Mapping Details

Genome Browser Chr Position Assembly ZFIN 19 22,006,804 - 22,011,551 GRCz12tu NCBI Map Viewer 19 22,006,804 - 22,011,551 GRCz12tu Ensembl 19 19,747,430 - 19,752,145 GRCz11 NCBI Map Viewer 19 19,750,101 - 19,752,139 GRCz11 UCSC 19 - GRCz11 Vega 19 20,174,479 - 20,179,194 GRCv10 Vega 19 20,177,272 - 20,189,280 GRCv10

Mapped Clones containing hoxa9a
DKEY-25E11	Chr: 19 Details

GENETIC MAPPING PANELS

Chr	Location	Mapped As	Panel	Mapped By	Scoring
19	204.09 cR	Hoxx9	Loeb/NIH/5000/4000 (LN54)	Dawid, Igor B.	Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location. Note: Physical map location should be used whenever possible.

MAPPING FROM PUBLICATIONS

Marker	Type	Chr	Distance	Publication / Person	Comments
hoxa3a	GENE	19		Amores et al., 1998	Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report evx1, hoxa13a, hoxa11a, hoxa10ap, hoxa9a, hoxa5a, hoxa4a, hoxa3a, and hoxa1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG19.
hoxa4a	GENE	19		Amores et al., 1998	Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report evx1, hoxa13a, hoxa11a, hoxa10ap, hoxa9a, hoxa5a, hoxa4a, hoxa3a, and hoxa1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG19.
hoxa1a	GENE	19		Amores et al., 1998	Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report evx1, hoxa13a, hoxa11a, hoxa10ap, hoxa9a, hoxa5a, hoxa4a, hoxa3a, and hoxa1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG19.
hoxa11a	GENE	19		Amores et al., 1998	Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report evx1, hoxa13a, hoxa11a, hoxa10ap, hoxa9a, hoxa5a, hoxa4a, hoxa3a, and hoxa1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG19.
hoxa5a	GENE	19		Amores et al., 1998	Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report evx1, hoxa13a, hoxa11a, hoxa10ap, hoxa9a, hoxa5a, hoxa4a, hoxa3a, and hoxa1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG19.
evx1	GENE	19		Amores et al., 1998	Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report evx1, hoxa13a, hoxa11a, hoxa10ap, hoxa9a, hoxa5a, hoxa4a, hoxa3a, and hoxa1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG19.
hoxa13a	GENE	19		Amores et al., 1998	Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report evx1, hoxa13a, hoxa11a, hoxa10ap, hoxa9a, hoxa5a, hoxa4a, hoxa3a, and hoxa1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG19.
hoxa10ap	GENEP	19		Amores et al., 1998	Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report evx1, hoxa13a, hoxa11a, hoxa10ap, hoxa9a, hoxa5a, hoxa4a, hoxa3a, and hoxa1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG19.
hoxa11a	GENE	19		He et al., 2011	He X et al (Zebrafish 8(1), 1-8) placed the mirn196a-2 gene between the  ... He X et al (Zebrafish 8(1), 1-8) placed the mirn196a-2 gene between the hoxa11a and hox9a genes on LG19.
mir196a-2	MIRNAG	19		He et al., 2011	He X et al (Zebrafish 8(1), 1-8) placed the mirn196a-2 gene between the  ... He X et al (Zebrafish 8(1), 1-8) placed the mirn196a-2 gene between the hoxa11a and hox9a genes on LG19.
mir196a-2	MIRNAG	19		Yekta et al., 2004	Yekta et al. (2005, Science 304(5670):594-596) mapped mirn196b.1a near hoxa9a.

OTHER MAPPING INFORMATION

Chr 19 Amores et al., 1998 Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report evx1,  ... Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report evx1, hoxa13a, hoxa11a, hoxa10ap, hoxa9a, hoxa5a, hoxa4a, hoxa3a, and hoxa1a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG19.   Chr 19 Yekta et al., 2004 Yekta et al. (2005, Science 304(5670):594-596) mapped mirn196b.1a near hoxa9a. Yekta et al. (2005, Science 304(5670):594-596) mapped mirn196b.1a near hoxa9a.   Chr 19 He et al., 2011 He X et al (Zebrafish 8(1), 1-8) placed the mirn196a-2 gene between the hoxa11a and hox9a genes on  ... He X et al (Zebrafish 8(1), 1-8) placed the mirn196a-2 gene between the hoxa11a and hox9a genes on LG19.

Markers Encoded by hoxa9a
fd07f09 Chr: 19 Details