ZFIN is now using GRCz12tu for Genomic Data
Gene
hoxa9a
- ID
- ZDB-GENE-000823-1
- Name
- homeobox A9a
- Symbol
- hoxa9a Nomenclature History
- Previous Names
- Type
- protein_coding_gene
- Location
- Chr: 19 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in embryonic skeletal system morphogenesis; regionalization; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within DNA-templated transcription and regulation of DNA-templated transcription. Predicted to be active in nucleus. Is expressed in several structures, including margin; mesoderm; musculature system; nervous system; and tail bud. Orthologous to human HOXA9 (homeobox A9).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 31 figures from 20 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- IMAGE:6898223 (10 images)
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Conserved_site | IPR017970 | Homeobox, conserved site |
| Domain | IPR001356 | Homeodomain |
| Domain | IPR006711 | Hox9, N-terminal activation domain |
| Domain | IPR020479 | Homeodomain, metazoa |
| Family | IPR017112 | Homeobox protein HXA9/HXB9/HXC9 |
| Family | IPR050803 | Abd-B homeobox transcription factor |
| Homologous_superfamily | IPR009057 | Homedomain-like superfamily |
Domain Details Per Protein
| Protein | Additional Resources | Length | Abd-B homeobox transcription factor | Homedomain-like superfamily | Homeobox, conserved site | Homeobox protein HXA9/HXB9/HXC9 | Homeodomain | Homeodomain, metazoa | Hox9, N-terminal activation domain |
|---|---|---|---|---|---|---|---|---|---|
| UniProtKB:Q9PWL6 | InterPro | 250 | |||||||
| UniProtKB:B2GSB0 | InterPro | 250 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
cr382300.2-201
(1)
|
Ensembl | 498 nt | ||
| mRNA |
hoxa9a-201
(1)
|
Ensembl | 926 nt | ||
| mRNA |
hoxa9a-202
(1)
|
Ensembl | 1,752 nt |
Interactions and Pathways
No data available
Plasmids
- Genome Browsers