ZFIN is now using GRCz12tu for Genomic Data
Gene
sltm
- ID
- ZDB-GENE-040426-2647
- Name
- SAFB-like, transcription modulator
- Symbol
- sltm Nomenclature History
- Previous Names
-
- wu:fd12b08
- zgc:65985
- Type
- protein_coding_gene
- Location
- Chr: 7 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable RNA binding activity. Predicted to be active in nucleus. Orthologous to human SLTM (SAFB like transcription modulator).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- No data available
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR000504 | RNA recognition motif domain |
| Domain | IPR003034 | SAP domain |
| Family | IPR051738 | Scaffold Attachment Factor and Modulators |
| Homologous_superfamily | IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
| Homologous_superfamily | IPR035979 | RNA-binding domain superfamily |
| Homologous_superfamily | IPR036361 | SAP domain superfamily |
Domain Details Per Protein
| Protein | Additional Resources | Length | Nucleotide-binding alpha-beta plait domain superfamily | RNA-binding domain superfamily | RNA recognition motif domain | SAP domain | SAP domain superfamily | Scaffold Attachment Factor and Modulators |
|---|---|---|---|---|---|---|---|---|
| UniProtKB:F1Q6F9 | InterPro | 983 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| aberrant processed transcript |
sltm-204
(1)
|
Ensembl | 595 nt | ||
| mRNA |
sltm-203
(1)
|
Ensembl | 805 nt | ||
| mRNA |
sltm-205
(1)
|
Ensembl | 449 nt | ||
| mRNA |
sltm-207
(1)
|
Ensembl | 9,342 nt | ||
| mRNA |
sltm-209
(1)
|
Ensembl | 2,002 nt | ||
| ncRNA |
sltm-004
(1)
|
Ensembl | 445 nt | ||
| ncRNA |
sltm-005
(1)
|
Ensembl | 1,290 nt | ||
| ncRNA |
sltm-007
(1)
|
Ensembl | 740 nt | ||
| ncRNA |
sltm-008
(1)
|
Ensembl | 680 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers