ZFIN

ZFIN ID: ZDB-GENE-010813-1

ZFIN ID: ZDB-GENE-010813-1

CITATIONS (78 total)

Gene Name:	crystallin, beta B1
Gene Symbol:	crybb1

Posner, M., Garver, T., Kaye, T., Brdicka, S., Suttle, M., Patterson, B., Farnsworth, D.R. (2024) Loss of αBa-crystallin, but not αA-crystallin, increases age-related cataract in the zebrafish lens. Experimental Eye Research. 244:109918

Chiang, D.Y., Verkerk, A.O., Victorio, R., Shneyer, B.I., van der Vaart, B., Jouni, M., Narendran, N., Kc, A., Sampognaro, J.R., Vetrano-Olsen, F., Oh, J.S., Buys, E., de Jonge, B., Shah, D.A., Kiviniemi, T., Burridge, P.W., Bezzina, C.R., Akhmanova, A., MacRae, C.A. (2023) The Role of MAPRE2 and Microtubules in Maintaining Normal Ventricular Conduction. Circulation research. 134(1):46-59

Lukowicz-Bedford, R.M., Farnsworth, D.R., Miller, A.C. (2022) Connexinplexity: The spatial and temporal expression of connexin genes during vertebrate organogenesis. G3 (Bethesda). 12(5):

Mongera, A., Pochitaloff, M., Gustafson, H.J., Stooke-Vaughan, G.A., Rowghanian, P., Kim, S., Campàs, O. (2022) Mechanics of the cellular microenvironment as probed by cells in vivo during zebrafish presomitic mesoderm differentiation. Nature Materials. 22(1):135-143

Farnsworth, D., Posner, M., Miller, A. (2021) Single cell transcriptomics of the developing zebrafish lens and identification of putative controllers of lens development. Experimental Eye Research. 206:108535

Hung, J.C., Wu, J.L., Hong, J.R. (2021) Proapoptotic Bad Involved in Brain Development, When Severely Defected, Induces Dramatic Malformation in Zebrafish. International Journal of Molecular Sciences. 22(9):

Hung, J.C., Wu, J.L., Li, H.C., Chiu, H.W., Hong, J.R. (2021) The Proapoptotic Gene Bad Regulates Brain Development via p53-Mediated Stress Signals in Zebrafish. Cells. 10(11):

Kim, D., Lee, Y.R., Choi, T.I., Kim, S.H., Kang, H.C., Kim, C.H., Lee, S. (2021) Comparative Proteome Research in a Zebrafish Model for Vanishing White Matter Disease. International Journal of Molecular Sciences. 22(5):

Takashima, S., Takemoto, S., Toyoshi, K., Ohba, A., Shimozawa, N. (2021) Zebrafish model of human Zellweger syndrome reveals organ-specific accumulation of distinct fatty acid species and widespread gene expression changes. Molecular genetics and metabolism. 133(3):307-323

De Oliveira, J., Chadili, E., Turies, C., Brion, F., Cousin, X., Hinfray, N. (2020) A comparison of behavioral and reproductive parameters between wild-type, transgenic and mutant zebrafish: Could they all be considered the same "zebrafish" for reglementary assays on endocrine disruption?. Comparative biochemistry and physiology. Toxicology & pharmacology : CBP. 239:108879

Shao, M., Lu, T., Zhang, C., Zhang, Y.Z., Kong, S.H., Shi, D.L. (2020) Rbm24 controls poly(A) tail length and translation efficiency of crystallin mRNAs in the lens via cytoplasmic polyadenylation. Proceedings of the National Academy of Sciences of the United States of America. 117:7245-7254

Symonds, A.C., Buckley, C.E., Williams, C.A., Clarke, J.D.W. (2020) Coordinated assembly and release of adhesions builds apical junctional belts during de novo polarisation of an epithelial tube. Development (Cambridge, England). 147(24):

Tsai, T.Y., Sikora, M., Xia, P., Colak-Champollion, T., Knaut, H., Heisenberg, C.P., Megason, S.G. (2020) An adhesion code ensures robust pattern formation during tissue morphogenesis. Science (New York, N.Y.). 370:113-116

Araya, C., Häkkinen, H.M., Carcamo, L., Cerda, M., Savy, T., Rookyard, C., Peyriéras, N., Clarke, J.D.W. (2019) Cdh2 coordinates Myosin-II dependent internalisation of the zebrafish neural plate. Scientific Reports. 9:1835

Campo-Paysaa, F., Clarke, J.D., Wingate, R.J. (2019) Generation of the squamous epithelial roof of the 4^th ventricle. eLIFE. 8:

Gore, A.V., Tomins, K.A., Iben, J., Ma, L., Castranova, D., Davis, A.E., Parkhurst, A., Jeffery, W.R., Weinstein, B.M. (2018) An epigenetic mechanism for cavefish eye degeneration. Nature ecology & evolution. 2(7):1155-1160

Krall, M., Htun, S., Anand, D., Hart, D., Lachke, S.A., Slavotinek, A.M. (2018) A zebrafish model of foxe3 deficiency demonstrates lens and eye defects with dysregulation of key genes involved in cataract formation in humans. Human genetics. 137(4):315-328

Parolini, M., Bini, L., Magni, S., Rizzo, A., Ghilardi, A., Landi, C., Armini, A., Del Giacco, L., Binelli, A. (2018) Exposure to cocaine and its main metabolites altered the protein profile of zebrafish embryos. Environmental pollution (Barking, Essex : 1987). 232:603-614

Unal Eroglu, A., Mulligan, T.S., Zhang, L., White, D.T., Sengupta, S., Nie, C., Lu, N.Y., Qian, J., Xu, L., Pei, W., Burgess, S.M., Saxena, M.T., Mumm, J.S. (2018) Multiplexed CRISPR/Cas9 Targeting of Genes Implicated in Retinal Regeneration and Degeneration. Frontiers in cell and developmental biology. 6:88

van Leeuwen, L.M., Evans, R.J., Jim, K.K., Verboom, T., Fang, X., Bojarczuk, A., Malicki, J., Johnston, S.A., van der Sar, A.M. (2018) A transgenic zebrafish model for the in vivo study of the blood and choroid plexus brain barriers using claudin 5.. Biology Open. 7(2)

Wagner, D.E., Weinreb, C., Collins, Z.M., Briggs, J.A., Megason, S.G., Klein, A.M. (2018) Single-cell mapping of gene expression landscapes and lineage in the zebrafish embryo. Science (New York, N.Y.). 360(6392):981-987

Wang, J., Yin, Y., Lau, S., Sankaran, J., Rothenberg, E., Wohland, T., Meier-Schellersheim, M., Knaut, H. (2018) Anosmin1 Shuttles Fgf to Facilitate Its Diffusion, Increase Its Local Concentration, and Induce Sensory Organs. Developmental Cell. 46(6):751-766.e12

Wu, X., Shen, W., Zhang, B., Meng, A. (2018) The genetic program of oocytes can be modified in vivo in the zebrafish ovary. Journal of molecular cell biology. 10(6):479-493

Binelli, A., Del Giacco, L., Santo, N., Bini, L., Magni, S., Parolini, M., Madaschi, L., Ghilardi, A., Maggioni, D., Ascagni, M., Armini, A., Prosperi, L., Landi, C., La Porta, C., Della Torre, C. (2017) Carbon nanopowder acts as a Trojan-horse for benzo(α)pyrene in Danio rerio embryos. Nanotoxicology. 11(3):371-381

Das, D., Chatti, V., Emonet, T., Holley, S.A. (2017) Patterned Disordered Cell Motion Ensures Vertebral Column Symmetry. Developmental Cell. 42:170-180.e5

Elodie, F., Anne-Sophie, V., Frédéric, S. (2017) Impacts of triclosan exposure on zebrafish early-life stage: Toxicity and acclimation mechanisms. Aquatic toxicology (Amsterdam, Netherlands). 189:97-107

Gurung, R., Ono, Y., Baxendale, S., Lee, S.L., Moore, S., Calvert, M., Ingham, P.W. (2017) The Zebrafish frozen Mutant Is a Model for Human Myopathy Associated with Mutation of the Unconventional Myosin MYO18B. Genetics. 205(2):725-735

Hinfray, N., Sohm, F., Caulier, M., Chadili, E., Piccini, B., Torchy, C., Porcher, J.M., Guiguen, Y., Brion, F. (2017) Dynamic and differential expression of the gonadal aromatase during the process of sexual differentiation in a novel transgenic cyp19a1a-eGFP zebrafish line. General and comparative endocrinology. 261:179-189

Russo, G., Theisen, U., Fahr, W., Helmsing, S., Hust, M., Köster, R.W., Dübel, S. (2017) Sequence defined antibodies improve the detection of Cadherin 2 (N-Cadherin) during Zebrafish development. New biotechnology. 45:98-112

Cherian, A.V., Fukuda, R., Augustine, S.M., Maischein, H.M., Stainier, D.Y. (2016) N-cadherin relocalization during cardiac trabeculation. Proceedings of the National Academy of Sciences of the United States of America. 113(27):7569-74

McMillen, P., Chatti, V., Jülich, D., Holley, S.A. (2016) A Sawtooth Pattern of Cadherin 2 Stability Mechanically Regulates Somite Morphogenesis. Current biology : CB. 26(4):542-9

Nguyen, A.T., Koh, V., Spitsbergen, J.M., Gong, Z. (2016) Development of a conditional liver tumor model by mifepristone-inducible Cre recombination to control oncogenic kras(V12) expression in transgenic zebrafish. Scientific Reports. 6:19559

Hinaux, H., Blin, M., Fumey, J., Legendre, L., Heuzé, A., Casane, D., Rétaux, S. (2015) Lens defects in Astyanax mexicanus cavefish: evolution of crystallins and a role for alphaA-crystallin. Developmental Neurobiology. 75(5):505-21

Jülich, D., Cobb, G., Melo, A.M., McMillen, P., Lawton, A.K., Mochrie, S.G., Rhoades, E., Holley, S.A. (2015) Cross-Scale Integrin Regulation Organizes ECM and Tissue Topology. Developmental Cell. 34(1):33-44

Panza, P., Maier, J., Schmees, C., Rothbauer, U., Söllner, C. (2015) Live imaging of endogenous protein dynamics in zebrafish using chromobodies. Development (Cambridge, England). 142:1879-84

Sun, L., Nguyen, A.T., Spitsbergen, J.M., Gong, Z. (2015) Myc-Induced Liver Tumors in Transgenic Zebrafish Can Regress in tp53 Null Mutation. PLoS One. 10:e0117249

Revenu, C., Streichan, S., Donà, E., Lecaudey, V., Hufnagel, L., Gilmour, D. (2014) Quantitative cell polarity imaging defines leader-to-follower transitions during collective migration and the key role of microtubule-dependent adherens junction formation. Development (Cambridge, England). 141:1282-91

Subedi, A., Macurak, M., Gee, S.T., Monge, E., Goll, M.G., Potter, C.J., Parsons, M.J., and Halpern, M.E. (2014) Adoption of the Q transcriptional regulatory system for zebrafish transgenesis. Methods (San Diego, Calif.). 66(3):433-40

Donà, E., Barry, J.D., Valentin, G., Quirin, C., Khmelinskii, A., Kunze, A., Durdu, S., Newton, L.R., Fernandez-Minan, A., Huber, W., Knop, M., and Gilmour, D. (2013) Directional tissue migration through a self-generated chemokine gradient. Nature. 503(7475):285-9

Konzer, A., Ruhs, A., Braun, H., Jungblut, B., Braun, T., and Krueger, M. (2013) Stable Isotope Labeling in Zebrafish Allows in Vivo Monitoring of Cardiac Morphogenesis. Molecular & cellular proteomics : MCP. 12(6):1502-12

Wages, P., Horwitz, J., Ding, L., Corbin, R.W., and Posner, M. (2013) Changes in zebrafish (Danio rerio) lens crystallin content during development. Molecular Vision. 19:408-417

Gorkin, D.U., Lee, D., Reed, X., Fletez-Brant, C., Bessling, S.L., Loftus, S.K., Beer, M.A., Pavan, W.J., and McCallion, A.S. (2012) Integration of ChIP-seq and machine learning reveals enhancers and a predictive regulatory sequence vocabulary in melanocytes. Genome research. 22(11):2290-2301

Nguyen, A.T., Emelyanov, A., Koh, C.H., Spitsbergen, J.M., Parinov, S., and Gong, Z. (2012) An inducible krasV12 transgenic zebrafish model for liver tumorigenesis and chemical drug screening. Disease models & mechanisms. 5(1):63-72

Gómez-Requeni, P., de Vareilles, M., Kousoulaki, K., Jordal, A.E., Conceição, L.E., and Rønnestad, I. (2011) Whole body proteome response to a dietary lysine imbalance in zebrafish Danio rerio. Comparative biochemistry and physiology. Part D, Genomics & proteomics. 6(2):178-86

Greiling, T.M., Houck, S.A., and Clark, J.I. (2009) The zebrafish lens proteome during development and aging. Molecular Vision. 15:2313-2325

Yokoi, H., Yan, Y.L., Miller, M.R., Bremiller, R.A., Catchen, J.M., Johnson, E.A., and Postlethwait, J.H. (2009) Expression profiling of zebrafish sox9 mutants reveals that Sox9 is required for retinal differentiation. Developmental Biology. 329(1):1-15

Emelyanov, A., and Parinov, S. (2008) Mifepristone-inducible LexPR system to drive and control gene expression in transgenic zebrafish. Developmental Biology. 320(1):113-121

Harding, R.L., Howley, S., Baker, L.J., Murphy, T.R., Archer, W.E., Wistow, G., Hyde, D.R., and Vihtelic, T.S. (2008) Lengsin expression and function during zebrafish lens formation. Experimental Eye Research. 86(5):807-818

Lucitt, M.B., Price, T.S., Pizarro, A., Wu, W., Yocum, A.K., Seiler, C., Pack, M.A., Blair, I.A., Fitzgerald, G.A., and Grosser, T. (2008) Analysis of the zebrafish proteome during embryonic development. Molecular & cellular proteomics : MCP. 7(5):981-994

Nakayama, Y., Miyake, A., Nakagawa, Y., Mido, T., Yoshikawa, M., Konishi, M., and Itoh, N. (2008) Fgf19 is required for zebrafish lens and retina development. Developmental Biology. 313(2):752-766

Posner, M., Hawke, M., Lacava, C., Prince, C.J., Bellanco, N.R., and Corbin, R.W. (2008) A proteome map of the zebrafish (Danio rerio) lens reveals similarities between zebrafish and mammalian crystallin expression. Molecular Vision. 14:806-814

Goishi, K., Shimizu, A., Najarro, G., Watanabe, S., Rogers, R., Zon, L.I., and Klagsbrun, M. (2006) {alpha}A-crystallin expression prevents {gamma}-crystallin insolubility and cataract formation in the zebrafish cloche mutant lens. Development (Cambridge, England). 133(13):2585-2593

Pogoda, H.M., von der Hardt, S., Herzog, W., Kramer, C., Schwarz, H., and Hammerschmidt, M. (2006) The proneural gene ascl1a is required for endocrine differentiation and cell survival in the zebrafish adenohypophysis. Development (Cambridge, England). 133(6):1079-1089

Shimada, N., and Moorman, S.J. (2006) Changes in gravitational force cause changes in gene expression in the lens of developing zebrafish. Developmental Dynamics : an official publication of the American Association of Anatomists. 235(10):2686-2694

Xu, J., Srinivas, B.P., Tay, S.Y., Mak, A., Yu, X., Lee, S.G., Yang, H., Govindarajan, K.R., Leong, B., Bourque, G., Mathavan, S., and Roy, S. (2006) Genome-wide Expression Profiling in the Zebrafish Embryo Identifies Target Genes Regulated by Hedgehog Signaling During Vertebrate Development. Genetics. 174(2):735-752

Nowak, M., Köster, C., and Hammerschmidt, M. (2005) Perp is required for tissue-specific cell survival during zebrafish development. Cell death and differentiation. 12(1):52-64

Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J., and Marra,M.A. (2002) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proceedings of the National Academy of Sciences of the United States of America. 99(26):16899-903

Chen, J.-Y., Chang, B.-E., Chen, Y.-H., Lin, C.J.F., Wu, J.-L., and Kuo, C.-M. (2001) Molecular Cloning, Developmental Expression, and Hormonal Regulation of Zebrafish (Danio rerio) β Crystallin B1, a Member of the Superfamily of β Crystallin Proteins. Biochemical and Biophysical Research Communications. 285(1):105-110

Additional Citations (20):

ZFIN Staff (2024) Association of Ensembl transcripts with ZFIN genes. Semi-automated Curation.

ZFIN Staff (2023) Automated Curation of UniProt Database Links. Automated Data Submission.

ZFIN Staff (2020) Addition of links from ZFIN to Expression Atlas. Semi-automated Curation.

Zebrafish Nomenclature Committee (2018) Nomenclature Data Curation (2018). Nomenclature Committee Submission.

Zebrafish Nomenclature Committee (2017) Nomenclature Data Curation (2017). Nomenclature Committee Submission.

ZFIN Staff (2017) Curation of PANTHER Gene IDs. Automated Data Submission.

ZFIN Staff (2017) Curation of Alliance of Genome Resources Database Links. Automated Data Submission.

Varshney, G.K., Zhang, S., Burgess, S.M., ZFIN Staff (2015) Automated Data Load From CRISPRz. ZFIN Direct Data Submission.

ZFIN Staff (2013) Semi-automated association of ENSDARG identifiers with ZFIN genes for the ZMP project. Semi-automated Curation.

Gaudet, P., Livstone, M., Thomas, P., The Reference Genome Project (2010) Annotation inferences using phylogenetic trees. Automated Data Submission.

ZFIN Staff (2007) Microarray Expression to Gene Association in ZFIN. Semi-automated Curation.

ZFIN Staff (2006) Curation of Ensembl Database Links. Automated Data Submission.

Thisse, C., and Thisse, B. (2005) High Throughput Expression Analysis of ZF-Models Consortium Clones. ZFIN Direct Data Submission.

Thisse, B., Thisse, C. (2004) Fast Release Clones: A High Throughput Expression Analysis. ZFIN Direct Data Submission.

ZFIN Staff (2003) Curation of VEGA Database Links. Automated Data Submission.

ZFIN Staff (2003) Curation of orthology data. Manually curated data.

ZFIN Staff (2003) Computational Sequence to Gene Association in ZFIN. Semi-automated Curation.

ZFIN Staff (2002) Gene Ontology Annotation Through Association of UniProt Keywords with GO Terms. Automated Data Submission.

ZFIN Staff (2002) Curation of NCBI Gene Data Via Shared RNA Sequence IDs. Automated Data Submission.

ZFIN Staff (2002) Scientific Curation. Manually curated data.