Gene
zmym4.2
- ID
- ZDB-GENE-060503-672
- Name
- zinc finger MYM-type containing 4, tandem duplicate 2
- Symbol
- zmym4.2 Nomenclature History
- Previous Names
-
- si:ch211-173p18.2
- si:ch211-173p18.3
- Type
- protein_coding_gene
- Location
- Chr: 19 Mapping Details/Browsers
- Description
- Predicted to have DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in regulation of cell morphogenesis and regulation of transcription by RNA polymerase II. Predicted to localize to nucleus. Orthologous to human ZMYM4 (zinc finger MYM-type containing 4).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- No data available
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
| Allele | Type | Localization | Consequence | Mutagen | Supplier |
|---|---|---|---|---|---|
| sa11232 | Allele with one point mutation | Unknown | Splice Site | ENU | |
| sa23578 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| sa32253 | Allele with one point mutation | Unknown | Premature Stop | ENU | |
| sa32254 | Allele with one point mutation | Unknown | Premature Stop | ENU |
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No data available
Human Disease
Domain, Family, and Site Summary
Domain Details Per Protein
| Protein | Length | Domain of unknown function DUF3504 | THAP-type zinc finger | THAP-type zinc finger superfamily | TRASH domain | Zinc finger, MYM-type | Zinc finger MYM-type/QRICH1 |
|---|---|---|---|---|---|---|---|
|
UniProtKB:F1R3K9
|
1084 | ||||||
|
UniProtKB:A0A8M2B6C6
|
1370 | ||||||
|
UniProtKB:A0A8M2B6G0
|
1375 | ||||||
|
UniProtKB:A0A8M2B6K8
|
1469 | ||||||
|
UniProtKB:A0A8M2B6F4
|
1565 |
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| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
si:ch211-173p18.3-201
(1)
|
Ensembl | 3,705 nt | ||
| mRNA |
si:ch211-173p18.3-202
(1)
|
Ensembl | 727 nt | ||
| mRNA |
si:ch211-173p18.3-203
(1)
|
Ensembl | 5,133 nt | ||
| mRNA |
si:ch211-173p18.3-206
(1)
|
Ensembl | 784 nt | ||
| ncRNA |
si:ch211-173p18.3-003
(1)
|
Ensembl | 755 nt |
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Interactions and Pathways
No data available
Plasmids
No data available
No data available
| Relationship | Marker Type | Marker | Accession Numbers | Citations |
|---|---|---|---|---|
| Contained in | BAC | CH211-173P18 | ZFIN Curated Data |
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| Type | Accession # | Sequence | Length (nt/aa) | Analysis |
|---|---|---|---|---|
| RNA | RefSeq:NM_001044320 (1) | 3791 nt | ||
| Genomic | GenBank:BX510986 (1) | 157245 nt | ||
| Polypeptide | UniProtKB:A0A8M2B6F4 (1) | 1565 aa |
- Elkon, R., Milon, B., Morrison, L., Shah, M., Vijayakumar, S., Racherla, M., Leitch, C.C., Silipino, L., Hadi, S., Weiss-Gayet, M., Barras, E., Schmid, C.D., Ait-Lounis, A., Barnes, A., Song, Y., Eisenman, D.J., Eliyahu, E., Frolenkov, G.I., Strome, S.E., Durand, B., Zaghloul, N.A., Jones, S.M., Reith, W., Hertzano, R. (2015) RFX transcription factors are essential for hearing in mice. Nature communications. 6:8549
- Salisbury, J.P., Sîrbulescu, R.F., Moran, B.M., Auclair, J.R., Zupanc, G.K., Agar, J.N. (2015) The central nervous system transcriptome of the weakly electric brown ghost knifefish (Apteronotus leptorhynchus): de novo assembly, annotation, and proteomics validation. BMC Genomics. 16:166
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