Amsterdam, A., Nissen, R.M., Sun, Z., Swindell, E., Farrington, S., and Hopkins, N. (2004) Identification of 315 genes essential for early zebrafish development. Proceedings of the National Academy of Sciences of the United States of America. 101(35):12792-12797

Antkiewicz, D.S., Peterson, R.E., and Heideman, W. (2006) Blocking Expression of AHR2 and ARNT1 in Zebrafish Larvae Protects Against Cardiac Toxicity of 2,3,7,8-Tetrachlorodibenzo-p-dioxin. Toxicological sciences : an official journal of the Society of Toxicology. 94(1):175-182

Behrendt, L., Jönsson, M.E., Goldstone, J.V., and Stegeman, J.J. (2010) Induction of cytochrome P450 1 genes and stress response genes in developing zebrafish exposed to ultraviolet radiation. Aquatic toxicology (Amsterdam, Netherlands). 98(1):74-82

Carney, S.A., Prasch, A.L., Heideman, W., and Peterson, R.E. (2006) Understanding dioxin developmental toxicity using the zebrafish model. Birth defects research. Part A, Clinical and molecular teratology. 76(1):7-18

Chen, Y.Y., Chan, K.M. (2016) Differential effects of metal ions on TCDD-induced cytotoxicity and cytochrome P4501A1 gene expression in a zebrafish liver (ZFL) cell-line. Metallomics : integrated biometal science. 8(2):236-51

Chen, Y.Y., Chan, K.M. (2017) Transcriptional inhibition of TCDD-mediated induction of cytochrome P450 1A1 and alteration of protein expression in a zebrafish hepatic cell line following the administration of TCDD and Cd².. Toxicology letters. 282:121-135

Edwards, H.E., Edgington, M.J., Souder, J.P., Gorelick, D.A. (2023) Hemato-vascular specification requires arnt1 and arnt2 genes in zebrafish embryos. Development (Cambridge, England). 150(9)

Evans, B.R., Karchner, S.I., Franks, D.G., and Hahn, M.E. (2005) Duplicate aryl hydrocarbon receptor repressor genes (ahrr1 and ahrr2) in the zebrafish Danio rerio: Structure, function, evolution, and AHR-dependent regulation in vivo. Archives of biochemistry and biophysics. 441(2):151-167

Fent, K., Chew, G., Li, J., Gomez, E. (2014) Benzotriazole UV-stabilizers and benzotriazole: Antiandrogenic activity in vitro and activation of aryl hydrocarbon receptor pathway in zebrafish eleuthero-embryos. The Science of the total environment. 482-483:125-36

Golling, G., Amsterdam, A., Sun, Z., Antonelli, M., Maldonado, E., Chen, W., Burgess, S., Haldi, M., Artzt, K., Farrington, S., Lin, S.Y., Nissen, R.M., and Hopkins, N. (2002) Insertional mutagenesis in zebrafish rapidly identifies genes essential for early vertebrate development. Nature Genetics. 31(2):135-140

Hsieh, C.S., Ko, C.Y., Chen, S.Y., Liu, T.M., Wu, J.S., Hu, C.H., and Sun, C.K. (2008) In vivo long-term continuous observation of gene expression in zebrafish embryo nerve systems by using harmonic generation microscopy and morphant technology. Journal of Biomedical Optics. 13(6):064041

Hu, P., Liu, M., Liu, Y., Wang, J., Zhang, D., Niu, H., Jiang, S., Wang, J., Zhang, D., Han, B., Xu, Q., Chen, L. (2016) Transcriptome comparison reveals a genetic network regulating the lower temperature limit in fish. Scientific Reports. 6:28952

Jönsson, M.E., Jenny, M.J., Woodin, B.R., Hahn, M.E., and Stegeman, J.J. (2007) Role of AHR2 in the Expression of Novel Cytochrome P450 1 Family Genes, Cell Cycle Genes, and Morphological Defects in Developing Zebrafish Exposed to 3,3',4,4',5-pentachlorobiphenyl or 2,3,7,8-tetrachlorodibenzo-p-dioxin. Toxicological sciences : an official journal of the Society of Toxicology. 100(1):180-193

Kubota, A., Bainy, A.C., Woodin, B.R., Goldstone, J.V., and Stegeman, J.J. (2013) The cytochrome P450 2AA gene cluster in zebrafish (Danio rerio): Expression of CYP2AA1 and CYP2AA2 and response to phenobarbital-type inducers. Toxicology and applied pharmacology. 272(1):172-9

Li, M., Wang, X., Zhu, J., Zhu, S., Hu, X., Zhu, C., Guo, X., Yu, Z., Han, S. (2014) Toxic effects of polychlorinated biphenyls on cardiac development in zebrafish. Molecular biology reports. 41(12):7973-83

Liu, H., Ma, Z., Zhang, T., Yu, N., Su, G., Giesy, J.P., Yu, H. (2018) Pharmacokinetics and effects of tetrabromobisphenol a (TBBPA) to early life stages of zebrafish (Danio rerio). Chemosphere. 190:243-252

Löhr, H., Ryu, S., and Driever, W. (2009) Zebrafish diencephalic A11-related dopaminergic neurons share a conserved transcriptional network with neuroendocrine cell lineages. Development (Cambridge, England). 136(6):1007-1017

Marchi, D., Santhakumar, K., Markham, E., Li, N., Storbeck, K.H., Krone, N., Cunliffe, V.T., van Eeden, F.J.M. (2020) Bidirectional crosstalk between Hypoxia-Inducible Factor and glucocorticoid signalling in zebrafish larvae. PLoS Genetics. 16:e1008757

Meng, Q., Yeung, K., Kwok, M.L., Chung, C.T., Hu, X.L., Chan, K.M. (2020) Toxic effects and transcriptome analyses of zebrafish (Danio rerio) larvae exposed to benzophenones. Environmental pollution (Barking, Essex : 1987). 265:114857

Powell, W.H. and Hahn, M.E. (2000) The evolution of aryl hydrocarbon signaling proteins: diversity of ARNT isoforms among fish species. Marine Environmental Research. 50(1-5):39-44

Prasch, A.L., Heideman, W., and Peterson, R.E. (2004) ARNT2 Is Not Required for TCDD Developmental Toxicity in Zebrafish. Toxicological sciences : an official journal of the Society of Toxicology. 82(1):250-258

Salanga, M.C., Brun, N.R., Francolini, R.D., Stegeman, J.J., Goldstone, J.V. (2019) CRISPR-Cas9 mutated pregnane x receptor (pxr) retains pregnenolone-induced expression of cyp3a65 in zebrafish (Danio rerio) larvae. Toxicological sciences : an official journal of the Society of Toxicology. 174(1):51-62

Smirnova, A., Mentor, A., Ranefall, P., Bornehag, C.G., Brunström, B., Mattsson, A., Jönsson, M. (2020) Increased apoptosis, reduced Wnt/β-catenin signaling, and altered tail development in zebrafish embryos exposed to a human-relevant chemical mixture. Chemosphere. 264:128467

Tanguay, R.L., Andreasen, E., Heideman, W., and Peterson, R.E. (2000) Identification and expression of alternatively spliced aryl hydrocarbon nuclear translocator 2 (ARNT2) cDNAs from zebrafish with distinct functions. Biochim. Biophys. Acta Gene Struct. Exp.. 1494(1-2):117-128

Varshney, G.K., Lu, J., Gildea, D., Huang, H., Pei, W., Yang, Z., Huang, S.C., Schoenfeld, D.S., Pho, N., Casero, D., Hirase, T., Mosbrook-Davis, D.M., Zhang, S., Jao, L.E., Zhang, B., Woods, I.G., Zimmerman, S., Schier, A.F., Wolfsberg, T., Pellegrini, M., Burgess, S.M., and Lin, S. (2013) A large-scale zebrafish gene knockout resource for the genome-wide study of gene function. Genome research. 23(4):727-735

Wang, W.-D., Chen, Y.-M., and Hu, C.-H. (1998) Detection of Ah receptor and Ah receptor nuclear translocator mRNAs in the oocytes and developing embryos of zebrafish (Danio rerio). Fish physiology and biochemistry. 18:49-57

Wang, Y., Chen, K., Yao, Q., Zheng, X., and Yang, Z. (2009) Phylogenetic Analysis of Zebrafish Basic Helix-Loop-Helix Transcription Factors. Journal of molecular evolution. 68(6):629-640

Wincent, E., Stegeman, J.J., Jönsson, M.E. (2015) Combination effects of AHR agonists and Wnt/β-catenin modulators in zebrafish embryos: Implications for physiological and toxicological AHR functions. Toxicology and applied pharmacology. 284(2):163-79

Woods, I.G., Wilson, C., Friedlander, B., Chang, P., Reyes, D.K., Nix, R., Kelly, P.D., Chu, F., Postlethwait, J.H., and Talbot, W.S. (2005) The zebrafish gene map defines ancestral vertebrate chromosomes. Genome research. 15(9):1307-1314

Zhang, L., Jin, Y., Han, Z., Liu, H., Shi, L., Hua, X., A Doering, J., Tang, S., P Giesy, J., Yu, H. (2017) INTEGRATED IN SILICO AND IN VIVO APPROACHES TO INVESTIGATE EFFECTS OF BDE-99 MEDIATED BY THE NUCLEAR RECEPTORS ON DEVELOPING ZEBRAFISH. Environmental toxicology and chemistry. 37(3):780-787

Zucchi, S., Castiglioni, S., and Fent, K. (2013) Progesterone Alters Global Transcription Profiles at Environmental Concentrations in Brain and Ovary of Female Zebrafish (Danio rerio). Environmental science & technology. 47(21):12548-56

Chen, F., Pu, S., Tian, L., Zhang, H., Zhou, H., Yan, Y., Hu, X., Wu, Q., Chen, X., Cheng, S.H., Xu, S. (2024) Radix Rehmanniae Praeparata promoted zebrafish fin regeneration through aryl hydrocarbon receptor-dependent autophagy. Journal of ethnopharmacology. 331:118272

Wohlfart, D.P., Lou, B., Middel, C.S., Morgenstern, J., Fleming, T., Sticht, C., Hausser, I., Hell, R., Hammes, H.P., Szendrödi, J., Nawroth, P.P., Kroll, J. (2022) Accumulation of acetaldehyde in aldh2.1^-/- zebrafish causes increased retinal angiogenesis and impaired glucose metabolism. Redox Biology. 50:102249

Meng, Q., Yeung, K., Kwok, M.L., Chung, C.T., Hu, X.L., Chan, K.M. (2020) Toxic effects and transcriptome analyses of zebrafish (Danio rerio) larvae exposed to benzophenones. Environmental pollution (Barking, Essex : 1987). 265:114857

Mentor, A., Brunström, B., Mattsson, A., Jönsson, M. (2019) Developmental exposure to a human relevant mixture of endocrine disruptors alters metabolism and adipogenesis in zebrafish (Danio rerio). Chemosphere. 238:124584

Chen, Y.Y., Chan, K.M. (2018) Modulations of TCDD-mediated induction of zebrafish cyp1a1 and the AHR pathway by administering Cd²⁺in vivo.. Chemosphere. 210:577-587

Sopezki, M.D.S., Monserrat, J.M., Yunes, J.S., Zanette, J. (2018) Validation of Housekeeping Genes as Internal Controls for the Study of the Effects of Microcystin-LR in Zebrafish by Real-Time PCR. Zebrafish. 15(5):454-459

Chen, Y.Y., Chan, K.M. (2017) Transcriptional inhibition of TCDD-mediated induction of cytochrome P450 1A1 and alteration of protein expression in a zebrafish hepatic cell line following the administration of TCDD and Cd².. Toxicology letters. 282:121-135

Chen, Y.Y., Chan, K.M. (2016) Differential effects of metal ions on TCDD-induced cytotoxicity and cytochrome P4501A1 gene expression in a zebrafish liver (ZFL) cell-line. Metallomics : integrated biometal science. 8(2):236-51

Kasher, P.R., Schertz, K.E., Thomas, M., Jackson, A., Annunziata, S., Ballesta-Martinez, M.J., Campeau, P.M., Clayton, P.E., Eaton, J.L., Granata, T., Guillén-Navarro, E., Hernando, C., Laverriere, C.E., Liedén, A., Villa-Marcos, O., McEntagart, M., Nordgren, A., Pantaleoni, C., Pebrel-Richard, C., Sarret, C., Sciacca, F.L., Wright, R., Kerr, B., Glasgow, E., Banka, S. (2016) Small 6q16.1 Deletions Encompassing POU3F2 Cause Susceptibility to Obesity and Variable Developmental Delay with Intellectual Disability. American journal of human genetics. 98(2):363-72

Liu, H., Tang, S., Zheng, X., Zhu, Y., Ma, Z., Liu, C., Hecker, M., Saunders, D.M., Giesy, J.P., Zhang, X., Yu, H. (2015) Bioaccumulation, biotransformation and toxicity of BDE-47, 6-OH-BDE-47 and 6-MeO-BDE-47 in early life-stages of zebrafish (Danio rerio). Environmental science & technology. 49(3):1823-33

Wincent, E., Jonsson, M., Bottai, M., Lundstedt, S., Dreij, K. (2015) Aryl hydrocarbon receptor activation and developmental toxicity in zebrafish in response to soil extracts containing unsubstituted and oxygenated PAHs. Environmental science & technology. 49(6):3869-77

Xu, T., Wang, Q., Shi, Q., Fang, Q., Guo, Y., Zhou, B. (2015) Bioconcentration, metabolism and alterations of thyroid hormones of Tris(1,3-dichloro-2-propyl) phosphate (TDCPP) in Zebrafish. Environmental Toxicology and Pharmacology. 40:581-586

Faltermann, S., Zucchi, S., Kohler, E., Blom, J.F., Pernthaler, J., Fent, K. (2014) Molecular effects of the cyanobacterial toxin cyanopeptolin (CP1020) occurring in algal blooms: global transcriptome analysis in zebrafish embryos. Aquatic toxicology (Amsterdam, Netherlands). 149:33-9

Li, M., Wang, X., Zhu, J., Zhu, S., Hu, X., Zhu, C., Guo, X., Yu, Z., Han, S. (2014) Toxic effects of polychlorinated biphenyls on cardiac development in zebrafish. Molecular biology reports. 41(12):7973-83

Fraccalvieri, D., Soshilov, A.A., Karchner, S.I., Franks, D.G., Pandini, A., Bonati, L., Hahn, M.E., and Denison, M.S. (2013) Comparative Analysis of Homology Models of the Ah Receptor Ligand Binding Domain: Verification of Structure–Function Predictions by Site-Directed Mutagenesis of a Nonfunctional Receptor. Biochemistry. 52(4):714-725

Liu, C., Wang, Q., Liang, K., Liu, J., Zhou, B., Zhang, X., Liu, H., Giesy, J.P., and Yu, H. (2013) Effects of tris(1,3-dichloro-2-propyl) phosphate and triphenyl phosphate on receptor-associated mRNA expression in zebrafish embryos/larvae. Aquatic toxicology (Amsterdam, Netherlands). 128-129C:147-157

Varshney, G.K., Lu, J., Gildea, D., Huang, H., Pei, W., Yang, Z., Huang, S.C., Schoenfeld, D.S., Pho, N., Casero, D., Hirase, T., Mosbrook-Davis, D.M., Zhang, S., Jao, L.E., Zhang, B., Woods, I.G., Zimmerman, S., Schier, A.F., Wolfsberg, T., Pellegrini, M., Burgess, S.M., and Lin, S. (2013) A large-scale zebrafish gene knockout resource for the genome-wide study of gene function. Genome research. 23(4):727-735

Timme-Laragy, A.R., Karchner, S.I., Franks, D.G., Jenny, M.J., Harbeitner, R.C., Goldstone, J.V., McArthur, A.G., and Hahn, M.E. (2012) Nrf2b: novel zebrafish paralog of the oxidant-responsive transcription factor NF-E2-related factor 2 (NRF2). The Journal of biological chemistry. 287(7):4609-4627

Behrendt, L., Jönsson, M.E., Goldstone, J.V., and Stegeman, J.J. (2010) Induction of cytochrome P450 1 genes and stress response genes in developing zebrafish exposed to ultraviolet radiation. Aquatic toxicology (Amsterdam, Netherlands). 98(1):74-82

Jönsson, M.E., Franks, D.G., Woodin, B.R., Jenny, M.J., Garrick, R.A., Behrendt, L., Hahn, M.E., and Stegeman, J.J. (2009) The tryptophan photoproduct 6-formylindolo[3,2-b]carbazole (FICZ) binds multiple AHRs and induces multiple CYP1 genes via AHR2 in zebrafish. Chemico-biological interactions. 181(3):447-454

Wang, Y., Chen, K., Yao, Q., Zheng, X., and Yang, Z. (2009) Phylogenetic Analysis of Zebrafish Basic Helix-Loop-Helix Transcription Factors. Journal of molecular evolution. 68(6):629-640

Hsieh, C.S., Ko, C.Y., Chen, S.Y., Liu, T.M., Wu, J.S., Hu, C.H., and Sun, C.K. (2008) In vivo long-term continuous observation of gene expression in zebrafish embryo nerve systems by using harmonic generation microscopy and morphant technology. Journal of Biomedical Optics. 13(6):064041

Jönsson, M.E., Jenny, M.J., Woodin, B.R., Hahn, M.E., and Stegeman, J.J. (2007) Role of AHR2 in the Expression of Novel Cytochrome P450 1 Family Genes, Cell Cycle Genes, and Morphological Defects in Developing Zebrafish Exposed to 3,3',4,4',5-pentachlorobiphenyl or 2,3,7,8-tetrachlorodibenzo-p-dioxin. Toxicological sciences : an official journal of the Society of Toxicology. 100(1):180-193

Antkiewicz, D.S., Peterson, R.E., and Heideman, W. (2006) Blocking Expression of AHR2 and ARNT1 in Zebrafish Larvae Protects Against Cardiac Toxicity of 2,3,7,8-Tetrachlorodibenzo-p-dioxin. Toxicological sciences : an official journal of the Society of Toxicology. 94(1):175-182

Mathew, L.K., Andreasen, E.A., and Tanguay, R.L. (2006) AHR Activation Inhibits Regenerative Growth. Molecular pharmacology. 69(1):257-265

Evans, B.R., Karchner, S.I., Franks, D.G., and Hahn, M.E. (2005) Duplicate aryl hydrocarbon receptor repressor genes (ahrr1 and ahrr2) in the zebrafish Danio rerio: Structure, function, evolution, and AHR-dependent regulation in vivo. Archives of biochemistry and biophysics. 441(2):151-167

Amsterdam, A., Nissen, R.M., Sun, Z., Swindell, E., Farrington, S., and Hopkins, N. (2004) Identification of 315 genes essential for early zebrafish development. Proceedings of the National Academy of Sciences of the United States of America. 101(35):12792-12797

Prasch, A.L., Heideman, W., and Peterson, R.E. (2004) ARNT2 Is Not Required for TCDD Developmental Toxicity in Zebrafish. Toxicological sciences : an official journal of the Society of Toxicology. 82(1):250-258

Golling, G., Amsterdam, A., Sun, Z., Antonelli, M., Maldonado, E., Chen, W., Burgess, S., Haldi, M., Artzt, K., Farrington, S., Lin, S.Y., Nissen, R.M., and Hopkins, N. (2002) Insertional mutagenesis in zebrafish rapidly identifies genes essential for early vertebrate development. Nature Genetics. 31(2):135-140

Powell, W.H. and Hahn, M.E. (2000) The evolution of aryl hydrocarbon signaling proteins: diversity of ARNT isoforms among fish species. Marine Environmental Research. 50(1-5):39-44

Wang, W.D., Wu, J.C., Hsu, H.J., Kong, Z.L., and Hu, C.H. (2000) Overexpression of a zebrafish ARNT2-like factor represses CYP1A transcription in ZLE cells. Marine biotechnology (New York, N.Y.). 2(4):376-386