Gene

sltm

ID
ZDB-GENE-040426-2647
Name
SAFB-like, transcription modulator
Symbol
sltm Nomenclature History
Previous Names
  • wu:fd12b08
  • zgc:65985
Type
protein_coding_gene
Location
Chr: 7 Mapping Details/Browsers
Description
Predicted to enable sequence-specific DNA binding activity. Predicted to be involved in regulation of mRNA processing and regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human SLTM (SAFB like transcription modulator).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
No data available
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
No data available
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
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Sequence Targeting Reagents
No data available
Human Disease
Associated With sltm Human Ortholog
No data available
Associated With sltm Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR000504 RNA recognition motif domain
Domain IPR003034 SAP domain
Family IPR051738 Scaffold Attachment Factor and Modulators
Homologous_superfamily IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
Homologous_superfamily IPR035979 RNA-binding domain superfamily
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Domain Details Per Protein
Protein Additional Resources Length Nucleotide-binding alpha-beta plait domain superfamily RNA-binding domain superfamily RNA recognition motif domain SAP domain SAP domain superfamily Scaffold Attachment Factor and Modulators
UniProtKB:F1Q6F9 InterPro 983
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Transcripts
Genome Browsers
Genome Build: GRCz11Chromosome: 7
Type Name Annotation Method Has Havana Data Length (nt) Analysis
aberrant processed transcript sltm-204 (1) Ensembl 595 nt
mRNA sltm-203 (1) Ensembl 805 nt
mRNA sltm-205 (1) Ensembl 449 nt
mRNA sltm-207 (1) Ensembl 9,342 nt
mRNA sltm-209 (1) Ensembl 2,002 nt
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Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
No data available
Marker Relationships
Relationship Marker Type Marker Accession Numbers Citations
Contained inBACCH211-162M14ZFIN Curated Data
EncodesESTfd12b08ZFIN Curated Data
EncodescDNAMGC:65985ZFIN Curated Data
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Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Species Symbol Chromosome Accession # Evidence
HumanSLTM15
Amino acid sequence comparison (1)
Conserved genome location (synteny) (2)
MouseSltm9
Conserved genome location (synteny) (1)
Amino acid sequence comparison (1)
Citations
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