Mapping Details

GENETIC MAPPING PANELS

Chr	Location	Mapped As	Panel	Mapped By	Scoring
9	64.1 cM	z8363	Boston MGH Cross (MGH)	Fishman, Mark C.	Data
9	470.73 cR	Z8363	Loeb/NIH/5000/4000 (LN54)	Dawid, Igor B.	Data
9	4576.0 cR	z8363	Goodfellow T51 (T51)	Geisler, Robert	Data
9	90.0 cM	z8363	Heat Shock (HS)	Woods, Ian G.	Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location. Note: Physical map location should be used whenever possible.

MAPPING FROM PUBLICATIONS

Marker	Type	Chr	Distance	Publication / Person	Comments
spryd7a	GENE	9	0.95 cR	Auer et al., 2007	Auer RL et al (Br. J Hematol. 137, 443-453) mapped the zebrafish orthologs and  ... Auer RL et al (Br. J Hematol. 137, 443-453) mapped the zebrafish orthologs and syntenic region on human 13q14 to zebrafish LG 9. The genes were mapped using the LN54 RH panel in the order: trim13 - si:busm1-79f24.1 - rnaseh2b - mirn15a - mirn16c.These genes were placed between z8363 and z10789.
z10789	SSLP	9		Auer et al., 2007	Auer RL et al (Br. J Hematol. 137, 443-453) mapped the zebrafish orthologs and  ... Auer RL et al (Br. J Hematol. 137, 443-453) mapped the zebrafish orthologs and syntenic region on human 13q14 to zebrafish LG 9. The genes were mapped using the LN54 RH panel in the order: trim13 - si:busm1-79f24.1 - rnaseh2b - mirn15a - mirn16c.These genes were placed between z8363 and z10789.
z7807	SSLP	9		Auer et al., 2007	Auer RL et al (Br. J Hematol. 137, 443-453) mapped the zebrafish orthologs and  ... Auer RL et al (Br. J Hematol. 137, 443-453) mapped the zebrafish orthologs and syntenic region on human 13q14 to zebrafish LG 9. The genes were mapped using the LN54 RH panel in the order: trim13 - si:busm1-79f24.1 - rnaseh2b - mirn15a - mirn16c.These genes were placed between z8363 and z10789.
mir16c	MIRNAG	9		Auer et al., 2007	Auer RL et al (Br. J Hematol. 137, 443-453) mapped the zebrafish orthologs and  ... Auer RL et al (Br. J Hematol. 137, 443-453) mapped the zebrafish orthologs and syntenic region on human 13q14 to zebrafish LG 9. The genes were mapped using the LN54 RH panel in the order: trim13 - si:busm1-79f24.1 - rnaseh2b - mirn15a - mirn16c.These genes were placed between z8363 and z10789.
arhgap20	GENE	9		Auer et al., 2007	Auer RL et al (Br. J Hematol. 137, 443-453) mapped the zebrafish orthologs and  ... Auer RL et al (Br. J Hematol. 137, 443-453) mapped the zebrafish orthologs and syntenic region on human 13q14 to zebrafish LG 9. The genes were mapped using the LN54 RH panel in the order: trim13 - si:busm1-79f24.1 - rnaseh2b - mirn15a - mirn16c.These genes were placed between z8363 and z10789.
trim13	GENE	9		Auer et al., 2007	Auer RL et al (Br. J Hematol. 137, 443-453) mapped the zebrafish orthologs and  ... Auer RL et al (Br. J Hematol. 137, 443-453) mapped the zebrafish orthologs and syntenic region on human 13q14 to zebrafish LG 9. The genes were mapped using the LN54 RH panel in the order: trim13 - si:busm1-79f24.1 - rnaseh2b - mirn15a - mirn16c.These genes were placed between z8363 and z10789.
fdx1	GENE	9		Auer et al., 2007	Auer RL et al (Br. J Hematol. 137, 443-453) mapped the zebrafish orthologs and  ... Auer RL et al (Br. J Hematol. 137, 443-453) mapped the zebrafish orthologs and syntenic region on human 13q14 to zebrafish LG 9. The genes were mapped using the LN54 RH panel in the order: trim13 - si:busm1-79f24.1 - rnaseh2b - mirn15a - mirn16c.These genes were placed between z8363 and z10789.
mir15a-2	MIRNAG	9	2.56 cR	Auer et al., 2007	Auer RL et al (Br. J Hematol. 137, 443-453) mapped the zebrafish orthologs and  ... Auer RL et al (Br. J Hematol. 137, 443-453) mapped the zebrafish orthologs and syntenic region on human 13q14 to zebrafish LG 9. The genes were mapped using the LN54 RH panel in the order: trim13 - si:busm1-79f24.1 - rnaseh2b - mirn15a - mirn16c.These genes were placed between z8363 and z10789.
rnaseh2b	GENE	9		Auer et al., 2007	Auer RL et al (Br. J Hematol. 137, 443-453) mapped the zebrafish orthologs and  ... Auer RL et al (Br. J Hematol. 137, 443-453) mapped the zebrafish orthologs and syntenic region on human 13q14 to zebrafish LG 9. The genes were mapped using the LN54 RH panel in the order: trim13 - si:busm1-79f24.1 - rnaseh2b - mirn15a - mirn16c.These genes were placed between z8363 and z10789.
mstnb	GENE	9	0.5 cR	Xu et al., 2003	Xu et al. (2003, J. Exp. Biol. 206(22):4067-4079) mapped gdf8 to LG9 0.5 cR  ... Xu et al. (2003, J. Exp. Biol. 206(22):4067-4079) mapped gdf8 to LG9 0.5 cR from z8363.
ttn.2	GENE	9		Xu et al., 2002	Xu et al. (2002, Nature Genetics 30:205-209) report mapping the ttn gene to Linkage Group 9, within a 1.2 cM region between markers Z8363 and Z26463. They conducted a chromosome walk between the two markers to localize the ttn gene.
z26463	SSLP	9	1.2 cM	Xu et al., 2002	Xu et al. (2002, Nature Genetics 30:205-209) report mapping the ttn gene to Linkage Group 9, within a 1.2 cM region between markers Z8363 and Z26463. They conducted a chromosome walk between the two markers to localize the ttn gene.

OTHER MAPPING INFORMATION

Primer Sets:

Strain	Bandsize	Restriction Enzyme	Annealing Temperature [C]
AB	0,159		60.0
Forward Primer	CCAGTAATGCCACACTGGG
Reverse Primer	TGTCTCATTCAGCGAGCG
IND	0,183,149		60.0
Forward Primer	CCAGTAATGCCACACTGGG
Reverse Primer	TGTCTCATTCAGCGAGCG
EKW	211,191		60.0
Forward Primer	CCAGTAATGCCACACTGGG
Reverse Primer	TGTCTCATTCAGCGAGCG
TU	0,185,183,149		60.0
Forward Primer	CCAGTAATGCCACACTGGG
Reverse Primer	TGTCTCATTCAGCGAGCG