polypeptide	UniProtKB:B0UYM8 (1)	1826 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
Sequence Clusters	UniGene:78000 (1)

Sequence Information (all 48)

OTHER lmo7a GENE PAGES

Alliance (1)

Gene:553341 (1)

VEGA:OTTDARG00000026179 (1)

Ensembl(GRCz11):ENSDARG00000004930 (2)

ORTHOLOGY for lmo7a ( Chr: 9 )

CITATIONS (20)

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