Gene

sltm

ID

ZDB-GENE-040426-2647

Name

SAFB-like, transcription modulator

Symbol

sltm Nomenclature History

Previous Names

wu:fd12b08
zgc:65985

Type

protein_coding_gene

Location

Chr: 7 Mapping Details/Browsers

Description

Predicted to enable sequence-specific DNA binding activity. Predicted to be involved in regulation of mRNA processing and regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human SLTM (SAFB like transcription modulator).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With sltm Human Ortholog

No data available

Associated With sltm Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR000504	RNA recognition motif domain
Domain	IPR003034	SAP domain
Family	IPR051738	Scaffold Attachment Factor and Modulators
Homologous_superfamily	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily
Homologous_superfamily	IPR035979	RNA-binding domain superfamily
Homologous_superfamily	IPR036361	SAP domain superfamily

Domain Details Per Protein

Protein	Additional Resources	Length	Nucleotide-binding alpha-beta plait domain superfamily	RNA-binding domain superfamily	RNA recognition motif domain	SAP domain	SAP domain superfamily	Scaffold Attachment Factor and Modulators
UniProtKB:F1Q6F9	InterPro	983

Transcripts

Genome Browsers

NCBI

Type	Name	Annotation Method	Length (nt)	Analysis
aberrant processed transcript	sltm-204 (1) Ensembl	Ensembl	595 nt	Select Tool ZFIN BLAST
mRNA	sltm-203 (1) Ensembl	Ensembl	805 nt	Select Tool ZFIN BLAST
mRNA	sltm-205 (1) Ensembl	Ensembl	449 nt	Select Tool ZFIN BLAST
mRNA	sltm-207 (1) Ensembl	Ensembl	9,342 nt	Select Tool ZFIN BLAST
mRNA	sltm-209 (1) Ensembl	Ensembl	2,002 nt	Select Tool ZFIN BLAST
ncRNA	sltm-004 (1) Ensembl	Ensembl	445 nt	Select Tool ZFIN BLAST
ncRNA	sltm-005 (1) Ensembl	Ensembl	1,290 nt	Select Tool ZFIN BLAST
ncRNA	sltm-007 (1) Ensembl	Ensembl	740 nt	Select Tool ZFIN BLAST
ncRNA	sltm-008 (1) Ensembl	Ensembl	680 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations