ZFIN ID: ZDB-GENE-990415-5
Gene Name: homeobox A13a
Gene Symbol: hoxa13a    Nomenclature History

{{control.fieldName}} Edit

ID: {{control.nomenID}}
{{control.fieldName}}:
Reason:
Comments:

Attributions

{{pub.zdbID}}
Previous Name:

Add new Alias

Alias
Attribution

Attributions for Alias: {{control.newAlias}}

{{pub.zdbID}}

Delete Alias:

(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 19 Mapping Details/Browsers
Description: Exhibits DNA-binding transcription factor activity, RNA polymerase II-specific. Involved in fin development and negative regulation of transcription by RNA polymerase II. Predicted to localize to nucleus. Is expressed in several structures, including central nervous system; gut; notochord; pectoral fin; and pectoral fin bud. Human ortholog(s) of this gene implicated in Guttmacher syndrome and hand-foot-genital syndrome. Orthologous to human HOXA13 (homeobox A13).
Genome Resources: Alliance (1),  Gene:570239 (1),  Ensembl(GRCz11):ENSDARG00000100312 (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
ch307 Complex Unknown Unknown CRISPR
Sequence Targeting Reagents
Targeting Reagent Created Alleles Publications
CRISPR1-hoxa13a 1
CRISPR2-hoxa13a 1
MO1-hoxa13a N/A 1
DISEASE ASSOCIATED WITH hoxa13a HUMAN ORTHOLOG
Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
Guttmacher syndrome Alliance ?Guttmacher syndrome 176305
hand-foot-genital syndrome Alliance Hand-foot-uterus syndrome 140000
DISEASE ASSOCIATED WITH hoxa13a VIA EXPERIMENTAL MODELS No data available
PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
TRANSCRIPTS
Type Name Length (nt) Analysis
mRNA hoxa13a-201 (1)    Ensembl 1669
Browsers: UCSCNCBIEnsemblZFIN
INTERACTIONS AND PATHWAYS
ANTIBODIES No data available
PLASMIDS
Addgene:Hox A13a
CONSTRUCTS WITH SEQUENCES FROM hoxa13a No data available
MARKER RELATIONSHIPS
hoxa13a Contained in: [BAC] DKEY-25E11 (1) (order this)
hoxa13a Encodes: [cDNA] MGC:162136 (1)
SEQUENCE INFORMATION
Type Accession # Length (nt/aa) Analysis
RNA RefSeq:NM_001085494 (1) 1703 nt
Genomic GenBank:CR382300 (1) 202006 nt Blast at MegaBLAST
Polypeptide UniProtKB:A3KNK0 (1) 310 aa
Sequence Information (all 16)
ORTHOLOGY for hoxa13a ( Chr: 19 )
CITATIONS (46)