FIGURE

Fig 2

ID

ZDB-FIG-210128-41

Publication

Lin et al., 2020 - Molecular asymmetry in the cephalochordate embryo revealed by single-blastomere transcriptome profiling

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Fig 2

Identification of differentially enriched transcripts (DETs).

(A-B) MA-plots showing the log2 fold changes between the germ granule-positive and negative cells over the average transcript level of each gene among the 2-cell stage samples analyzed by using DESeq2 (A) or edgeR (B). The DETs (FDR < 0.1) are shown in red. (C) Distribution of FPKM values of DETs based on DESeq2 (orange) and edgeR (blue) analyses at the 2-cell stage. (D-E) MA-plots showing the log2 fold changes between the animal and vegetal tiers over the average transcript level of each gene among the 8-cell stage samples analyzed by using DESeq2 (D) or edgeR (E). (F) Distribution of FPKM values of DETs based on DESeq2 (orange) and edgeR (blue) analyses at the 8-cell stage. (G-J) Venn diagrams show the number of DETs in the germ granule-positive cell (G), germ granule-negative cell (H), animal tier (I) and vegetal tier (J), comparing results between DESeq2 and edgeR analyses. Underlying data are available in S1 Data.

Expression Data

Expression Detail

Antibody Labeling

Phenotype Data

Phenotype Detail

Acknowledgments

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