ZFIN is now using GRCz12tu for Genomic Data
Gene
trim13
- ID
- ZDB-GENE-050522-516
- Name
- tripartite motif containing 13
- Symbol
- trim13 Nomenclature History
- Previous Names
-
- zgc:110578
- Type
- protein_coding_gene
- Location
- Chr: 9 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable ubiquitin protein ligase activity. Predicted to be located in endoplasmic reticulum membrane. Is expressed in brain; male organism; muscle; ovary; and testis. Orthologous to human TRIM13 (tripartite motif containing 13).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 3 figures from 3 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Conserved_site | IPR017907 | Zinc finger, RING-type, conserved site |
| Domain | IPR000315 | B-box-type zinc finger |
| Domain | IPR001841 | Zinc finger, RING-type |
| Domain | IPR027370 | Zinc finger, RING-type, eukaryotic |
| Family | IPR047153 | TRIM45/56/19-like |
| Homologous_superfamily | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
Domain Details Per Protein
| Protein | Additional Resources | Length | B-box-type zinc finger | TRIM45/56/19-like | Zinc finger, RING/FYVE/PHD-type | Zinc finger, RING-type | Zinc finger, RING-type, conserved site | Zinc finger, RING-type, eukaryotic |
|---|---|---|---|---|---|---|---|---|
| UniProtKB:H9KUW1 | InterPro | 414 | ||||||
| UniProtKB:Q503I2 | InterPro | 404 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| aberrant processed transcript |
trim13-202
(1)
|
Ensembl | 2,077 nt | ||
| mRNA |
trim13-201
(1)
|
Ensembl | 2,775 nt | ||
| mRNA |
trim13-203
(1)
|
Ensembl | 1,493 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers