ZFIN ID: ZDB-BAC-060503-1814
SEQUENCE INFORMATION
BAC Name: RP71-68N21
SEQUENCE INFORMATION
Type Accession # Length (nt/aa) Analysis
RNA RefSeq:NM_001423734 (1) 7103 nt
RefSeq:NM_001123307 (1) 6980 nt
RefSeq:NM_001128256 (1) 6794 nt
RefSeq:NM_207056 (1) 3392 nt
RefSeq:NM_001020800 (1) 2661 nt
RefSeq:NM_001114450 (1) 2508 nt
RefSeq:NM_001386297 (1) 2399 nt
RefSeq:NM_001430913 (1) 1869 nt
RefSeq:NM_200483 (1) 1795 nt
RefSeq:NM_001202437 (1) 1790 nt
RefSeq:NM_200720 (1) 916 nt
RefSeq:NM_001004652 (1) 542 nt
RefSeq:XM_021478741 (1) 7124 nt
RefSeq:XM_073911763 (1) 3431 nt
RefSeq:XM_073912200 (1) 2796 nt
RefSeq:XM_068223300 (1) 2673 nt
RefSeq:XM_005167590 (1) 2497 nt
RefSeq:XM_021478892 (1) 2455 nt
RefSeq:XM_009304664 (1) 2449 nt
RefSeq:XM_073911919 (1) 2412 nt
RefSeq:XM_073911762 (1) 2259 nt
RefSeq:XM_073911918 (1) 2156 nt
RefSeq:XM_005167545 (1) 1756 nt
RefSeq:XR_012385303 (1) 2801 nt
RefSeq:XR_012385304 (1) 2795 nt
RefSeq:XR_012384914 (1) 2017 nt
GenBank:GDQH01004461 (1) 7002 nt
GenBank:GFIL01030493 (1) 3955 nt
GenBank:EF524200 (1) 3670 nt
GenBank:EF524199 (1) 3484 nt
GenBank:BC066406 (1) 3392 nt
GenBank:GDQH01009273 (1) 3144 nt
GenBank:GDQH01017796 (1) 2726 nt
GenBank:BC155819 (1) 2675 nt
GenBank:AY293119 (1) 2661 nt
GenBank:BC129264 (1) 2660 nt
GenBank:BC155228 (1) 2508 nt
GenBank:GFIL01038129 (1) 2339 nt
GenBank:BC055205 (1) 1809 nt
GenBank:GFIL01012291 (1) 1774 nt
GenBank:BC090729 (1) 1745 nt
GenBank:BC091849 (1) 1589 nt
GenBank:BC074074 (1) 1550 nt
GenBank:BC164200 (1) 1180 nt
GenBank:EH501612 (1) 994 nt
GenBank:EH538581 (1) 930 nt
GenBank:EH578587 (1) 906 nt
GenBank:EH478847 (1) 882 nt
GenBank:EH595954 (1) 882 nt
GenBank:BC155197 (1) 872 nt
GenBank:BC059482 (1) 855 nt
GenBank:EH440312 (1) 830 nt
GenBank:DR721840 (1) 750 nt
GenBank:DR729106 (1) 715 nt
GenBank:CD597771 (1) 650 nt
GenBank:BI709589 (1) 619 nt
GenBank:EH490144 (1) 573 nt
GenBank:GFIL01006899 (1) 565 nt
GenBank:EB974499 (1) 552 nt
GenBank:EH495356 (1) 544 nt
GenBank:BC081527 (1) 519 nt
GenBank:GFIL01034420 (1) 459 nt
GenBank:CD603519 (1) 445 nt
GenBank:EB984405 (1) 421 nt
GenBank:CD600912 (1) 347 nt
GenBank:BC164430 (1) 274 nt
GenBank:GDQH01004381 (1)
Genomic GenBank:CU151884 (1) 200118 nt Blast at MegaBLAST
GenBank:CT027983 (1) 185833 nt
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GenBank:BX511129 152922 nt
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GenBank:BX936339 (2) 38616 nt
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GenBank:HB890758 (1) 1809 nt
GenBank:HC948167 (1) 1809 nt
GenBank:JBMGRA010000009 (1)
Polypeptide UniProtKB:B0S8I4 (1) 1140 aa
UniProtKB:B2BJC1 (1) 1140 aa
UniProtKB:A0A8M1NH44 (1) 1078 aa
UniProtKB:B2BJC0 (1) 1078 aa
UniProtKB:E9QHV0 (1) 686 aa
UniProtKB:A0A8M9QB93 (1) 684 aa
UniProtKB:A0A8M1P1R9 (1) 495 aa
UniProtKB:Q58EL7 (1) 495 aa
UniProtKB:Q6NYZ4 (1) 456 aa
UniProtKB:A0A8M2BF11 (1) 378 aa
UniProtKB:F1QSA2 (1) 374 aa
UniProtKB:Q6JWV8 (1) 370 aa
UniProtKB:A9JT76 (1) 367 aa
UniProtKB:F1QCD8 (1) 357 aa
UniProtKB:Q7SXX8 (1) 357 aa
UniProtKB:A0A8M9PLD3 (1) 311 aa
UniProtKB:A0AB32TV56 (1) 265 aa
UniProtKB:Q6PC41 (1) 153 aa
UniProtKB:Q66I53 (1) 68 aa
RefSeq:NP_001116779 (1) 1140 aa
RefSeq:NP_001410663 (1) 1140 aa
RefSeq:NP_001121728 (1) 1078 aa
RefSeq:NP_001189366 (1) 495 aa
RefSeq:NP_996939 (1) 456 aa
RefSeq:NP_001373226 (1) 374 aa
RefSeq:NP_001018636 (1) 370 aa
RefSeq:NP_001107922 (1) 367 aa
RefSeq:NP_001417842 (1) 357 aa
RefSeq:NP_956777 (1) 357 aa
RefSeq:NP_957014 (1) 153 aa
RefSeq:NP_001004652 (1) 68 aa
RefSeq:XP_021334416 (1) 1140 aa
RefSeq:XP_021334567 (1) 686 aa
RefSeq:XP_009302939 (1) 684 aa
RefSeq:XP_005167647 (1) 495 aa
RefSeq:XP_073768301 (1) 495 aa
RefSeq:XP_073767863 (1) 378 aa
RefSeq:XP_005167602 (1) 357 aa
RefSeq:XP_073768019 (1) 319 aa
RefSeq:XP_073768020 (1) 316 aa
RefSeq:XP_068079401 (1) 265 aa
RefSeq:XP_073767864 (1) 211 aa
GenPept:ABS88161 (1) 1140 aa
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GenPept:ABS88160 (1) 1078 aa
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GenPept:Q58EL7 (1) 495 aa
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GenPept:AAI55820 (1) 462 aa
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GenPept:AAH91849 (1) 459 aa
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GenPept:AAH66406 (1) 456 aa
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GenPept:Q6NYZ4 (1) 456 aa
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GenPept:AAI29265 (1) 370 aa
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GenPept:AAI64200 (1) 370 aa
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GenPept:AAQ57588 (1) 370 aa
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GenPept:Q6JWV8 (1) 370 aa
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GenPept:AAI55229 (1) 367 aa
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GenPept:AAH55205 (1) 357 aa
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GenPept:CBF69568 (1) 357 aa
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GenPept:CBU94324 (1) 357 aa
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GenPept:AAH59482 (1) 153 aa
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GenPept:AAI55198 (1) 153 aa
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GenPept:AAH81527 (1) 68 aa
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GenPept:AAI64430 (1) 68 aa
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GenPept:AAH74074 (1)
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RP71-68N21 CONTAINS
Marker Type Accession # Length (nt/aa) Analysis
[GENE] cox17 (20) RNA RefSeq:NM_001004652 542
  RNA GenBank:EH490144 573
  RNA GenBank:GFIL01006899 565
  RNA GenBank:EH495356 544
  RNA GenBank:BC081527 519
  RNA GenBank:BC164430 274
  Genomic GenBank:JBMGRA010000009
  Genomic GenBank:CU151884 200118 Blast at MegaBLAST
  Genomic GenBank:CT027983 185833
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  Genomic GenBank:BX511129 152922
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  Polypeptide UniProtKB:Q66I53 68
  Polypeptide RefSeq:NP_001004652 68
  Polypeptide GenPept:AAI64430 68
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  Polypeptide GenPept:AAH81527 68
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[GENE] hao2 (9) RNA RefSeq:XM_073911763 3431
  RNA RefSeq:XM_073911762 2259
  RNA RefSeq:XR_012384914 2017
  RNA RefSeq:NM_001430913 1869
  RNA RefSeq:NM_200483 1795
  RNA RefSeq:XM_005167545 1756
  RNA GenBank:BC055205 1809
  RNA GenBank:GFIL01012291 1774
  Genomic GenBank:JBMGRA010000009
