ZFIN Gene: lmo7a

ZFIN ID: ZDB-GENE-030219-74

ZFIN ID: ZDB-GENE-030219-74

Gene Name:

LIM domain 7a

Gene Symbol:

lmo7a Nomenclature History

Previous Names:

lmo7 (1), fc03h03, id:ibd5155 (1), si:dkey-57a22.10 (1), wu:fc03h03 (1)

Gene Type:

protein_coding_gene

Location:

Chr: 9 Mapping Details/Browsers

Description:

Predicted to have metal ion binding activity. Predicted to be involved in regulation of cell adhesion and regulation of signaling. Is expressed in several structures, including brain; digestive system; eye; immature eye; and pericardial region. Orthologous to human LMO7 (LIM domain 7).

Genome Resources:

Alliance (1), Gene:553341 (1), Ensembl(GRCz11):ENSDARG00000004930 (2)

GENE EXPRESSION
All Expression Data:	4 figures from 2 publications
Directly Submitted Expression Data:	2 figures (4 images) from Kudoh et al., 2001 [ibd5155]
Wild-type Stages, Structures:	Cleavage:4-cell (1.0h-1.25h) to Larval:Day 4 (96.0h-120.0h)
	cerebellum diencephalon eye gut heart hindbrain immature eye intestine lens liver midbrain midbrain hindbrain boundary optic tectum otic vesicle pectoral fin pharyngeal arch 3-7 primitive heart tube solid lens vesicle somite tegmentum whole organism
High Throughput Expression:	GEO (1) , Expression Atlas (1)

MUTATIONS AND SEQUENCE TARGETING REAGENTS

Allele	Type	Localization	Consequence	Mutagen	Suppliers
sa13371	Point Mutation	Unknown	Premature Stop	ENU	European Zebrafish Resource Center (EZRC) (order this) Zebrafish International Resource Center (ZIRC) (order this)
sa17775	Point Mutation	Unknown	Premature Stop	ENU	European Zebrafish Resource Center (EZRC) (order this) Zebrafish International Resource Center (ZIRC) (order this)
sa21468	Point Mutation	Unknown	Premature Stop	ENU	European Zebrafish Resource Center (EZRC) (order this) Zebrafish International Resource Center (ZIRC) (order this)
sa25424	Point Mutation	Unknown	Splice Site	ENU
sa27385	Point Mutation	Unknown	Premature Stop	ENU	European Zebrafish Resource Center (EZRC) (order this) Zebrafish International Resource Center (ZIRC) (order this)
sa34620	Point Mutation	Unknown	Premature Stop	ENU	European Zebrafish Resource Center (EZRC) (order this) Zebrafish International Resource Center (ZIRC) (order this)
sa38736	Point Mutation	Unknown	Premature Stop	ENU	European Zebrafish Resource Center (EZRC) (order this) Zebrafish International Resource Center (ZIRC) (order this)
sa45354	Point Mutation	Unknown	Premature Stop	ENU	Zebrafish International Resource Center (ZIRC) (order this)
sa45355	Point Mutation	Unknown	Premature Stop	ENU	Zebrafish International Resource Center (ZIRC) (order this)

PHENOTYPE No data available

DISEASE ASSOCIATED WITH lmo7a HUMAN ORTHOLOG No data available

DISEASE ASSOCIATED WITH lmo7a VIA EXPERIMENTAL MODELS No data available

GENE ONTOLOGY

Ontology	GO Term
Biological Process	regulation of cell adhesion (more)
Molecular Function	metal ion binding (more)

GO Terms (all 3)

PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available

TRANSCRIPTS
Type	Name	Length (nt)	Analysis
aberrant processed transcript	lmo7a-203 (1)	625	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	lmo7a-201 (1)	6323	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	lmo7a-202 (1)	812	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	lmo7a-204 (1)	1052	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	lmo7a-210 (1)	663	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	lmo7a-212 (1)	754	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	lmo7a-003 (1)	962	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	lmo7a-004 (1)	914	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	lmo7a-005 (1)	733	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	lmo7a-007 (1)	824	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	lmo7a-008 (1)	740	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	lmo7a-012 (1)	895	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	lmo7a-013 (1)	853	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Browsers: UCSC, NCBI, Ensembl, ZFIN

INTERACTIONS AND PATHWAYS

ANTIBODIES No data available

PLASMIDS No data available

CONSTRUCTS WITH SEQUENCES FROM lmo7a No data available

MARKER RELATIONSHIPS

lmo7a Contained in:	[BAC] DKEY-57A22 (1) (order this)
lmo7a Encodes:	[EST] fc03h03, ibd5155

SEQUENCE INFORMATION

Type	Accession #	Length (nt/aa)	Analysis
RNA	RefSeq:NM_001128231 (1)	6323 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
Genomic	GenBank:CR536604 (1)	217381 nt	Blast at MegaBLAST
Polypeptide	UniProtKB:B0UYM8 (1)	1826 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast

Sequence Information (all 47)

ORTHOLOGY for lmo7a ( Chr: 9 )

CITATIONS (21)

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