Gene

hoxa3a

ID

ZDB-GENE-000823-3

Name

homeobox A3a

Symbol

hoxa3a Nomenclature History

Previous Names

hoxa3
cb332 (1)

Type

protein_coding_gene

Location

Chr: 19 Mapping Details/Browsers

Description

Exhibits DNA binding activity. Predicted to be involved in anterior/posterior pattern specification; embryonic skeletal system morphogenesis; and positive regulation of transcription by RNA polymerase II. Predicted to localize to nucleus. Is expressed in several structures, including ectoderm; hindbrain; hindbrain neural keel; hindbrain neural plate; and pharyngeal arch. Orthologous to human HOXA3 (homeobox A3).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

25 figures from 15 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

cb332 (13 images)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With hoxa3a Human Ortholog

No data available

Associated With hoxa3a Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Conserved_site	IPR001827	Homeobox protein, antennapedia type, conserved site
Conserved_site	IPR017970	Homeobox, conserved site
Domain	IPR001356	Homeodomain
Domain	IPR020479	Homeodomain, metazoa
Domain	IPR025281	Domain of unknown function DUF4074
Homologous_superfamily	IPR009057	Homedomain-like superfamily

Domain Details Per Protein

Protein	Length	Domain of unknown function DUF4074	Homedomain-like superfamily	Homeobox, conserved site	Homeobox protein, antennapedia type, conserved site	Homeodomain	Homeodomain, metazoa
UniProtKB:A0A0N4SUA4 InterPro
UniProtKB:A0A0N4SU55 InterPro
UniProtKB:A0A0N4STW5 InterPro
UniProtKB:Q8AWZ2 InterPro	410

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	hoxa3a-202 (1) Ensembl	Ensembl	492 nt	Select Tool ZFIN BLAST
mRNA	hoxa3a-203 (1) Ensembl	Ensembl	2,200 nt	Select Tool ZFIN BLAST
mRNA	hoxa3a-204 (1) Ensembl	Ensembl	358 nt	Select Tool ZFIN BLAST
mRNA	hoxa3a-205 (1) Ensembl	Ensembl	816 nt	Select Tool ZFIN BLAST
mRNA	hoxa3a-207 (1) Ensembl	Ensembl	405 nt	Select Tool ZFIN BLAST
mRNA	hoxa3a-208 (1) Ensembl	Ensembl	1,345 nt	Select Tool ZFIN BLAST
mRNA	hoxa3a-209 (1) Ensembl	Ensembl	2,202 nt	Select Tool ZFIN BLAST
mRNA	hoxa4a-210 (1) Ensembl	Ensembl	1,725 nt	Select Tool ZFIN BLAST
mRNA	hoxa4a-211 (1) Ensembl	Ensembl	1,519 nt	Select Tool ZFIN BLAST
ncRNA	hoxa3a-007 (1) Ensembl	Ensembl	438 nt	Select Tool ZFIN BLAST
ncRNA	hoxa3a-008 (1) Ensembl	Ensembl	567 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

Addgene:pGEM-T ZfHoxa3a

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations