ZFIN is now using GRCz12tu for Genomic Data

Gene

pax2a

ID

ZDB-GENE-990415-8

Name

paired box 2a

Symbol

pax2a Nomenclature History

Previous Names

Pax-2
pax-b
pax2.1
Pax2.1
pax2a1
paxb
cb378 (1)
no isthmus
noi
pax[zf-b]

Type

protein_coding_gene

Location

Chr: 13 Mapping Details/Browsers

Genome Assembly

GRCz12tu

Annotation Status

Current

Description

Enables sequence-specific DNA binding activity. Involved in nervous system development. Acts upstream of or within several processes, including embryonic organ morphogenesis; nervous system development; and pronephros development. Located in nucleus. Is expressed in several structures, including immature eye; mesoderm; nervous system; neural keel; and pronephros. Used to study coloboma. Human ortholog(s) of this gene implicated in focal segmental glomerulosclerosis 7; renal Wilms' tumor; and renal coloboma syndrome. Orthologous to human PAX2 (paired box 2).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

822 figures from 573 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

cb378 (47 images)

Wild Type Expression Summary

Phenotype

All Phenotype Data: 70 figures from 38 publications
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With pax2a Human Ortholog

Disease Ontology Term	Multi-Species Data	OMIM Term	OMIM Phenotype ID
focal segmental glomerulosclerosis 7	Alliance	Glomerulosclerosis, focal segmental, 7	616002
renal coloboma syndrome	Alliance	Papillorenal syndrome	120330

Associated With pax2a Via Experimental Models

Human Disease	Fish	Conditions	Citations
coloboma	pax2a^tu29a/tu29a	standard conditions	(2)

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR001523	Paired domain
Domain	IPR022130	Paired-box protein 2 C-terminal
Family	IPR043565	PAX family
Homologous_superfamily	IPR009057	Homedomain-like superfamily
Homologous_superfamily	IPR036388	Winged helix-like DNA-binding domain superfamily

Domain Details Per Protein

Protein	Additional Resources	Length
UniProtKB:A0A8M2B3N2	InterPro	421
UniProtKB:A0A8M9PXM3	InterPro	296
UniProtKB:A0A8M9Q9I1	InterPro	410
UniProtKB:A0A8M6Z1K8	InterPro	461
UniProtKB:A0A8M6Z270	InterPro	515
UniProtKB:A0A8M9QN93	InterPro	425
UniProtKB:A0A8M9Q9H0	InterPro	495
UniProtKB:A0A8M9QN89	InterPro	480
UniProtKB:A0A8M9QJH4	InterPro	504
UniProtKB:A0A8M9QF73	InterPro	395
UniProtKB:A0A8M2B2T3	InterPro	406
UniProtKB:A0A8M9Q9I5	InterPro	292
UniProtKB:A0A8M9QN86	InterPro	504
UniProtKB:A0A8M9PXL0	InterPro	449
UniProtKB:A0A8M9QJI2	InterPro	417
UniProtKB:A0A8M9Q9H5	InterPro	434
UniProtKB:A0A8M9PXK5	InterPro	502
UniProtKB:A0A8M9QF68	InterPro	432
UniProtKB:A0A8M6Z3Q2	InterPro	491
UniProtKB:A0A8M9QJI6	InterPro	318
UniProtKB:A0A8M9PXL5	InterPro	410
UniProtKB:A0A8M9QF63	InterPro	487
UniProtKB:A0A8M9Q9G5	InterPro	519
UniProtKB:Q90268	InterPro	410
UniProtKB:A0A8M6Z9H7	InterPro	476
UniProtKB:A0A8M2B324	InterPro	508
UniProtKB:B8JJS4	InterPro	406
UniProtKB:A0A8M9QF58	InterPro	512
UniProtKB:A0A8M9QJH9	InterPro	465
UniProtKB:A0A8M9QN98	InterPro	335
UniProtKB:A0AB32U4Y5	InterPro	368
UniProtKB:A0AC58H005	InterPro	493
UniProtKB:A0AC58H006	InterPro	489
UniProtKB:A0AC58H007	InterPro	482
UniProtKB:A0AC58H009	InterPro	478
UniProtKB:A0AC58H010	InterPro	480
UniProtKB:A0AC58H011	InterPro	493
UniProtKB:A0AC58H012	InterPro	485
UniProtKB:A0AC58H013	InterPro	487
UniProtKB:A0AC58H015	InterPro	483
UniProtKB:A0AC58H016	InterPro	497
UniProtKB:A0AC58H017	InterPro	476
UniProtKB:A0AC58H018	InterPro	472
UniProtKB:A0AC58H020	InterPro	468
UniProtKB:A0AC58H022	InterPro	438
UniProtKB:A0AC58H023	InterPro	423
UniProtKB:A0AC58H024	InterPro	434
UniProtKB:A0AC58H025	InterPro	427
UniProtKB:A0AC58H026	InterPro	423
UniProtKB:A0AC58H027	InterPro	417
UniProtKB:A0AC58H028	InterPro	428
UniProtKB:A0AC58H029	InterPro	427
UniProtKB:A0AC58H030	InterPro	442
UniProtKB:A0AC58H031	InterPro	430
UniProtKB:A0AC58H032	InterPro	419
UniProtKB:A0AC58H033	InterPro	415
UniProtKB:A0AC58H038	InterPro	413
UniProtKB:A0AC58H040	InterPro	412
UniProtKB:A0AC58H041	InterPro	402
UniProtKB:A0AC58H042	InterPro	408
UniProtKB:A0AC58H043	InterPro	398
UniProtKB:A0AC58H048	InterPro	413

Transcripts

Genome Browsers

ZFIN

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	pax2a-201 (1) Ensembl	Ensembl	4,201 nt	Select Tool ZFIN BLAST
mRNA	pax2a-202 (1) Ensembl	Ensembl	3,050 nt	Select Tool ZFIN BLAST
mRNA	pax2a-203 (1) Ensembl	Ensembl	1,148 nt	Select Tool ZFIN BLAST
mRNA	pax2a-205 (1) Ensembl	Ensembl	1,126 nt	Select Tool ZFIN BLAST
mRNA	pax2a-206 (1) Ensembl	Ensembl	1,221 nt	Select Tool ZFIN BLAST
mRNA	pax2a-207 (1) Ensembl	Ensembl	879 nt	Select Tool ZFIN BLAST
mRNA	pax2a-208 (1) Ensembl	Ensembl	1,202 nt	Select Tool ZFIN BLAST
mRNA	pax2a-209 (1) Ensembl	Ensembl	1,190 nt	Select Tool ZFIN BLAST
mRNA	pax2a-210 (1) Ensembl	Ensembl	1,171 nt	Select Tool ZFIN BLAST
mRNA	pax2a-211 (1) Ensembl	Ensembl	1,145 nt	Select Tool ZFIN BLAST
mRNA	pax2a-212 (1) Ensembl	Ensembl	4,267 nt	Select Tool ZFIN BLAST
mRNA	pax2a-213 (1) Ensembl	Ensembl	4,246 nt	Select Tool ZFIN BLAST
ncRNA	pax2a-006 (1) Ensembl	Ensembl	323 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

Name	Type	Antigen Genes	Isotype	Host Organism	Assay	Source	Citations
Ab4-pax2a	polyclonal	pax2a	IgG	Rabbit	IHC	Abcam plc	6
Ab1-pax2	polyclonal	pax2a		Rabbit	IHC	Covance BioLegend	31
Ab1-pax2a	polyclonal	pax2a		Rabbit	IHC WB		5

Plasmids

Constructs

Marker Relationships

Sequences

Genome Browsers

NCBI Map Viewer

ZFIN

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations