Research
Search
Genes / Clones
Expression
Mutants / Tg
Antibodies
Anatomy / GO / Human Disease / Chemical
Publications
Data Mining
Downloads
Data Model
AllianceMine
BioMart
Genomics
BLAST
ZFIN
Ensembl
NCBI
UCSC
Genome Browsers
ZFIN
Ensembl
Vega
GRC
UCSC
NCBI
Resources
Zebrafish Genomics
Other Genome Databases
Resources
General
The Zebrafish Book
Protocol Wiki
Antibody Wiki
Anatomy Atlases
Resources for Students and Educators
Zebrafish Programs
ZF-Health
Husbandry Resources
More...
Resource Centers
Zebrafish International Resource Center (ZIRC)
China Zebrafish Resource Center (CZRC)
European Zebrafish Resource Center (EZRC)
Community
Announcements
News
Meetings
Jobs
Alliance Community Forum
Search
People
Labs
Companies
Societies
International Zebrafish Society (IZFS)
Zebrafish Disease Models Society (ZDMS)
Genetics Society of America (GSA)
Zebrafish Husbandry Association
Support
Nomenclature
Nomenclature Conventions
Line Designations
Wild-Type Lines
Submit a Proposed Gene Name
Submit a Proposed Mutant/Tg Line Name
Publications
Guidelines for Authors
Zebrashare
Citing ZFIN
Using ZFIN
Help & Tips
Glossary
Single Box Search Help
Submit Data
Terms of Use
About Us
About ZFIN
Contact Information
Statistics
Committees
Jobs at ZFIN
Sign In
ZFIN ID:
ZDB-GENE-000629-1
CITATIONS
(105 total)
Gene Name:
ribosomal protein, large, P0
Gene Symbol:
rplp0
Ahi, E.P., Brunel, M., Tsakoumis, E., Chen, J., Schmitz, M. (2022) Appetite regulating genes in zebrafish gut; a gene expression study. PLoS One. 17:e0255201
Basili, D., Lutfi, E., Falcinelli, S., Balbuena-Pecino, S., Navarro, I., Bertolucci, C., Capilla, E., Carnevali, O. (2019) Photoperiod Manipulation Affects Transcriptional Profile of Genes Related to Lipid Metabolism and Apoptosis in Zebrafish (Danio rerio) Larvae: Potential Roles of Gut Microbiota. Microbial ecology. 79(4):933-946
Bayés, À., Collins, M.O., Reig-Viader, R., Gou, G., Goulding, D., Izquierdo, A., Choudhary, J.S., Emes, R.D., Grant, S.G. (2017) Evolution of complexity in the zebrafish synapse proteome. Nature communications. 8:14613
Chemello, G., Randazzo, B., Zarantoniello, M., Fifi, A.P., Aversa, S., Ballarin, C., Radaelli, G., Magro, M., Olivotto, I. (2019) Safety assessment of antibiotic administration by magnetic nanoparticles in in vitro zebrafish liver and intestine cultures. Comparative biochemistry and physiology. Toxicology & pharmacology : CBP. 224:108559
Chernyavskaya, Y., Mudbhary, R., Tokarz, D., Jacob, V., Gopinath, S., Zhang, C., Sun, X., Wang, S., Magnani, E., Madakashira, B.P., Yoder, J.A., Hoshida, Y., Sadler, K.C. (2017) Loss of DNA methylation in zebrafish embryos activates retrotransposons to trigger antiviral signaling. Development (Cambridge, England). 144(16):2925-2939
Chinchilla, B., Gomez-Casado, E. (2017) Identification of the functional regions of the viral haemorrhagic septicaemia virus (VHSV) NV protein: Variants that improve function. Fish & shellfish immunology. 70:343-350
Chuang, L.S., Morrison, J., Hsu, N.Y., Labrias, P.R., Nayar, S., Chen, E., Villaverde, N., Facey, J.A., Boschetti, G., Giri, M., Castillo-Martin, M., Thin, T.H., Sharma, Y., Chu, J., Cho, J.H. (2019) Zebrafish modeling of intestinal injury, bacterial exposures, and medications defines epithelial
in vivo
responses relevant to human inflammatory bowel disease. Disease models & mechanisms. 12(8):
Cosme, M., Lister, A., Kraak, G.V. (2015) Inhibition of Spawning in Zebrafish (Danio rerio): Adverse Outcome Pathways of Quinacrine and Ethinylestradiol. General and comparative endocrinology. 219:89-101
Cruz-Garcia, L., Schlegel, A. (2014) Lxr-driven enterocyte lipid droplet formation delays transport of ingested lipids. Journal of Lipid Research. 55(9):1944-58
Delaney, P., Ramdas Nair, A., Palmer, C., Khan, N., Sadler, K.C. (2020) Arsenic induced redox imbalance triggers the unfolded protein response in the liver of zebrafish. Toxicology and applied pharmacology. 409:115307
DeRossi, C., Vacaru, A., Rafiq, R., Cinaroglu, A., Imrie, D., Nayar, S., Baryshnikova, A., Milev, M.P., Stanga, D., Kadakia, D., Gao, N., Chu, J., Freeze, H.H., Lehrman, M.A., Sacher, M., Sadler, K.C. (2016) trappc11 is required for protein glycosylation in zebrafish and humans. Molecular biology of the cell. 27(8):1220-34
Donizetti, A., Fiengo, M., Del Gaudio, R., Iazzetti, G., Pariante, P., Minucci, S., Aniello, F. (2015) Expression pattern of zebrafish rxfp2 homologue genes during embryonic development. Journal of experimental zoology. Part B, Molecular and developmental evolution. 324(7):605-13
Donizetti, A., Fiengo, M., Iazzetti, G., Del Gaudio, R., Di Giaimo, R., Pariante, P., Minucci, S., Aniello, F. (2015) Expression analysis of five zebrafish rxfp3 homologues reveals evolutionary conservation of gene expression pattern. Journal of experimental zoology. Part B, Molecular and developmental evolution. 324(1):22-9
Elkon, R., Milon, B., Morrison, L., Shah, M., Vijayakumar, S., Racherla, M., Leitch, C.C., Silipino, L., Hadi, S., Weiss-Gayet, M., Barras, E., Schmid, C.D., Ait-Lounis, A., Barnes, A., Song, Y., Eisenman, D.J., Eliyahu, E., Frolenkov, G.I., Strome, S.E., Durand, B., Zaghloul, N.A., Jones, S.M., Reith, W., Hertzano, R. (2015) RFX transcription factors are essential for hearing in mice. Nature communications. 6:8549
Encinas, P., Garcia-Valtanen, P., Chinchilla, B., Gomez-Casado, E., Estepa, A., and Coll, J. (2013) Identification of Multipath Genes Differentially Expressed in Pathway-Targeted Microarrays in Zebrafish Infected and Surviving Spring Viremia Carp Virus (SVCV) Suggest Preventive Drug Candidates. PLoS One. 8(9):e73553
Facchinello, N., Tarifeño-Saldivia, E., Grisan, E., Schiavone, M., Peron, M., Mongera, A., Ek, O., Schmitner, N., Meyer, D., Peers, B., Tiso, N., Argenton, F. (2017) Tcf7l2 plays pleiotropic roles in the control of glucose homeostasis, pancreas morphology, vascularization and regeneration. Scientific Reports. 7:9605
Falcinelli, S., Picchietti, S., Rodiles, A., Cossignani, L., Merrifield, D.L., Taddei, A.R., Maradonna, F., Olivotto, I., Gioacchini, G., Carnevali, O. (2015) Lactobacillus rhamnosus lowers zebrafish lipid content by changing gut microbiota and host transcription of genes involved in lipid metabolism. Scientific Reports. 5:9336
Falcinelli, S., Randazzo, B., Vargas Abundez, J.A., Cangiotti, G., Olivotto, I., and Carnevali, O. (2018) Kluyveromyces fragilis RNA extract supplementation promotes growth, modulates stress and inflammatory response in zebrafish. Aquaculture research. 49(4):1521-1534
Fiengo, M., Donizetti, A., Del Gaudio, R., Minucci, S., and Aniello, F. (2012) Characterization, cDNA cloning and expression pattern of relaxin gene during embryogenesis of Danio rerio. Development, growth & differentiation. 54(5):579-587
Forner-Piquer, I., Maradonna, F., Gioacchini, G., Santangeli, S., Allarà, M., Piscitelli, F., Habibi, H.R., Di Marzo, V., Carnevali, O. (2017) Dose - specific effects of Di-isononyl phthalate on the endocannabinoid system and on liver of female zebrafish. Endocrinology. 158(10):3462-3476
Forner-Piquer, I., Santangeli, S., Maradonna, F., Rabbito, A., Piscitelli, F., Habibi, H.R., Di Marzo, V., Carnevali, O. (2018) Disruption of the gonadal endocannabinoid system in zebrafish exposed to diisononyl phthalate. Environmental pollution (Barking, Essex : 1987). 241:1-8
Gioacchini, G., Valle, L.D., Benato, F., Fimia, G.M., Nardacci, R., Ciccosanti, F., Piacentini, M., Borini, A., and Carnevali, O. (2013) Interplay between autophagy and apoptosis in the development of Danio rerio follicles and the effects of a probiotic. Reproduction, fertility, and development. 25(8):1115-1125
Guo, Y., Ma, L., Cristofanilli, M., Hart, R.P., Hao, A., and Schachner, M. (2011) Transcription factor Sox11b is involved in spinal cord regeneration in adult zebrafish. Neuroscience. 172:329-341
He, W.X., Wu, M., Liu, Z., Li, Z., Wang, Y., Zhou, J., Yu, P., Zhang, X.J., Zhou, L., Gui, J.F. (2018) Oocyte-specific maternal Slbp2 is required for replication-dependent histone storage and early nuclear cleavage in zebrafish oogenesis and embryogenesis. RNA (New York, N.Y.). 24(12):1738-1748
Howarth, D.L., Lindtner, C., Vacaru, A.M., Sachidanandam, R., Tsedensodnom, O., Vasilkova, T., Buettner, C., Sadler, K.C. (2014) Activating transcription factor 6 is necessary and sufficient for alcoholic Fatty liver disease in zebrafish. PLoS Genetics. 10:e1004335
Howarth, D.L., Vacaru, A.M., Tsedensodnom, O., Mormone, E., Nieto, N., Costantini, L.M., Snapp, E.L., and Sadler, K.C. (2012) Alcohol Disrupts Endoplasmic Reticulum Function and Protein Secretion in Hepatocytes. Alcoholism, clinical and experimental research. 36(1):14-23
Howarth, D.L., Yin, C., Yeh, K., and Sadler, K.C. (2013) Defining hepatic dysfunction parameters in two models of Fatty liver disease in zebrafish larvae. Zebrafish. 10(2):199-210
Imrie, D., and Sadler, K.C. (2010) White adipose tissue development in zebrafish is regulated by both developmental time and fish size. Developmental Dynamics : an official publication of the American Association of Anatomists. 239(11):3013-3023
Inglesfield, S., Jasiulewicz, A., Hopwood, M., Tyrrell, J., Youlden, G., Mazon-Moya, M., Millington, O.R., Mostowy, S., Jabbari, S., Voelz, K. (2018) Robust Phagocyte Recruitment Controls the Opportunistic Fungal Pathogen
Mucor circinelloides
in Innate Granulomas
In Vivo
.. mBio. 9(2)
Ings, J.S., and Van Der Kraak, G.J. (2006) Characterization of the mRNA expression of StAR and steroidogenic enzymes in zebrafish ovarian follicles. Molecular reproduction and development. 73(8):943-954
Ju, B., Xu, Y., He, J., Liao, J., Yan, T., Hew, C.L., Lam, T.J., and Gong, Z.Y. (1999) Faithful expression of green fluorescent protein (GFP) in transgenic zebrafish embryos under control of zebrafish gene promoters. Developmental genetics. 25(2):158-167
Kim, J.E., Min, S.K., Hong, J.M., Kim, K.H., Han, S.J., Yim, J.H., Park, H., Kim, I.C. (2020) Anti-inflammatory effects of methanol extracts from the Antarctic lichen, Amandinea sp. in LPS-stimulated raw 264.7 macrophages and zebrafish. Fish & shellfish immunology. 107(Pt A):301-308
Kolmakov, N.N., Kube, M., Reinhardt, R., and Canario, A.V. (2008) Analysis of the goldfish Carassius auratus olfactory epithelium transcriptome reveals the presence of numerous non-olfactory GPCR and putative receptors for progestin pheromones. BMC Genomics. 9:429
Kwon, O.K., Kim, S.J., Lee, S. (2018) First profiling of lysine crotonylation of myofilament proteins and ribosomal proteins in zebrafish embryos. Scientific Reports. 8:3652
Lai, Y., Zhou, C., Huang, P., Dong, Z., Mo, C., Xie, L., Lin, H., Zhou, Z., Deng, G., Liu, Y., Chen, Y., Huang, S., Wu, Z., Sun, X., Gao, L., Lv, Z. (2018) Polydatin alleviated alcoholic liver injury in zebrafish larvae through ameliorating lipid metabolism and oxidative stress. Journal of Pharmacological Sciences. 138(1):46-53
Lanes, C.F.C., Pedron, F.A., Bergamin, G.T., Bitencourt, A.L., Dorneles, B.E.R., Villanova, J.C.V., Dias, K.C., Riolo, K., Oliva, S., Savastano, D., Giannetto, A. (2021) Black Soldier Fly (
Hermetia illucens
) Larvae and Prepupae Defatted Meals in Diets for Zebrafish (
Danio rerio
). Animals : an open access journal from MDPI. 11(3):
Li, Q., Wu, L., Wang, G., Zheng, F., Sun, J., Zhang, Y., Li, Z., Li, L., Sun, B. (2024) Inhibitory Effects of
Jiuzao
Polysaccharides on Alcoholic Fatty Liver Formation in Zebrafish Larvae and Their Regulatory Impact on Intestinal Microbiota. Foods (Basel, Switzerland). 13(2):
Li, Z., Zheng, W., Wang, Z., Zeng, Z., Zhan, H., Li, C., Zhou, L., Yan, C., Spitsbergen, J.M., and Gong, Z. (2013) A transgenic zebrafish liver tumor model with inducible Myc expression reveals conserved Myc signatures with mammalian liver tumors. Disease models & mechanisms. 427(1):223-226
Lin, H., Zhou, Z., Zhong, W., Huang, P., Ma, N., Zhang, Y., Zhou, C., Lai, Y., Huang, S., An, H., Sun, X., Gao, L., Lv, Z. (2017) Naringenin inhibits alcoholic injury by improving lipid metabolism and reducing apoptosis in zebrafish larvae. Oncology reports. 38(5):2877-2884
Lin, J.N., Chang, L.L., Lai, C.H., Lin, K.J., Lin, M.F., Yang, C.H., Lin, H.H., Chen, Y.H. (2015) Development of an Animal Model for Alcoholic Liver Disease in Zebrafish. Zebrafish. 12(4):271-80
Linney, E., Dobbs-McAuliffe, B., Sajadi, H., and Malek, R.L. (2004) Microarray gene expression profiling during the segmentation phase of zebrafish development. Comparative biochemistry and physiology. Toxicology & pharmacology : CBP. 138(3):351-362
Liu, H., Fu, R., Zhang, Y., Mao, L., Zhu, L., Zhang, L., Liu, X., Jiang, H. (2023) Integrate transcriptomic and metabolomic analysis reveals the underlying mechanisms of behavioral disorders in zebrafish (Danio rerio) induced by imidacloprid. The Science of the total environment. 870:161541
Liu, L., Xu, Y., Xu, L., Wang, J., Wu, W., Xu, L., Yan, Y. (2015) Analysis of differentially expressed proteins in zebrafish (Danio rerio) embryos exposed to chlorpyrifos. Comparative biochemistry and physiology. Toxicology & pharmacology : CBP. 167C:183-189
Liu, P.H., Shah, R.B., Li, Y., Arora, A., Ung, P.M., Raman, R., Gorbatenko, A., Kozono, S., Zhou, X.Z., Brechin, V., Barbaro, J.M., Thompson, R., White, R.M., Aguirre-Ghiso, J.A., Heymach, J.V., Lu, K.P., Silva, J.M., Panageas, K.S., Schlessinger, A., Maki, R.G., Skinner, H.D., de Stanchina, E., Sidi, S. (2019) An IRAK1-PIN1 signalling axis drives intrinsic tumour resistance to radiation therapy. Nature cell biology. 21(2):203-213
Liu, Y.S., Yuan, M.H., Zhang, C.Y., Liu, H.M., Liu, J.R., Wei, A.L., Ye, Q., Zeng, B., Li, M.F., Guo, Y.P., Guo, L. (2020) Puerariae Lobatae radix flavonoids and puerarin alleviate alcoholic liver injury in zebrafish by regulating alcohol and lipid metabolism. Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie. 134:111121
Lu, H., Toh, M.T., Narasimhan, V., Thamilselvam, S.K., Choksi, S.P., Roy, S. (2015) A function for the Joubert syndrome protein Arl13b in ciliary membrane extension and ciliary length regulation. Developmental Biology. 397(2):225-36
Ma, L., Shen, Y.Q., Khatri, H.P., Schachner, M. (2014) The asparaginyl endopeptidase legumain is essential for functional recovery after spinal cord injury in adult zebrafish. PLoS One. 9:e95098
Ma, L., Yu, Y.M., Guo, Y., Hart, R.P., and Schachner, M. (2012) Cysteine- and glycine-rich protein 1a is involved in spinal cord regeneration in adult zebrafish. The European journal of neuroscience. 35(3):353-365
Maffioli, E., Angiulli, E., Nonnis, S., Grassi Scalvini, F., Negri, A., Tedeschi, G., Arisi, I., Frabetti, F., D'Aniello, S., Alleva, E., Cioni, C., Toni, M. (2022) Brain Proteome and Behavioural Analysis in Wild Type, BDNF
+/-
and BDNF
-/-
Adult Zebrafish (
Danio rerio
) Exposed to Two Different Temperatures. International Journal of Molecular Sciences. 23(10)
Maradonna, F., Evangelisti, M., Gioacchini, G., Migliarini, B., Olivotto, I., and Carnevali, O. (2013) Assay of vtg, ERs and PPARs as endpoint for the rapid in vitro screening of the harmful effect of Di-(2-ethylhexyl)-phthalate (DEHP) and phthalic acid (PA) in zebrafish primary hepatocyte cultures. Toxicology in vitro : an international journal published in association with BIBRA. 27(1):84-91
Maradonna, F., Gioacchini, G., Falcinelli, S., Bertotto, D., Radaelli, G., Olivotto, I., and Carnevali, O. (2013) Probiotic Supplementation Promotes Calcification inDanio rerio Larvae: A Molecular Study. PLoS One. 8(12):e83155
Muire, P.J., Hanson, L.A., Petrie-Hanson, L. (2025) Rapid Natural Killer Cell Gene Responses, Generated by TLR Ligand-Induced Trained Immunity, Provide Protection to Bacterial Infection in
rag1
-/-
Mutant Zebrafish (
Danio rerio
). International Journal of Molecular Sciences. 26:
Muire, P.J., Hanson, L.A., Wills, R., Petrie-Hanson, L. (2017) Differential gene expression following TLR stimulation in rag1-/- mutant zebrafish tissues and morphological descriptions of lymphocyte-like cell populations. PLoS One. 12:e0184077
Nussbaum, J.M., Liu, L.J., Hasan, S.A., Schaub, M., McClendon, A., Stainier, D.Y., and Sakaguchi, T.F. (2013) Homeostatic generation of reactive oxygen species protects the zebrafish liver from steatosis. Hepatology (Baltimore, Md.). 58(4):1326-1338
Ozbudak, E.M., Tassy, O., and Pourquié, O. (2010) Spatiotemporal compartmentalization of key physiological processes during muscle precursor differentiation. Proceedings of the National Academy of Sciences of the United States of America. 107(9):4224-4229
Passeri, M.J., Cinaroglu, A., Gao, C., and Sadler, K.C. (2009) Hepatic steatosis in response to acute alcohol exposure in zebrafish requires sterol regulatory element binding protein activation. Hepatology (Baltimore, Md.). 49(2):443-452
Pessina, A., Di Vincenzo, M., Maradonna, F., Marchegiani, F., Olivieri, F., Randazzo, B., Gioacchini, G., Carnevali, O. (2021) Polydatin Beneficial Effects in Zebrafish Larvae Undergoing Multiple Stress Types. International Journal of Environmental Research and Public Health. 18(3):
Roesner, A., Hankeln, T., and Burmester, T. (2006) Hypoxia induces a complex response of globin expression in zebrafish (Danio rerio). The Journal of experimental biology. 209(11):2129-2137
Santangeli, S., Consales, C., Pacchierotti, F., Habibi, H.R., Carnevali, O. (2019) Transgenerational effects of BPA on female reproduction. The Science of the total environment. 685:1294-1305
Santangeli, S., Maradonna, F., Gioacchini, G., Cobellis, G., Piccinetti, C.C., Dalla Valle, L., Carnevali, O. (2016) BPA-Induced Deregulation Of Epigenetic Patterns: Effects On Female Zebrafish Reproduction. Scientific Reports. 6:21982
Santangeli, S., Maradonna, F., Zanardini, M., Notarstefano, V., Gioacchini, G., Forner-Piquer, I., Habibi, H., Carnevali, O. (2017) Effects of diisononyl phthalate on Danio rerio reproduction. Environmental pollution (Barking, Essex : 1987). 231:1051-1062
Sojan, J.M., Raman, R., Muller, M., Carnevali, O., Renn, J. (2022) Probiotics Enhance Bone Growth and Rescue BMP Inhibition: New Transgenic Zebrafish Lines to Study Bone Health. International Journal of Molecular Sciences. 23(9)
Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J., and Marra,M.A. (2002) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proceedings of the National Academy of Sciences of the United States of America. 99(26):16899-903
Tiedke, J., Cubuk, C., and Burmester, T. (2013) Environmental acidification triggers oxidative stress and enhances globin expression in zebrafish gills. Biochemical and Biophysical Research Communications. 441(3):624-9
Tiedke, J., Gerlach, F., Mitz, S.A., Hankeln, T., and Burmester, T. (2011) Ontogeny of globin expression in zebrafish (Danio rerio). Journal of comparative physiology. B, Biochemical, systemic, and environmental physiology. 181(8):1011-21
Tsakoumis, E., Ahi, E.P., Schmitz, M. (2022) Impaired leptin signaling causes subfertility in female zebrafish. Molecular and Cellular Endocrinology. 546:111595
Tsedensodnom, O., Vacaru, A.M., Howarth, D.L., Yin, C., and Sadler, K.C. (2013) Ethanol metabolism and oxidative stress are required for unfolded protein response activation and steatosis in zebrafish with alcoholic liver disease. Disease models & mechanisms. 6(5):1213-26
Tseng, L.C., Zhang, C., Cheng, C.M., Xu, H., Hsu, C.H., Jiang, Y.J. (2014) New classes of mind bomb-interacting proteins identified from yeast two-hybrid screens. PLoS One. 9:e93394
Uechi, T., Nakajima, Y., Nakao, A., Torihara, H., Chakraborty, A., Inoue, K., and Kenmochi, N. (2006) Ribosomal protein gene knockdown causes developmental defects in zebrafish. PLoS One. 1(1):e37
van der Helm, D., Groenewoud, A., de Jonge-Muller, E.S.M., Barnhoorn, M.C., Schoonderwoerd, M.J.A., Coenraad, M.J., Hawinkels, L.J.A.C., Snaar-Jagalska, B.E., van Hoek, B., Verspaget, H.W. (2018) Mesenchymal stromal cells prevent progression of liver fibrosis in a novel zebrafish embryo model. Scientific Reports. 8:16005
Venditti, M., Donizetti, A., Fiengo, M., Fasano, C., Santillo, A., Aniello, F., Minucci, S. (2018) Temporal and spatial expression of insulin-like peptide (insl5a and insl5b) paralog genes during the embryogenesis of Danio rerio. Journal of experimental zoology. Part B, Molecular and developmental evolution. 330(1):33-40
Vihtelic, T.S., Fadool, J.M., Gao, J., Thornton, K.A., Hyde, D.R., and Wistow, G. (2005) Expressed sequence tag analysis of zebrafish eye tissues for NEIBank. Molecular Vision. 11:1083-1100
Vojtech, L.N., Sanders, G.E., Conway, C., Ostland, V., and Hansen, J.D. (2009) Host immune response and acute disease in a zebrafish model of Francisella pathogenesis. Infection and Immunity. 77(2):914-925
Wagner, K.D., Ying, Y., Leong, W., Jiang, J., Hu, X., Chen, Y., Michiels, J.F., Lu, Y., Gilson, E., Wagner, N., Ye, J. (2017) The differential spatiotemporal expression pattern of shelterin genes throughout lifespan. Aging. 9(4):1219-1232
Woods, I.G., Wilson, C., Friedlander, B., Chang, P., Reyes, D.K., Nix, R., Kelly, P.D., Chu, F., Postlethwait, J.H., and Talbot, W.S. (2005) The zebrafish gene map defines ancestral vertebrate chromosomes. Genome research. 15(9):1307-1314
Xu, Y.F., He, J.Y., Wang, X.K., Lim, T.M., and Gong, Z.Y. (2000) Asynchronous activation of 10 muscle-specific protein (MSP) genes during zebrafish somitogenesis. Developmental Dynamics : an official publication of the American Association of Anatomists. 219(2):201-215
Zarantoniello, M., Randazzo, B., Truzzi, C., Giorgini, E., Marcellucci, C., Vargas-Abúndez, J.A., Zimbelli, A., Annibaldi, A., Parisi, G., Tulli, F., Riolo, P., Olivotto, I. (2019) A six-months study on Black Soldier Fly (Hermetia illucens) based diets in zebrafish. Scientific Reports. 9:8598
Zhang, C., Ellis, J.L., Yin, C. (2016) Inhibition of vascular endothelial growth factor signaling facilitates liver repair from acute ethanol-induced injury in zebrafish. Disease models & mechanisms. 9(11):1383-1396
Zhao, X., Monson, C., Gao, C., Gouon-Evans, V., Matsumoto, N., Sadler, K.C., and Friedman, S.L. (2010) Klf6/copeb is required for hepatic outgrowth in zebrafish and for hepatocyte specification in mouse ES cells. Developmental Biology. 344(1):79-93
Zheng, W., Xu, H., Lam, S.H., Luo, H., Karuturi, R.K., and Gong, Z. (2013) Transcriptomic analyses of sexual dimorphism of the zebrafish liver and the effect of sex hormones. PLoS One. 8(1):e53562
Zhou, C., Lai, Y., Huang, P., Xie, L., Lin, H., Zhou, Z., Mo, C., Deng, G., Yan, W., Gao, Z., Huang, S., Chen, Y., Sun, X., Lv, Z., Gao, L. (2018) Naringin attenuates alcoholic liver injury by reducing lipid accumulation and oxidative stress. Life sciences. 216:305-312
Zhou, F., Narasimhan, V., Shboul, M., Chong, Y.L., Reversade, B., Roy, S. (2015) Gmnc Is a Master Regulator of the Multiciliated Cell Differentiation Program. Current biology : CB. 25(24):3267-73
Zhou, Z., Zhong, W., Lin, H., Huang, P., Ma, N., Zhang, Y., Zhou, C., Lai, Y., Huang, S., Huang, S., Gao, L., Lv, Z. (2017) Hesperidin Protects against Acute Alcoholic Injury through Improving Lipid Metabolism and Cell Damage in Zebrafish Larvae. Evidence-based complementary and alternative medicine : eCAM. 2017:7282653
Muire, P.J., Hanson, L.A., Petrie-Hanson, L. (2025) Rapid Natural Killer Cell Gene Responses, Generated by TLR Ligand-Induced Trained Immunity, Provide Protection to Bacterial Infection in
rag1
-/-
Mutant Zebrafish (
Danio rerio
). International Journal of Molecular Sciences. 26:
Li, Q., Wu, L., Wang, G., Zheng, F., Sun, J., Zhang, Y., Li, Z., Li, L., Sun, B. (2024) Inhibitory Effects of
Jiuzao
Polysaccharides on Alcoholic Fatty Liver Formation in Zebrafish Larvae and Their Regulatory Impact on Intestinal Microbiota. Foods (Basel, Switzerland). 13(2):
Liu, H., Fu, R., Zhang, Y., Mao, L., Zhu, L., Zhang, L., Liu, X., Jiang, H. (2023) Integrate transcriptomic and metabolomic analysis reveals the underlying mechanisms of behavioral disorders in zebrafish (Danio rerio) induced by imidacloprid. The Science of the total environment. 870:161541
Ahi, E.P., Brunel, M., Tsakoumis, E., Chen, J., Schmitz, M. (2022) Appetite regulating genes in zebrafish gut; a gene expression study. PLoS One. 17:e0255201
Maffioli, E., Angiulli, E., Nonnis, S., Grassi Scalvini, F., Negri, A., Tedeschi, G., Arisi, I., Frabetti, F., D'Aniello, S., Alleva, E., Cioni, C., Toni, M. (2022) Brain Proteome and Behavioural Analysis in Wild Type, BDNF
+/-
and BDNF
-/-
Adult Zebrafish (
Danio rerio
) Exposed to Two Different Temperatures. International Journal of Molecular Sciences. 23(10)
Sojan, J.M., Raman, R., Muller, M., Carnevali, O., Renn, J. (2022) Probiotics Enhance Bone Growth and Rescue BMP Inhibition: New Transgenic Zebrafish Lines to Study Bone Health. International Journal of Molecular Sciences. 23(9)
Tsakoumis, E., Ahi, E.P., Schmitz, M. (2022) Impaired leptin signaling causes subfertility in female zebrafish. Molecular and Cellular Endocrinology. 546:111595
Lanes, C.F.C., Pedron, F.A., Bergamin, G.T., Bitencourt, A.L., Dorneles, B.E.R., Villanova, J.C.V., Dias, K.C., Riolo, K., Oliva, S., Savastano, D., Giannetto, A. (2021) Black Soldier Fly (
Hermetia illucens
) Larvae and Prepupae Defatted Meals in Diets for Zebrafish (
Danio rerio
). Animals : an open access journal from MDPI. 11(3):
Pessina, A., Di Vincenzo, M., Maradonna, F., Marchegiani, F., Olivieri, F., Randazzo, B., Gioacchini, G., Carnevali, O. (2021) Polydatin Beneficial Effects in Zebrafish Larvae Undergoing Multiple Stress Types. International Journal of Environmental Research and Public Health. 18(3):
Delaney, P., Ramdas Nair, A., Palmer, C., Khan, N., Sadler, K.C. (2020) Arsenic induced redox imbalance triggers the unfolded protein response in the liver of zebrafish. Toxicology and applied pharmacology. 409:115307
Kim, J.E., Min, S.K., Hong, J.M., Kim, K.H., Han, S.J., Yim, J.H., Park, H., Kim, I.C. (2020) Anti-inflammatory effects of methanol extracts from the Antarctic lichen, Amandinea sp. in LPS-stimulated raw 264.7 macrophages and zebrafish. Fish & shellfish immunology. 107(Pt A):301-308
Liu, Y.S., Yuan, M.H., Zhang, C.Y., Liu, H.M., Liu, J.R., Wei, A.L., Ye, Q., Zeng, B., Li, M.F., Guo, Y.P., Guo, L. (2020) Puerariae Lobatae radix flavonoids and puerarin alleviate alcoholic liver injury in zebrafish by regulating alcohol and lipid metabolism. Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie. 134:111121
Basili, D., Lutfi, E., Falcinelli, S., Balbuena-Pecino, S., Navarro, I., Bertolucci, C., Capilla, E., Carnevali, O. (2019) Photoperiod Manipulation Affects Transcriptional Profile of Genes Related to Lipid Metabolism and Apoptosis in Zebrafish (Danio rerio) Larvae: Potential Roles of Gut Microbiota. Microbial ecology. 79(4):933-946
Chemello, G., Randazzo, B., Zarantoniello, M., Fifi, A.P., Aversa, S., Ballarin, C., Radaelli, G., Magro, M., Olivotto, I. (2019) Safety assessment of antibiotic administration by magnetic nanoparticles in in vitro zebrafish liver and intestine cultures. Comparative biochemistry and physiology. Toxicology & pharmacology : CBP. 224:108559
Chuang, L.S., Morrison, J., Hsu, N.Y., Labrias, P.R., Nayar, S., Chen, E., Villaverde, N., Facey, J.A., Boschetti, G., Giri, M., Castillo-Martin, M., Thin, T.H., Sharma, Y., Chu, J., Cho, J.H. (2019) Zebrafish modeling of intestinal injury, bacterial exposures, and medications defines epithelial
in vivo
responses relevant to human inflammatory bowel disease. Disease models & mechanisms. 12(8):
Liu, P.H., Shah, R.B., Li, Y., Arora, A., Ung, P.M., Raman, R., Gorbatenko, A., Kozono, S., Zhou, X.Z., Brechin, V., Barbaro, J.M., Thompson, R., White, R.M., Aguirre-Ghiso, J.A., Heymach, J.V., Lu, K.P., Silva, J.M., Panageas, K.S., Schlessinger, A., Maki, R.G., Skinner, H.D., de Stanchina, E., Sidi, S. (2019) An IRAK1-PIN1 signalling axis drives intrinsic tumour resistance to radiation therapy. Nature cell biology. 21(2):203-213
Santangeli, S., Consales, C., Pacchierotti, F., Habibi, H.R., Carnevali, O. (2019) Transgenerational effects of BPA on female reproduction. The Science of the total environment. 685:1294-1305
Zarantoniello, M., Randazzo, B., Truzzi, C., Giorgini, E., Marcellucci, C., Vargas-Abúndez, J.A., Zimbelli, A., Annibaldi, A., Parisi, G., Tulli, F., Riolo, P., Olivotto, I. (2019) A six-months study on Black Soldier Fly (Hermetia illucens) based diets in zebrafish. Scientific Reports. 9:8598
Falcinelli, S., Randazzo, B., Vargas Abundez, J.A., Cangiotti, G., Olivotto, I., and Carnevali, O. (2018) Kluyveromyces fragilis RNA extract supplementation promotes growth, modulates stress and inflammatory response in zebrafish. Aquaculture research. 49(4):1521-1534
Forner-Piquer, I., Santangeli, S., Maradonna, F., Rabbito, A., Piscitelli, F., Habibi, H.R., Di Marzo, V., Carnevali, O. (2018) Disruption of the gonadal endocannabinoid system in zebrafish exposed to diisononyl phthalate. Environmental pollution (Barking, Essex : 1987). 241:1-8
He, W.X., Wu, M., Liu, Z., Li, Z., Wang, Y., Zhou, J., Yu, P., Zhang, X.J., Zhou, L., Gui, J.F. (2018) Oocyte-specific maternal Slbp2 is required for replication-dependent histone storage and early nuclear cleavage in zebrafish oogenesis and embryogenesis. RNA (New York, N.Y.). 24(12):1738-1748
Inglesfield, S., Jasiulewicz, A., Hopwood, M., Tyrrell, J., Youlden, G., Mazon-Moya, M., Millington, O.R., Mostowy, S., Jabbari, S., Voelz, K. (2018) Robust Phagocyte Recruitment Controls the Opportunistic Fungal Pathogen
Mucor circinelloides
in Innate Granulomas
In Vivo
.. mBio. 9(2)
Kwon, O.K., Kim, S.J., Lee, S. (2018) First profiling of lysine crotonylation of myofilament proteins and ribosomal proteins in zebrafish embryos. Scientific Reports. 8:3652
Lai, Y., Zhou, C., Huang, P., Dong, Z., Mo, C., Xie, L., Lin, H., Zhou, Z., Deng, G., Liu, Y., Chen, Y., Huang, S., Wu, Z., Sun, X., Gao, L., Lv, Z. (2018) Polydatin alleviated alcoholic liver injury in zebrafish larvae through ameliorating lipid metabolism and oxidative stress. Journal of Pharmacological Sciences. 138(1):46-53
van der Helm, D., Groenewoud, A., de Jonge-Muller, E.S.M., Barnhoorn, M.C., Schoonderwoerd, M.J.A., Coenraad, M.J., Hawinkels, L.J.A.C., Snaar-Jagalska, B.E., van Hoek, B., Verspaget, H.W. (2018) Mesenchymal stromal cells prevent progression of liver fibrosis in a novel zebrafish embryo model. Scientific Reports. 8:16005
Venditti, M., Donizetti, A., Fiengo, M., Fasano, C., Santillo, A., Aniello, F., Minucci, S. (2018) Temporal and spatial expression of insulin-like peptide (insl5a and insl5b) paralog genes during the embryogenesis of Danio rerio. Journal of experimental zoology. Part B, Molecular and developmental evolution. 330(1):33-40
Zhou, C., Lai, Y., Huang, P., Xie, L., Lin, H., Zhou, Z., Mo, C., Deng, G., Yan, W., Gao, Z., Huang, S., Chen, Y., Sun, X., Lv, Z., Gao, L. (2018) Naringin attenuates alcoholic liver injury by reducing lipid accumulation and oxidative stress. Life sciences. 216:305-312
Bayés, À., Collins, M.O., Reig-Viader, R., Gou, G., Goulding, D., Izquierdo, A., Choudhary, J.S., Emes, R.D., Grant, S.G. (2017) Evolution of complexity in the zebrafish synapse proteome. Nature communications. 8:14613
Chernyavskaya, Y., Mudbhary, R., Tokarz, D., Jacob, V., Gopinath, S., Zhang, C., Sun, X., Wang, S., Magnani, E., Madakashira, B.P., Yoder, J.A., Hoshida, Y., Sadler, K.C. (2017) Loss of DNA methylation in zebrafish embryos activates retrotransposons to trigger antiviral signaling. Development (Cambridge, England). 144(16):2925-2939
Chinchilla, B., Gomez-Casado, E. (2017) Identification of the functional regions of the viral haemorrhagic septicaemia virus (VHSV) NV protein: Variants that improve function. Fish & shellfish immunology. 70:343-350
Facchinello, N., Tarifeño-Saldivia, E., Grisan, E., Schiavone, M., Peron, M., Mongera, A., Ek, O., Schmitner, N., Meyer, D., Peers, B., Tiso, N., Argenton, F. (2017) Tcf7l2 plays pleiotropic roles in the control of glucose homeostasis, pancreas morphology, vascularization and regeneration. Scientific Reports. 7:9605
Forner-Piquer, I., Maradonna, F., Gioacchini, G., Santangeli, S., Allarà, M., Piscitelli, F., Habibi, H.R., Di Marzo, V., Carnevali, O. (2017) Dose - specific effects of Di-isononyl phthalate on the endocannabinoid system and on liver of female zebrafish. Endocrinology. 158(10):3462-3476
Lin, H., Zhou, Z., Zhong, W., Huang, P., Ma, N., Zhang, Y., Zhou, C., Lai, Y., Huang, S., An, H., Sun, X., Gao, L., Lv, Z. (2017) Naringenin inhibits alcoholic injury by improving lipid metabolism and reducing apoptosis in zebrafish larvae. Oncology reports. 38(5):2877-2884
Muire, P.J., Hanson, L.A., Wills, R., Petrie-Hanson, L. (2017) Differential gene expression following TLR stimulation in rag1-/- mutant zebrafish tissues and morphological descriptions of lymphocyte-like cell populations. PLoS One. 12:e0184077
Santangeli, S., Maradonna, F., Zanardini, M., Notarstefano, V., Gioacchini, G., Forner-Piquer, I., Habibi, H., Carnevali, O. (2017) Effects of diisononyl phthalate on Danio rerio reproduction. Environmental pollution (Barking, Essex : 1987). 231:1051-1062
Wagner, K.D., Ying, Y., Leong, W., Jiang, J., Hu, X., Chen, Y., Michiels, J.F., Lu, Y., Gilson, E., Wagner, N., Ye, J. (2017) The differential spatiotemporal expression pattern of shelterin genes throughout lifespan. Aging. 9(4):1219-1232
Zhou, Z., Zhong, W., Lin, H., Huang, P., Ma, N., Zhang, Y., Zhou, C., Lai, Y., Huang, S., Huang, S., Gao, L., Lv, Z. (2017) Hesperidin Protects against Acute Alcoholic Injury through Improving Lipid Metabolism and Cell Damage in Zebrafish Larvae. Evidence-based complementary and alternative medicine : eCAM. 2017:7282653
DeRossi, C., Vacaru, A., Rafiq, R., Cinaroglu, A., Imrie, D., Nayar, S., Baryshnikova, A., Milev, M.P., Stanga, D., Kadakia, D., Gao, N., Chu, J., Freeze, H.H., Lehrman, M.A., Sacher, M., Sadler, K.C. (2016) trappc11 is required for protein glycosylation in zebrafish and humans. Molecular biology of the cell. 27(8):1220-34
Santangeli, S., Maradonna, F., Gioacchini, G., Cobellis, G., Piccinetti, C.C., Dalla Valle, L., Carnevali, O. (2016) BPA-Induced Deregulation Of Epigenetic Patterns: Effects On Female Zebrafish Reproduction. Scientific Reports. 6:21982
Zhang, C., Ellis, J.L., Yin, C. (2016) Inhibition of vascular endothelial growth factor signaling facilitates liver repair from acute ethanol-induced injury in zebrafish. Disease models & mechanisms. 9(11):1383-1396
Cosme, M., Lister, A., Kraak, G.V. (2015) Inhibition of Spawning in Zebrafish (Danio rerio): Adverse Outcome Pathways of Quinacrine and Ethinylestradiol. General and comparative endocrinology. 219:89-101
Donizetti, A., Fiengo, M., Del Gaudio, R., Iazzetti, G., Pariante, P., Minucci, S., Aniello, F. (2015) Expression pattern of zebrafish rxfp2 homologue genes during embryonic development. Journal of experimental zoology. Part B, Molecular and developmental evolution. 324(7):605-13
Donizetti, A., Fiengo, M., Iazzetti, G., Del Gaudio, R., Di Giaimo, R., Pariante, P., Minucci, S., Aniello, F. (2015) Expression analysis of five zebrafish rxfp3 homologues reveals evolutionary conservation of gene expression pattern. Journal of experimental zoology. Part B, Molecular and developmental evolution. 324(1):22-9
Elkon, R., Milon, B., Morrison, L., Shah, M., Vijayakumar, S., Racherla, M., Leitch, C.C., Silipino, L., Hadi, S., Weiss-Gayet, M., Barras, E., Schmid, C.D., Ait-Lounis, A., Barnes, A., Song, Y., Eisenman, D.J., Eliyahu, E., Frolenkov, G.I., Strome, S.E., Durand, B., Zaghloul, N.A., Jones, S.M., Reith, W., Hertzano, R. (2015) RFX transcription factors are essential for hearing in mice. Nature communications. 6:8549
Falcinelli, S., Picchietti, S., Rodiles, A., Cossignani, L., Merrifield, D.L., Taddei, A.R., Maradonna, F., Olivotto, I., Gioacchini, G., Carnevali, O. (2015) Lactobacillus rhamnosus lowers zebrafish lipid content by changing gut microbiota and host transcription of genes involved in lipid metabolism. Scientific Reports. 5:9336
Lin, J.N., Chang, L.L., Lai, C.H., Lin, K.J., Lin, M.F., Yang, C.H., Lin, H.H., Chen, Y.H. (2015) Development of an Animal Model for Alcoholic Liver Disease in Zebrafish. Zebrafish. 12(4):271-80
Liu, L., Xu, Y., Xu, L., Wang, J., Wu, W., Xu, L., Yan, Y. (2015) Analysis of differentially expressed proteins in zebrafish (Danio rerio) embryos exposed to chlorpyrifos. Comparative biochemistry and physiology. Toxicology & pharmacology : CBP. 167C:183-189
Lu, H., Toh, M.T., Narasimhan, V., Thamilselvam, S.K., Choksi, S.P., Roy, S. (2015) A function for the Joubert syndrome protein Arl13b in ciliary membrane extension and ciliary length regulation. Developmental Biology. 397(2):225-36
Zhou, F., Narasimhan, V., Shboul, M., Chong, Y.L., Reversade, B., Roy, S. (2015) Gmnc Is a Master Regulator of the Multiciliated Cell Differentiation Program. Current biology : CB. 25(24):3267-73
Cruz-Garcia, L., Schlegel, A. (2014) Lxr-driven enterocyte lipid droplet formation delays transport of ingested lipids. Journal of Lipid Research. 55(9):1944-58
Howarth, D.L., Lindtner, C., Vacaru, A.M., Sachidanandam, R., Tsedensodnom, O., Vasilkova, T., Buettner, C., Sadler, K.C. (2014) Activating transcription factor 6 is necessary and sufficient for alcoholic Fatty liver disease in zebrafish. PLoS Genetics. 10:e1004335
Ma, L., Shen, Y.Q., Khatri, H.P., Schachner, M. (2014) The asparaginyl endopeptidase legumain is essential for functional recovery after spinal cord injury in adult zebrafish. PLoS One. 9:e95098
Tseng, L.C., Zhang, C., Cheng, C.M., Xu, H., Hsu, C.H., Jiang, Y.J. (2014) New classes of mind bomb-interacting proteins identified from yeast two-hybrid screens. PLoS One. 9:e93394
Encinas, P., Garcia-Valtanen, P., Chinchilla, B., Gomez-Casado, E., Estepa, A., and Coll, J. (2013) Identification of Multipath Genes Differentially Expressed in Pathway-Targeted Microarrays in Zebrafish Infected and Surviving Spring Viremia Carp Virus (SVCV) Suggest Preventive Drug Candidates. PLoS One. 8(9):e73553
Gioacchini, G., Valle, L.D., Benato, F., Fimia, G.M., Nardacci, R., Ciccosanti, F., Piacentini, M., Borini, A., and Carnevali, O. (2013) Interplay between autophagy and apoptosis in the development of Danio rerio follicles and the effects of a probiotic. Reproduction, fertility, and development. 25(8):1115-1125
Howarth, D.L., Yin, C., Yeh, K., and Sadler, K.C. (2013) Defining hepatic dysfunction parameters in two models of Fatty liver disease in zebrafish larvae. Zebrafish. 10(2):199-210
Li, Z., Zheng, W., Wang, Z., Zeng, Z., Zhan, H., Li, C., Zhou, L., Yan, C., Spitsbergen, J.M., and Gong, Z. (2013) A transgenic zebrafish liver tumor model with inducible Myc expression reveals conserved Myc signatures with mammalian liver tumors. Disease models & mechanisms. 427(1):223-226
Maradonna, F., Evangelisti, M., Gioacchini, G., Migliarini, B., Olivotto, I., and Carnevali, O. (2013) Assay of vtg, ERs and PPARs as endpoint for the rapid in vitro screening of the harmful effect of Di-(2-ethylhexyl)-phthalate (DEHP) and phthalic acid (PA) in zebrafish primary hepatocyte cultures. Toxicology in vitro : an international journal published in association with BIBRA. 27(1):84-91
Maradonna, F., Gioacchini, G., Falcinelli, S., Bertotto, D., Radaelli, G., Olivotto, I., and Carnevali, O. (2013) Probiotic Supplementation Promotes Calcification inDanio rerio Larvae: A Molecular Study. PLoS One. 8(12):e83155
Nussbaum, J.M., Liu, L.J., Hasan, S.A., Schaub, M., McClendon, A., Stainier, D.Y., and Sakaguchi, T.F. (2013) Homeostatic generation of reactive oxygen species protects the zebrafish liver from steatosis. Hepatology (Baltimore, Md.). 58(4):1326-1338
Tiedke, J., Cubuk, C., and Burmester, T. (2013) Environmental acidification triggers oxidative stress and enhances globin expression in zebrafish gills. Biochemical and Biophysical Research Communications. 441(3):624-9
Tsedensodnom, O., Vacaru, A.M., Howarth, D.L., Yin, C., and Sadler, K.C. (2013) Ethanol metabolism and oxidative stress are required for unfolded protein response activation and steatosis in zebrafish with alcoholic liver disease. Disease models & mechanisms. 6(5):1213-26
Zheng, W., Xu, H., Lam, S.H., Luo, H., Karuturi, R.K., and Gong, Z. (2013) Transcriptomic analyses of sexual dimorphism of the zebrafish liver and the effect of sex hormones. PLoS One. 8(1):e53562
Fiengo, M., Donizetti, A., Del Gaudio, R., Minucci, S., and Aniello, F. (2012) Characterization, cDNA cloning and expression pattern of relaxin gene during embryogenesis of Danio rerio. Development, growth & differentiation. 54(5):579-587
Howarth, D.L., Vacaru, A.M., Tsedensodnom, O., Mormone, E., Nieto, N., Costantini, L.M., Snapp, E.L., and Sadler, K.C. (2012) Alcohol Disrupts Endoplasmic Reticulum Function and Protein Secretion in Hepatocytes. Alcoholism, clinical and experimental research. 36(1):14-23
Ma, L., Yu, Y.M., Guo, Y., Hart, R.P., and Schachner, M. (2012) Cysteine- and glycine-rich protein 1a is involved in spinal cord regeneration in adult zebrafish. The European journal of neuroscience. 35(3):353-365
Guo, Y., Ma, L., Cristofanilli, M., Hart, R.P., Hao, A., and Schachner, M. (2011) Transcription factor Sox11b is involved in spinal cord regeneration in adult zebrafish. Neuroscience. 172:329-341
Tiedke, J., Gerlach, F., Mitz, S.A., Hankeln, T., and Burmester, T. (2011) Ontogeny of globin expression in zebrafish (Danio rerio). Journal of comparative physiology. B, Biochemical, systemic, and environmental physiology. 181(8):1011-21
Imrie, D., and Sadler, K.C. (2010) White adipose tissue development in zebrafish is regulated by both developmental time and fish size. Developmental Dynamics : an official publication of the American Association of Anatomists. 239(11):3013-3023
Ozbudak, E.M., Tassy, O., and Pourquié, O. (2010) Spatiotemporal compartmentalization of key physiological processes during muscle precursor differentiation. Proceedings of the National Academy of Sciences of the United States of America. 107(9):4224-4229
Zhao, X., Monson, C., Gao, C., Gouon-Evans, V., Matsumoto, N., Sadler, K.C., and Friedman, S.L. (2010) Klf6/copeb is required for hepatic outgrowth in zebrafish and for hepatocyte specification in mouse ES cells. Developmental Biology. 344(1):79-93
Passeri, M.J., Cinaroglu, A., Gao, C., and Sadler, K.C. (2009) Hepatic steatosis in response to acute alcohol exposure in zebrafish requires sterol regulatory element binding protein activation. Hepatology (Baltimore, Md.). 49(2):443-452
Vojtech, L.N., Sanders, G.E., Conway, C., Ostland, V., and Hansen, J.D. (2009) Host immune response and acute disease in a zebrafish model of Francisella pathogenesis. Infection and Immunity. 77(2):914-925
Kolmakov, N.N., Kube, M., Reinhardt, R., and Canario, A.V. (2008) Analysis of the goldfish Carassius auratus olfactory epithelium transcriptome reveals the presence of numerous non-olfactory GPCR and putative receptors for progestin pheromones. BMC Genomics. 9:429
Ings, J.S., and Van Der Kraak, G.J. (2006) Characterization of the mRNA expression of StAR and steroidogenic enzymes in zebrafish ovarian follicles. Molecular reproduction and development. 73(8):943-954
Roesner, A., Hankeln, T., and Burmester, T. (2006) Hypoxia induces a complex response of globin expression in zebrafish (Danio rerio). The Journal of experimental biology. 209(11):2129-2137
Uechi, T., Nakajima, Y., Nakao, A., Torihara, H., Chakraborty, A., Inoue, K., and Kenmochi, N. (2006) Ribosomal protein gene knockdown causes developmental defects in zebrafish. PLoS One. 1(1):e37
Vihtelic, T.S., Fadool, J.M., Gao, J., Thornton, K.A., Hyde, D.R., and Wistow, G. (2005) Expressed sequence tag analysis of zebrafish eye tissues for NEIBank. Molecular Vision. 11:1083-1100
Woods, I.G., Wilson, C., Friedlander, B., Chang, P., Reyes, D.K., Nix, R., Kelly, P.D., Chu, F., Postlethwait, J.H., and Talbot, W.S. (2005) The zebrafish gene map defines ancestral vertebrate chromosomes. Genome research. 15(9):1307-1314
Linney, E., Dobbs-McAuliffe, B., Sajadi, H., and Malek, R.L. (2004) Microarray gene expression profiling during the segmentation phase of zebrafish development. Comparative biochemistry and physiology. Toxicology & pharmacology : CBP. 138(3):351-362
Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J., and Marra,M.A. (2002) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proceedings of the National Academy of Sciences of the United States of America. 99(26):16899-903
Xu, Y.F., He, J.Y., Wang, X.K., Lim, T.M., and Gong, Z.Y. (2000) Asynchronous activation of 10 muscle-specific protein (MSP) genes during zebrafish somitogenesis. Developmental Dynamics : an official publication of the American Association of Anatomists. 219(2):201-215
Ju, B., Xu, Y., He, J., Liao, J., Yan, T., Hew, C.L., Lam, T.J., and Gong, Z.Y. (1999) Faithful expression of green fluorescent protein (GFP) in transgenic zebrafish embryos under control of zebrafish gene promoters. Developmental genetics. 25(2):158-167
Additional Citations (22):
Burgess, S., and Lin, S. (2011) Viral Insertion Mutants. ZFIN Direct Data Submission.
Ensembl curators, GOA curators (2006) Automatic transfer of experimentally verified manual GO annotation data to orthologs using Ensembl Compara. Manually curated data.
Gaudet, P., Livstone, M., Thomas, P., The Reference Genome Project (2010) Annotation inferences using phylogenetic trees. Automated Data Submission.
GOA, HGNC, AgBase and UniProtKB curators (2007) Manual transfer of experimentally-verified manual GO annotation data to orthologs by curator judgment of sequence similarity. ZFIN Direct Data Submission.
Rauch, G.J., Lyons, D.A., Middendorf, I., Friedlander, B., Arana, N., Reyes, T., and Talbot, W.S. (2003) Submission and Curation of Gene Expression Data. ZFIN Direct Data Submission.
Thisse, B., Thisse, C. (2004) Fast Release Clones: A High Throughput Expression Analysis. ZFIN Direct Data Submission.
UniProt-GOA (2011) Gene Ontology annotation based on the automatic assignment of UniProtKB Subcellular Location terms in UniProtKB/TrEMBL entries. Manually curated data.
UniProt-GOA (2011) Gene Ontology annotation based on the manual assignment of UniProtKB Subcellular Location terms in UniProtKB/Swiss-Prot entries. Manually curated data.
ZFIN Staff (2006) Curation of Ensembl Database Links. Automated Data Submission.
ZFIN Staff (2003) Computational Sequence to Gene Association in ZFIN. Semi-automated Curation.
ZFIN Staff (2017) Curation of PANTHER Gene IDs. Automated Data Submission.
ZFIN Staff (2003) Curation of VEGA Database Links. Automated Data Submission.
ZFIN Staff (2020) Addition of links from ZFIN to Expression Atlas. Semi-automated Curation.
ZFIN Staff (2004) ZGC Data Curation and Association in ZFIN by ZFIN Staff. Semi-automated Curation.
ZFIN Staff (2002) Scientific Curation. Manually curated data.
ZFIN Staff (2002) Curation of NCBI Gene Data Via Shared RNA Sequence IDs. Automated Data Submission.
ZFIN Staff (2002) Gene Ontology Annotation Through Association of UniProt Keywords with GO Terms. Automated Data Submission.
ZFIN Staff (2013) Semi-automated association of ENSDARG identifiers with ZFIN genes for the ZMP project. Semi-automated Curation.
ZFIN Staff (2002) Gene Ontology Annotation Through Association of InterPro Records with GO Terms. Automated Data Submission.
ZFIN Staff (2007) Microarray Expression to Gene Association in ZFIN. Semi-automated Curation.
ZFIN Staff (2017) Curation of Alliance of Genome Resources Database Links. Automated Data Submission.
ZFIN Staff (2023) Automated Curation of UniProt Database Links. Automated Data Submission.
ZFIN Staff (2023) Automated Curation of UniProt Database Links. Automated Data Submission.
ZFIN Staff (2020) Addition of links from ZFIN to Expression Atlas. Semi-automated Curation.
ZFIN Staff (2017) Curation of PANTHER Gene IDs. Automated Data Submission.
ZFIN Staff (2017) Curation of Alliance of Genome Resources Database Links. Automated Data Submission.
ZFIN Staff (2013) Semi-automated association of ENSDARG identifiers with ZFIN genes for the ZMP project. Semi-automated Curation.
Burgess, S., and Lin, S. (2011) Viral Insertion Mutants. ZFIN Direct Data Submission.
UniProt-GOA (2011) Gene Ontology annotation based on the manual assignment of UniProtKB Subcellular Location terms in UniProtKB/Swiss-Prot entries. Manually curated data.
UniProt-GOA (2011) Gene Ontology annotation based on the automatic assignment of UniProtKB Subcellular Location terms in UniProtKB/TrEMBL entries. Manually curated data.
Gaudet, P., Livstone, M., Thomas, P., The Reference Genome Project (2010) Annotation inferences using phylogenetic trees. Automated Data Submission.
GOA, HGNC, AgBase and UniProtKB curators (2007) Manual transfer of experimentally-verified manual GO annotation data to orthologs by curator judgment of sequence similarity. ZFIN Direct Data Submission.
ZFIN Staff (2007) Microarray Expression to Gene Association in ZFIN. Semi-automated Curation.
Ensembl curators, GOA curators (2006) Automatic transfer of experimentally verified manual GO annotation data to orthologs using Ensembl Compara. Manually curated data.
ZFIN Staff (2006) Curation of Ensembl Database Links. Automated Data Submission.
Thisse, B., Thisse, C. (2004) Fast Release Clones: A High Throughput Expression Analysis. ZFIN Direct Data Submission.
ZFIN Staff (2004) ZGC Data Curation and Association in ZFIN by ZFIN Staff. Semi-automated Curation.
Rauch, G.J., Lyons, D.A., Middendorf, I., Friedlander, B., Arana, N., Reyes, T., and Talbot, W.S. (2003) Submission and Curation of Gene Expression Data. ZFIN Direct Data Submission.
ZFIN Staff (2003) Curation of VEGA Database Links. Automated Data Submission.
ZFIN Staff (2003) Computational Sequence to Gene Association in ZFIN. Semi-automated Curation.
ZFIN Staff (2002) Gene Ontology Annotation Through Association of UniProt Keywords with GO Terms. Automated Data Submission.
ZFIN Staff (2002) Curation of NCBI Gene Data Via Shared RNA Sequence IDs. Automated Data Submission.
ZFIN Staff (2002) Scientific Curation. Manually curated data.
ZFIN Staff (2002) Gene Ontology Annotation Through Association of InterPro Records with GO Terms. Automated Data Submission.
Your Input Welcome
Your Input Welcome
We welcome your input and comments. Please use this form to recommend updates to the information in ZFIN. We appreciate as much detail as possible and references as appropriate. We will review your comments promptly.
Please check the highlighted fields and try again.
Name:
Institution:
Email address:
Please leave blank:
Subject:
Comments:
Send your comments
Thank you for submitting comments. Your input has been emailed to ZFIN curators who may contact you if additional information is required.
Oops. Something went wrong. Please try again later.