  Genomic GenBank:CU151884 200118 Blast at MegaBLAST
  Genomic GenBank:BX511129 152922
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  Genomic GenBank:HC948167 1809
  Genomic GenBank:HB890758 1809
  Polypeptide UniProtKB:A0A8M2BF11 378
  Polypeptide UniProtKB:Q7SXX8 357
  Polypeptide UniProtKB:F1QCD8 357
  Polypeptide RefSeq:XP_073767863 378
  Polypeptide RefSeq:XP_005167602 357
  Polypeptide RefSeq:NP_956777 357
  Polypeptide RefSeq:NP_001417842 357
  Polypeptide RefSeq:XP_073767864 211
  Polypeptide GenPept:CBU94324 357
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  Polypeptide GenPept:CBF69568 357
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  Polypeptide GenPept:AAH55205 357
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[GENE] hsd3b1 (29) RNA RefSeq:XM_073911919 2412
  RNA RefSeq:NM_001386297 2399
  RNA RefSeq:XM_073911918 2156
  RNA GenBank:BC074074 1550
  RNA GenBank:EH538581 930
  Genomic GenBank:JBMGRA010000009
  Genomic GenBank:CU151884 200118 Blast at MegaBLAST
  Genomic GenBank:BX511129 152922
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  Polypeptide UniProtKB:F1QSA2 374
  Polypeptide UniProtKB:A0A8M9PLD3 311
  Polypeptide RefSeq:NP_001373226 374
  Polypeptide RefSeq:XP_073768019 319
  Polypeptide RefSeq:XP_073768020 316
  Polypeptide GenPept:AAH74074
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[GENE] lats2 (24) RNA RefSeq:XM_021478741 7124
  RNA RefSeq:NM_001423734 7103
  RNA RefSeq:NM_001123307 6980
  RNA RefSeq:NM_001128256 6794
  RNA GenBank:GDQH01004461 7002
  RNA GenBank:EF524200 3670
  RNA GenBank:EF524199 3484
  Genomic GenBank:JBMGRA010000009
  Genomic GenBank:CU151884 200118 Blast at MegaBLAST
  Genomic GenBank:CT027983 185833
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  Genomic GenBank:BX511129 152922
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  Genomic GenBank:BX936339 38616
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  Polypeptide UniProtKB:B2BJC1 1140
  Polypeptide UniProtKB:B0S8I4 1140
  Polypeptide UniProtKB:B2BJC0 1078
  Polypeptide UniProtKB:A0A8M1NH44 1078
  Polypeptide RefSeq:XP_021334416 1140
  Polypeptide RefSeq:NP_001410663 1140
  Polypeptide RefSeq:NP_001116779 1140
  Polypeptide RefSeq:NP_001121728 1078
  Polypeptide GenPept:ABS88161 1140
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  Polypeptide GenPept:ABS88160 1078
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[GENE] pla1a (9) RNA RefSeq:NM_207056 3392
  RNA RefSeq:XM_068223300 2673
  RNA GenBank:GFIL01030493 3955
  RNA GenBank:BC066406 3392
  RNA GenBank:BC155819 2675
  Genomic GenBank:JBMGRA010000009
  Genomic GenBank:CU151884 200118 Blast at MegaBLAST
  Genomic GenBank:BX511129 152922
Select Tool
  Polypeptide UniProtKB:Q6NYZ4 456
  Polypeptide UniProtKB:A0AB32TV56 265
  Polypeptide RefSeq:NP_996939 456
  Polypeptide RefSeq:XP_068079401 265
  Polypeptide GenPept:AAI55820 462
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  Polypeptide GenPept:Q6NYZ4 456
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  Polypeptide GenPept:AAH66406 456
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[GENE] popdc2 (10) RNA RefSeq:NM_001020800 2661
  RNA RefSeq:NM_001114450 2508
  RNA GenBank:GDQH01009273 3144
  RNA GenBank:AY293119 2661
  RNA GenBank:BC129264 2660
  RNA GenBank:BC155228 2508
  RNA GenBank:BC164200 1180
  Genomic GenBank:JBMGRA010000009
  Genomic GenBank:CU151884 200118 Blast at MegaBLAST
  Genomic GenBank:CT027983 185833
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  Genomic GenBank:BX511129 152922
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  Polypeptide UniProtKB:Q6JWV8 370
  Polypeptide UniProtKB:A9JT76 367
  Polypeptide RefSeq:NP_001018636 370
  Polypeptide RefSeq:NP_001107922 367
  Polypeptide GenPept:Q6JWV8 370
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  Polypeptide GenPept:AAQ57588 370
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  Polypeptide GenPept:AAI64200 370
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  Polypeptide GenPept:AAI29265 370
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  Polypeptide GenPept:AAI55229 367
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[GENE] sap18 (9) RNA RefSeq:NM_200720 916
  RNA GenBank:GDQH01004381
  RNA GenBank:BC090729 1745
  RNA GenBank:BC155197 872
  RNA GenBank:BC059482 855
  RNA GenBank:EH440312 830
  RNA GenBank:BI709589 619
  RNA GenBank:GFIL01034420 459
  Genomic GenBank:JBMGRA010000009
  Genomic GenBank:CU151884 200118 Blast at MegaBLAST
  Genomic GenBank:CT027983 185833
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  Genomic GenBank:BX511129 152922
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  Polypeptide UniProtKB:Q6PC41 153
  Polypeptide RefSeq:NP_957014 153
  Polypeptide GenPept:AAI55198 153
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  Polypeptide GenPept:AAH59482 153
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[GENE] si:rp71-68n21.9 (4) RNA RefSeq:XR_012385303 2801
  RNA RefSeq:XR_012385304 2795
  RNA RefSeq:XM_021478892 2455
  RNA RefSeq:XM_009304664 2449
  RNA GenBank:GDQH01017796 2726
  RNA GenBank:DR721840 750
  RNA GenBank:DR729106 715
  RNA GenBank:CD597771 650
  RNA GenBank:EB974499 552
  RNA GenBank:CD603519 445
  RNA GenBank:EB984405 421
  RNA GenBank:CD600912 347
  Genomic GenBank:JBMGRA010000009
  Genomic GenBank:CU151884 200118 Blast at MegaBLAST
  Genomic GenBank:BX511129 152922
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  Polypeptide UniProtKB:E9QHV0 686
  Polypeptide UniProtKB:A0A8M9QB93 684
  Polypeptide RefSeq:XP_021334567 686
  Polypeptide RefSeq:XP_009302939 684
[GENE] ska3 (9) RNA RefSeq:XM_073912200 2796
  RNA RefSeq:XM_005167590 2497
  RNA RefSeq:NM_001202437 1790
  RNA GenBank:GFIL01038129 2339
  RNA GenBank:BC091849 1589
  RNA GenBank:EH501612 994
  RNA GenBank:EH578587 906
  RNA GenBank:EH595954 882
  RNA GenBank:EH478847 882
  Genomic GenBank:JBMGRA010000009
  Genomic GenBank:CU151884 200118 Blast at MegaBLAST
  Genomic GenBank:BX511129 152922
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  Polypeptide UniProtKB:Q58EL7 495
  Polypeptide UniProtKB:A0A8M1P1R9 495
  Polypeptide RefSeq:XP_073768301 495
  Polypeptide RefSeq:XP_005167647 495
  Polypeptide RefSeq:NP_001189366 495
  Polypeptide GenPept:Q58EL7 495
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  Polypeptide GenPept:AAH91849 459
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