Publication	Data		Fish	Anatomy
Tata et al., 2025	Figure 6		ift54m649/m649; li1Tg	pronephric glomerulus increased area, abnormal pronephros cystic, abnormal whole organism increased curvature, abnormal
D'Gama et al., 2024	Figure 1		ift54tp49d/tp49d	brainstem 9+0 non-motile cilium ab1-arl13b labeling absent, abnormal brainstem 9+0 non-motile cilium absence of anatomical entity, abnormal brainstem motile cilium ab1-tub-glut labeling absent, abnormal brainstem motile cilium absence of anatomical entity, abnormal optic tectum 9+0 non-motile cilium ab1-arl13b labeling absent, abnormal optic tectum 9+0 non-motile cilium absence of anatomical entity, abnormal optic tectum motile cilium ab1-tub-glut labeling absent, abnormal optic tectum motile cilium absence of anatomical entity, abnormal telencephalon 9+0 non-motile cilium ab1-arl13b labeling absent, abnormal telencephalon 9+0 non-motile cilium absence of anatomical entity, abnormal telencephalon motile cilium ab1-tub-glut labeling absent, abnormal telencephalon motile cilium absence of anatomical entity, abnormal
	Figure 2		ift54tp49d/tp49d	brainstem decreased width, abnormal corpus cerebelli decreased width, abnormal hindbrain increased length, abnormal optic tectum ab3-h3 labeling increased distribution, abnormal optic tectum cell population proliferation increased process quality, abnormal optic tectum decreased width, abnormal optic tectum neuron increased amount, abnormal optic tectum neuron increased width, abnormal telencephalon decreased length, abnormal
	Figure 3		ift54tp49d/tp49d	cerebellum axon ab1-tuba labeling spatial pattern, abnormal cerebellum axon neuron projection quality, abnormal cerebellum malformed, abnormal cerebellum presynapse ab-sv2 labeling spatial pattern, abnormal Purkinje cell ab1-pvalb labeling decreased distribution, abnormal Purkinje cell decreased amount, abnormal
	Figure 5		ift54tp49d/tp49d; jf7Tg ,   ift54tp49d/tp49d	retinal ganglion cell axon neuron projection quality, abnormal visual perception absent process, abnormal
	Figure 7		ift54tp49d/tp49d; jf7Tg	habenula regulation of neuronal action potential decreased process quality, abnormal hindbrain regulation of neuronal action potential decreased process quality, abnormal optic tectum regulation of neuronal action potential decreased process quality, abnormal telencephalon regulation of neuronal action potential decreased process quality, abnormal
Thouvenin et al., 2020	Figure 4		ift54tp49d/tp49d	central canal cerebrospinal fluid circulation decreased rate, abnormal central canal collapsed, abnormal central canal curved, abnormal central canal decreased diameter, abnormal
Cantaut-Belarif et al., 2018	Fig. 2		ift54tp49d/tp49d	ependymal cell motile cilium decreased length, abnormal spinal cord ependymal cell has fewer parts of type ependymal cell motile cilium, abnormal spinal cord motile cilium assembly decreased occurrence, abnormal
	Fig. 4		ift54tp49d/tp49d	Reissner's fiber Ab1-RF labeling decreased amount, abnormal Reissner's fiber Ab1-RF labeling spatial pattern, abnormal Reissner's fiber malformed, abnormal
Olstad et al., 2018	Fig. 5		ift54tp49d/tp49d	third ventricle cerebrospinal fluid circulation arrested, abnormal third ventricle motile cilium absent, abnormal
	Fig. 7		ift54tp49d/tp49d	ventricular system hydrocephalic, abnormal ventricular system increased size, abnormal
Macia et al., 2017	Fig. text		WT + MO1-ift54	pronephros cystic, abnormal trunk curved, abnormal
Pooranachandran et al., 2016	Fig. 3		ift54tp49d/tp49d	photoreceptor cell ciliary basal body mislocalised, abnormal retinal cone cell absence due to degeneration, abnormal retinal cone cell decreased amount, abnormal retinal rod cell absence due to degeneration, abnormal retinal rod cell decreased amount, abnormal
	Fig. 4		ift54tp49d/tp49d	retinal cone cell decreased amount, abnormal
Stawicki et al., 2016	Fig. 5		ift54tp49d/tp49d (AB)	cilium assembly disrupted, abnormal neuromast hair cell kinocilium absent, abnormal
Bizet et al., 2015	Fig. 2		ift54tp49d/tp49d	embryonic camera-type eye development disrupted, abnormal eye ovate, abnormal pronephric glomerulus cystic, abnormal pronephric tubule dilated, abnormal pronephros cystic, abnormal pronephros development disrupted, abnormal retina anatomical surface decreased area, abnormal whole organism curved ventral, abnormal whole organism increased curvature, abnormal
	Fig. 5		ift54tp49d/tp49d	microtubule polymerization decreased rate, abnormal
	Fig. 7		ift54tp49d/tp49d	whole organism increased curvature, abnormal
	Fig. S4		AB/TU + MO1-ift54	embryonic camera-type eye development disrupted, abnormal photoreceptor cell decreased amount, abnormal pronephros cystic, abnormal pronephros development disrupted, abnormal retina anatomical surface decreased area, abnormal whole organism curved ventral, abnormal whole organism increased curvature, abnormal
Jin et al., 2014	Fig. 8		ift54tp49d/tp49d	cilium assembly decreased process quality, abnormal hair cell anterior macula cilium decreased length, abnormal
Li et al., 2008	Fig. 6		WT + MO2-ift54	axis decreased length, abnormal notochord increased width, abnormal somite decreased thickness, abnormal somite elongated, abnormal
	Fig. S3		WT + MO2-ift54	axis decreased length, abnormal notochord increased width, abnormal
Omori et al., 2008	Fig. 1		ift54tp49d/tp49d	cilium assembly disrupted, abnormal post-vent region curved ventral, abnormal pronephros cystic, abnormal whole organism cilium morphology, abnormal
	Fig. 4		WT + MO1-ift54	cilium assembly disrupted, abnormal peripheral olfactory organ cilium decreased length, abnormal post-vent region curved ventral, abnormal
	Fig. S2		WT + MO1-ift54	olfactory pit cilium decreased amount, abnormal post-vent region curved ventral, abnormal
	Fig. S5		ift54tp49d/tp49d	pronephric duct cilium decreased amount, abnormal pronephric duct cilium morphology, abnormal
Phenotype Annotation (1994-2006)	Fig. for (m649)		ift54m649 (AB)	anatomical system quality, abnormal eye quality, abnormal nervous system quality, abnormal pronephros quality, abnormal sensory system quality, abnormal whole organism shape, abnormal
	Fig. for (tp49d)		ift54tp49d	anatomical system quality, abnormal eye decreased size, abnormal heart quality, abnormal liver quality, abnormal nervous system quality, abnormal post-vent region curved, abnormal pronephros quality, abnormal sensory system quality, abnormal whole organism shape, abnormal
Bahadori et al., 2003	Fig. 1		ift54tp49d/tp49d	eye movement quality, abnormal optokinetic behavior arrested, abnormal visual perception arrested, abnormal
	Fig. 2		ift54tp49d/tp49d	response to light stimulus arrested, abnormal retina electrical conductivity, abnormal
	Fig. 3		ift54tp49d/tp49d	eye photoreceptor cell nucleus condensed, abnormal retina central region has fewer parts of type eye photoreceptor cell, abnormal retina central region lacks all parts of type eye photoreceptor cell, abnormal retina photoreceptor outer segment absent, abnormal retinal outer nuclear layer wholeness, abnormal
	Fig. 4		ift54tp49d/tp49d	eye photoreceptor cell apoptotic, abnormal retina central region apoptotic, abnormal
	Fig. 5		ift54tp49d/tp49d	retina central region lacks all parts of type retinal cone cell, abnormal retina photoreceptor outer segment decreased size, abnormal retina photoreceptor outer segment disorganized, abnormal
Drummond et al., 1998	text only		ift54m649 (AB)	eye degenerate, abnormal photoreceptor cell degenerate, abnormal pronephros cystic, abnormal whole organism curved ventral, abnormal
Chen et al., 1996	Table 2		ift54tp49d/tp49d	heart morphology, abnormal liver morphology, abnormal post-vent region curved ventral, abnormal pronephros cystic, abnormal
Malicki et al., 1996	Fig. 4		ift54m649/m649 (AB)	eye elliptic, abnormal
	Fig. 5		ift54m649/m649 (AB)	eye photoreceptor cell decreased amount, abnormal retinal photoreceptor layer apoptotic, abnormal retinal photoreceptor layer structure, abnormal
	Table 1		ift54m649/m649 (AB)	pronephros cystic, abnormal whole organism anterior-posterior axis curled, abnormal