Gene

rarga

ID
ZDB-GENE-980526-531
Name
retinoic acid receptor gamma a
Symbol
rarga Nomenclature History
Previous Names
  • rarg2 (1)
  • rarg
  • zrarg
  • etID309710.23 (1)
  • etID33387.23 (1)
  • NR1B3-A (1)
  • nr1b3a (1)
  • RARgamma-A (1)
  • wu:fb01e02 (1)
  • wu:fb01f03
  • wu:fc35a09 (1)
  • zRAR-gamma-2 (1)
  • zRAR-gamma
Type
protein_coding_gene
Location
Chr: 23 Mapping Details/Browsers
Description
Exhibits DNA binding activity. Involved in liver development and pharyngeal system development. Predicted to localize to RNA polymerase II transcription factor complex. Is expressed in several structures, including central nervous system; germ ring; gonad; mesoderm; and neural crest. Orthologous to human RARG (retinoic acid receptor gamma).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
23 figures from 11 publications
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
3 figures from 3 publications
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Allele Type Localization Consequence Mutagen Supplier
la010912TgTransgenic insertionUnknownUnknownDNA
la014420TgTransgenic insertionUnknownUnknownDNA
la014421TgTransgenic insertionUnknownUnknownDNA
la022698TgTransgenic insertionUnknownUnknownDNA
la022699TgTransgenic insertionUnknownUnknownDNA
la022701TgTransgenic insertionUnknownUnknownDNA
la028558TgTransgenic insertionUnknownUnknownDNA
la028559TgTransgenic insertionUnknownUnknownDNA
sa32460Allele with one point mutationUnknownPremature StopENU
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Sequence Targeting Reagents
Targeting Reagent Created Alleles Citations
MO1-rargaN/A (6)
MO2-rargaN/ASamarut et al., 2014
MO3-rargaN/AKalaskar et al., 2019
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Human Disease
Associated With rarga Human Ortholog
No data available
Associated With rarga Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR000536 Nuclear hormone receptor, ligand-binding domain
Domain IPR001628 Zinc finger, nuclear hormone receptor-type
Domain IPR047158 Retinoic acid receptor, ligand-binding domain
Domain IPR047159 Retinoic acid receptor, DNA-binding domain
Family IPR001723 Nuclear hormone receptor
1 - 5 of 8 Show all
Domain Details Per Protein
Protein Length Nuclear hormone receptor Nuclear hormone receptor, ligand-binding domain Nuclear hormone receptor-like domain superfamily Retinoic acid receptor Retinoic acid receptor, DNA-binding domain Retinoic acid receptor, ligand-binding domain Zinc finger, NHR/GATA-type Zinc finger, nuclear hormone receptor-type
UniProtKB:Q91392 499
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Transcripts
Genome Browsers
Genome Build: GRCz11Chromosome: 23
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA rarga-201 (1) Ensembl 2,053 nt
mRNA rarga-202 (1) Ensembl 666 nt
mRNA rarga-203 (1) Ensembl 686 nt
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Interactions and Pathways
Antibodies
No data available
Plasmids
No data available
Constructs
No data available
Marker Relationships
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Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Species Symbol Chromosome Accession # Evidence
HumanRARG12
Phylogenetic tree (1)
Conserved genome location (synteny) (4)
Amino acid sequence comparison (7)
MouseRarg15
Conserved genome location (synteny) (1)
Amino acid sequence comparison (6)
Phylogenetic tree (1)
Citations
1 - 10 of 58
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