ZFIN ID: ZDB-GENE-000823-6

Mapping Details

Gene Name: homeobox B5b
Symbol: hoxb5b
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN JBrowse 12 27,129,659 - 27,131,735 GRCz11
Ensembl 12 27,129,659 - 27,131,735 GRCz11
Vega 12 27,038,299 - 27,040,375 GRCv10
NCBI Map Viewer 12 27,129,659 - 27,131,735 GRCz11
UCSC 12 - GRCz11
Mapped Clones containing hoxb5b
BUSM1-227H09 Chr: 12 Details
DKEY-11C5 Chr: 12 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Citations
hza5 12 27,130,210 - 27,130,213 GRCz11 Zhang et al., 2020
12 27,130,210 - 27,130,213 GRCz11 Zebrafish Nomenclature Committee
sa42041 12 27,130,942 GRCz11 Busch-Nentwich et al., 2013
12 27,039,582 GRCz10 Busch-Nentwich et al., 2013
12 28,701,973 Zv9 Busch-Nentwich et al., 2013

GENETIC MAPPING PANELS
Chr Location Mapped As Panel Mapped By Scoring
12 225.17 cR IBD2566 Loeb/NIH/5000/4000 (LN54) Dawid, Igor B. Data
12 3465.0 cR hoxb5b Goodfellow T51 (T51) Geisler, Robert Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.
MAPPING FROM PUBLICATIONS
Marker Type Chr Distance Publication / Person Comments
hoxb6b GENE 12 Amores et al., 1998 Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxb8b, hoxb6b, hoxb5b, and hoxb1b are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG12.
hoxb1b GENE 12 Amores et al., 1998 Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxb8b, hoxb6b, hoxb5b, and hoxb1b are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG12.
hoxb8b GENE 12 Amores et al., 1998 Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxb8b, hoxb6b, hoxb5b, and hoxb1b are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG12.
mir10a MIRNAG 12 Woltering et al., 2006 Woltering and Durston (2006, Nat. Genet. 38(6):601-602) have mapped mirn10a between hoxb1b and hoxb5b.
hoxb1b GENE 12 Woltering et al., 2006 Woltering and Durston (2006, Nat. Genet. 38(6):601-602) have mapped mirn10a between hoxb1b and hoxb5b.

OTHER MAPPING INFORMATION
Chr 12 Amores et al., 1998 Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxb8b,  ...
Chr 12 Woltering et al., 2006 Woltering and Durston (2006, Nat. Genet. 38(6):601-602) have mapped mirn10a between  ...
Genomic Feature fh478 is an allele of hoxb5b